TCONS_00003739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003739
Unique NameTCONS_00003739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003739 ID=TCONS_00003739|Name=TCONS_00003739|organism=Clytia hemisphaerica|type=transcript|length=1353bp
ATTTTGGATGACTCAacttttttcttcctggaaaactTTCCTAGTGCCAT
TTTACAACAGAAAAGACAGATTCTGGaGCGTTATCTACAAAACTATTTGG
ATGAAGGAGTAAAAATAATCTGGAGTAAGCgagacgaagaagaagaaggg
gTGTTTTGCTTGTTGCCATGGAGCTTTCAGAAAACAAGGACAAAAAAGAG
ATTGTGAAATATGACCATAACACCGGAAACATAGACAATAGTGTATCGGA
AAGATACGAATCCGGGTATACGGGTACTGTTAAATACGGAATTGACCGTA
AATTTATTGCCTTGATTACCTTTGCTTTTTTATTGCTAATCGTTGGTATT
GTCTTGATTATTCTTGCGAACGTTAACTCGTGTGAGACATCGAGTACTAC
TGAACTCGTTGACCCAGATCAGGGAAAGACTGTTTTAAGTGACGACCTTT
GTGACCCATCTGAAGAAGCTAAGCGAGTcaaattgaatgaatttttgata
aaagtacAAGATGTGTACCACGAAGTTTTCCCGGAAGAGATAGCATGGTC
ACCGGAAGTAACAGATCAAATTATAAGGAATAAATTTAAAGCACATGATC
CATCTCCAGAGAATTTGAAGAAGATTTGGGAAAATGCTGACGCGCTGTTG
AACGAATCAATCAATTTGaatccaGACAAATCGAAATTGAAACCGCGCGA
ACACAAAGCTTACCTGCAAGTACAGCATTTCCTTCAAAACACTTTTGGCT
TTGGTTACCTGAATTACAAAGCTGGATTATGGCTTCTAGGACCTAGCAGT
TTTTGTTCTGAACCGATATGCTATTTGGCGTATGCTGTTTATAATTCCAT
TGGTTCAATGGCTCCTTCGACTGAAGATGATGTTTACTTCGTAGAAAACC
AtttaaaagatgtgaaaaaaTCTATTTACACCTACAttgatgttttgaaa
atgggtaTCAAGAAAGGTATGGTACGAACGCACGTGGAATGTGTCGCTGG
AATCGATGCCATGAAATCTAAGCATCCTAATATCACTGAAAACGGCCCTA
AAGGCATCGTAGGCGAATGGTACGTGCGCCGAATGTATGAGCCGTTATTT
TACAACAACGTTACGATCAAACTGGATAAGATTTTTGTCAAGAAACANAT
TTCTcgaaacagtttggaaaacgttaaaaatccatgtggaaaatacattt
ttgtgaaattgaaactctttcgattggaaaactagacttgttgggttgga
aatttgtgtttctccaaacagtttggaaaacgttaaaaatccatgtggaa
attacatttttgtgaaattgaaactctttcgattggaaaactagactttt
tgg
Run BLAST on NCBI

transcript from alignment at sc0000031:401103..407325+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003739 ID=TCONS_00003739|Name=TCONS_00003739|organism=Clytia hemisphaerica|type=transcript|length=6223bp|location=Sequence derived from alignment at sc0000031:401103..407325+ (Clytia hemisphaerica)
ATTTTGGATGACTCAacttttttcttcctggaaaactTTCCTAGTGCCAT
TTTACAACAGAAAAGACAGATTCTGGGTAGGTAAAGAAGTAACTTTGTGA
AACAGCTTAAGTGATCAGTGCCCGGCTGTgatgtattttataagcatttg
tACGCAGCAGATCTTTTTTACGGTACGGCTGGGTAGGGCAGCGAAAAGAT
TCTGGAAGTGGACCAGAAATTCTTAGCCGGAGAAactaattgaaaatatt
ttcggaaTTGAAACTATACATCAATGTTTCCAAAATCTGCAATTTATGCC
TTAATGAAAAActtgaagaaatattttataaataataAACGAACAGAACA
AAAGGTGTGAgattatacaccttttcgaccgtagcagccaattgccgcgc
gggcattttttgtccattttaccaccctaaaacttatctgatattccgat
ggcgtattggcggccgcccacgctaaagctctgaaaatatgcccgacctt
cagagcaaagtgtgtcgtagcatatttccacatctggtaccagataaccC
TAAAACcttcccagtcttttttttcctaaagacaatagaaaaaggtgtaa
agaaggattggatcgagtttagggtggtaaattaaataataaagtgacac
gcgcctgaccgtgcgactacggtcgaaaaggtgtattgtcaaatgaaaaa
tatacaGGGTGGGCAAAAAAAATATGGTCGGACAAAAGTTATGCTACTTT
CAGAGCAATTAAGTAAAAAAAGTGCTTTGCGAGTAGAATAATTTTTGTCT
GACCATATTTTTTGCATACCCTTTACCAGCTAATTATTATTAGTTGATtg
attctcatttttatattatCAATTTTTACGACTTATTTCAAAGCGGATTG
TACCATTTTTTCACGAAAAATCTATGTGTATCAATATACTTATAACGCTG
AAGATTGTAAAGGCTTGAAGCTTTGAATACTGTTTATTtaacagtctagt
ttttgatattttatgttctggtttaatATGTAATGAATAATGAAGACcaa
tatttttctatttcagaGCGTTATCTACAAAACTATTTGGATGAAGGAGT
AAAAATAATCTGGAGTAAGCgagacgaagaagaagaaggggTGTTTTGCT
TGTTGCCATGGAGCTTTCAGAAAACAAGGACAAAAAAGAGATTGTGAAAT
ATGACCATAACACCGGAAACATAGACAATAGTGTATCGGAAAGATACGAA
TCCGGGTATACGGGTACTGTTAAATACGGAATTGACCGTAAATTTATTGC
CTTGATTACCTTTGCTTTTTTATTGCTAATCGTTGGTATTGTCTTGATTA
TTCTTGCGAACGTTAACTCGTGTGAGACATCGAGTACTACTGAACTCGTT
GACCCAGATCAGGGAAAGACTGTTTTAAGTGACGACCTTTGTGACCCATC
TGAAGAAGCTAAGCGAGTcaaattgaatgaatttttgataaaagtacAAG
ATGTGTACCACGAAGTTTTCCCGGAAGAGATAGCATGGTCACCGGAAGTA
ACAGATCAAATTATAAGGAATAAATTTAAAGCACATGATCCATCTCCAGA
GAATTTGAAGAAGATTTGGGAAAATGCTGACGCGCTGTTGAACGAATCAA
TCAATTTGGTATGTAGGGGCGTTTCGTTTCTACTAATAATAACGCTGTAA
CCATTTTGAGTCCCGTCTAACCGCTAAATCAACTAAGTTTACCGTAcgag
ttttaagtttttgaaaCCCTACTTATCTCTTTTGTCATACCTTTATTTTA
ATCTgaattttcgtcaaatttttcttcaaaacattcaaacgaTATTTGCT
TATCGATAGGTAGATTAAAATGACGTATTAATTTTGTCTAGCCTTTGTTC
AGGCTAAAGAACCTTTTTGCTGGCTAATCGCAAAGTAAGGTAGACTTAGC
CGGCATAGTATACATGCTtcgctttttgaaaaaaaatttctagaaGCAAA
TTTCTGCTTTACAAGCAAAGTTGATTTCGTAGCAGGGTAGAACTGCCTTG
CTTTCGGGTCAACCTGTAGGTATCTATCGATATGTATTTATTtatgttcc
cgtttcatatcaggcacatatatttcatatcaggacagtgtttgcttatt
gttattttatgctgatataagcaaaacaatgtttttcttttcctctttct
gaccaaccttgctccacatccgtgtaaatccaatgtgaaaaagctggtaa
attaaaattgatgagttagcaaacgatatcactcttatttaaaacaaaac
ctttaaccttACTAGTGGAGAACTTTAAAACAACACCTGTGTACCAGCTC
TAAACCAACTTTAAACAGTTAGAGTCTTCAAGGGAACCAACAATTAGTTA
CAGTCTCTTTTATGAGTTTTATGTTAAGGGGTCGAGGGGTCtagtttgaa
ttacagaaagattccaATGATAGAATGTCGAATTGGAGAGAATTGCCTAT
ACTTATTATacttatcgaccgccggaggcggtttctttcatagtggtacg
ctaatctcgttttgccttggctcgttactttgtctgccatttactttcgg
tttttttaactagatNcactgtgacctagttatacttacttttcattttt
agaatccaGACAAATCGAAATTGAAACCGCGCGAACACAAAGCTTACCTG
CAAGTACAGCATTTCCTTCAAAACACTTTTGGCTTTGGTTACCTGAATTA
CAAAGCTGGATTATGGCTTCTAGGACCTAGCAGTTTTTGTTCTGAACCGA
TATGCTATTTGGCGTATGCTGTTTATAATTCCATTGGTTCAATGGCTCCT
TCGACTGAAGATGATGTTTACTTCGTAGAAAACCAtttaaaagatgtgaa
aaaaTCTATTTACACCTACAttgatgttttgaaaatgggtaTCAAGAAAG
GtaagatattttctttttccataaagaacatttttagaggTAGACTTTTC
AATTACTGGGTTTATAAAAATGATTAGCTATTGGAATCTTcggttgttgt
tttttttgagaGCAAAACTGTTCTTTTCCTATAATTTCCGTATTTTTAGG
TATTTTACATGCTATAACCTCATTGTCGTGTTATAACCTCGTTGTCATAT
CAAAGCCTTGTTTTCATGCTAGAACCTCGTTTTCATGTTATATAGGTATG
GTACGAACGCACGTGGAATGTGTCGCTGGAATCGATGCCATGAAATCTAA
GCATCCTAATATCACTGAAAACGGCCCTAAAGGTAATTTGTCAACTTAAT
TTACTTTAAGAGCAGAAAATTTCACAGGCAGAAACATTTGCGAGGTAGCA
AAATCGCGAattttactttcgcgaattttactTTTGGAACGAATTCAGCG
GATAtgactttcgcgaattttagaatgttatttcattttgcaggaaaaaa
agcgaaaaaaaatgcacaaaaactgaaaacttagtataaaatagcaaaaa
aagtgtacttttcGCGGAAAAAACATTCACGAATTTTTCGTGTGATTTCT
TACTTGGCAAAAACTTTTGCGAAAAAGGACAAAAAttgtgaaagtttctg
cccATAAAGTAGAAGTTCCACGAGGACAATTTACAACCACTTTAGTCTTC
GGCCAGTATGCTAGCTATCAAAGCCGTTTTTATACGATACTTGCACTATG
AAGGCAAGGAAAAGTGATAAGATCACCTAGATTTAGTATTTTTTACACTT
TGGAACGGGTTTTAGATTCCTTCACGTTCCAGGGTGtgaaaccattgagt
ttcaagcccgaagagctagaggcgaaactttaacccttctcaggcaagag
aaattgaagctactcatctcccatccagaacgcgtcGTAATCATGAAGgt
ggattgtatctagcggctCCTTttttttggaggactacattctgttaaat
ctagcgatagattatagtttcaatccggcgtttatGTAAAAGCttcgcgc
gggcgttctggatgggaaataagtggtttcatttcccatcaggagtctcg
cctctagcccttcaggcttgaaACTCAGTGTATGAAACGTGCTTATCACA
ACCCAGTTGTAGATAAACTCTACTCACATTTTCTGTACAGTGGCAAAGCA
ACTAAACTTTCTTAGAGTCctaaattttcaacaaaaaaaaacaatttaaa
tcaTTGTTTATATTTTCAGGCATCGTAGGCGAATGGTACGTGCGCCGAAT
GTATGAGCCGTTATTTTACAACAACGTTACGATCAAACTGGATAAGATTT
TTGTCAAGAAACATGGTAAAAATGTTACGGATTATATTTTGGGATTGATG
GAACCAAACATCGGAAAACCAATACATGATATGTTACAGTAAGTGAAACT
AACCGTTCTATTTGTGAAATTCCTCCATCACTTCTAATCAATAGAATGGC
TTCGATTTGTTTCAAAGTGAAACGGAACCGTTACAACATGATCTTAGTAG
ACGAgaagattttaaaataataaaagacAACATTTGAAATTATTGAGGGT
CCCAATAATTtgagggtttttttttttttttttttttggctaaAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttt
tttttttttttttttcggctAGAACATACCTGTTATCTCGCAAAcctcac
aggaaaaaattttcgatttccaagtttggaaattcaatatttttgggttg
gaaattttggttttataattgaaggatggaaatttgagcgattactttaa
gctgatttggaaaacgtaaattacccataggttttgtagaataaaccaat
gccatTGAAatatcaagtgaaaaaaacccatgtagaaatgacaattttcc
aaggctggttggaaaacatgactttttgggtgggaaatttttattttcca
aacNGCATCCTAATATCACTGAAAACGGCCCTAAAGGTAATTTGTCAACT
TAATTTACTTTAAGAGCAGAAAATTTCACAGGCAGAAACATTTGCGAGGT
AGCAAAATCGCGAattttactttcgcgaattttactTTTGGAACGAATTC
AGCGGATAtgactttcgcgaattttagaatgttatttcattttgcaggaa
aaaaagcgaaaaaaaatgcacaaaaactgaaaacttagtataaaatagca
aaaaaagtgtacttttcGCGGAAAAAACATTCACGAATTTTTCGTGTGAT
TTCTTACTTGGCAAAAACTTTTGCGAAAAAGGACAAAAAttgtgaaagtt
tctgcccATAAAGTAGAAGTTCCACGAGGACAATTTACAACCACTTTAGT
CTTCGGCCAGTATGCTAGCTATCAAAGCCGTTTTTATACGATACTTGCAC
TATGAAGGCAAGGAAAAGTGATAAGATCACCTAGATTTAGTATTTTTTAC
ACTTTGGAACGGGTTTTAGATTCCTTCACGTTCCAGGGTGtgaaaccatt
gagtttcaagcccgaagagctagaggcgaaactttaacccttctcaggca
agagaaattgaagctactcatctcccatccagaacgcgtcGTAATCATGA
AGgtggattgtatctagcggctCCTTttttttggaggactacattctgtt
aaatctagcgatagattatagtttcaatccggcgtttatGTAAAAGCttc
gcgcgggcgttctggatgggaaataagtggtttcatttcccatcaggagt
ctcgcctctagcccttcaggcttgaaACTCAGTGTATGAAACGTGCTTAT
CACAACCCAGTTGTAGATAAACTCTACTCACATTTTCTGTACAGTGGCAA
AGCAACTAAACTTTCTTAGAGTCctaaattttcaacaaaaaaaaacaatt
taaatcaTTGTTTATATTTTCAGGCATCGTAGGCGAATGGTACGTGCGCC
GAATGTATGAGCCGTTATTTTACAACAACGTTACGATCAAACTGGATAAG
ATTTTTGTCAAGAAACANATTTCTcgaaacagtttggaaaacgttaaaaa
tccatgtggaaaatacatttttgtgaaattgaaactctttcgattggaaa
actagacttgttgggttggaaatttgtgtttctccaaacagtttggaaaa
cgttaaaaatccatgtggaaattacatttttgtgaaattgaaactctttc
gattggaaaactagactttttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002088XLOC_002088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003739-exon-sc0000031-1491911889:401103..401178TCONS_00003739-exon-sc0000031-1491911889:401103..401178Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1510915933:401103..401178TCONS_00003739-exon-sc0000031-1510915933:401103..401178Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1575043694:401103..401178TCONS_00003739-exon-sc0000031-1575043694:401103..401178Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1491911889:402169..402760TCONS_00003739-exon-sc0000031-1491911889:402169..402760Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1510915933:402169..402760TCONS_00003739-exon-sc0000031-1510915933:402169..402760Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1575043694:402169..402760TCONS_00003739-exon-sc0000031-1575043694:402169..402760Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1491911889:403755..404052TCONS_00003739-exon-sc0000031-1491911889:403755..404052Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1510915933:403755..404052TCONS_00003739-exon-sc0000031-1510915933:403755..404052Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1575043694:403755..404052TCONS_00003739-exon-sc0000031-1575043694:403755..404052Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1491911889:404298..404384TCONS_00003739-exon-sc0000031-1491911889:404298..404384Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1510915933:404298..404384TCONS_00003739-exon-sc0000031-1510915933:404298..404384Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1575043694:404298..404384TCONS_00003739-exon-sc0000031-1575043694:404298..404384Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1491911889:407026..407325TCONS_00003739-exon-sc0000031-1491911889:407026..407325Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1510915933:407026..407325TCONS_00003739-exon-sc0000031-1510915933:407026..407325Clytia hemisphaericaexon
TCONS_00003739-exon-sc0000031-1575043694:407026..407325TCONS_00003739-exon-sc0000031-1575043694:407026..407325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:401103..407325 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301688	3.84959	2.53626	1.92337	3.43324	1.64915	10.3346	11.5911	0.707415	4.14641	0.0505016	1.39998	2.1919	4.01242	1.28269	1.20852	4.73009	2.67226	2.07538	1.03623	3.02396	4.32952	0.612331	0.899818	5.72404	7.31722	5.08204	2.85465	0.713057	1.31775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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