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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003729 ID=TCONS_00003729|Name=TCONS_00003729|organism=Clytia hemisphaerica|type=transcript|length=1936bp
ATGGAACAAATAAACAATACTTACGGCCAAAATATTTCGACGAAATTTCC
CAACAACTGTTGTCCACCCATCAAAATGACCAATTGTATACAAAGTTCAA
GAAAGCAACCTTGCTCTGAACATCCTTCAAGGCGACTTCTCTTGGTCCCA
AACCTCCTATAATTACCAGGGTATCCAacgaaaaattcacttttgaagAA
AGCAACATAAAAAACGGACGAGAACATATTACAGAATTGGAACCAGAACA
TCTTCAAAGTGAAGGACTTCTCATAAGAAGTTCGTGTTCTTGGGTTCTCC
CATTCTGTCATAATCAAAGCTAATTTGCGATAAACCAACTTTAACACGTT
AATGACGATTAAATTAATCGTAGCTGCTGTGCCGGTCACAaacagttttg
aattttttcttaaacGACCATCAGCTGCGATAAGGATCCCGAAAATGACG
GCACGATACACGATAACGCCGATTAAAGCTGCGATTACGAGTGCGATGAA
GAATAATACGACTGAAGCTTCACCGGCGATTTTAAGCATTTGTTCTTTCT
TGGATGCGATCGGTTCCATTTTTCGGGTAATCGGGTTCTGTTTAAATTTC
TTGGCCGATGCTGTGTATTGAGGTCTCACGACTTCTTCTTCACAAAAATC
CATCGTGTGCCATTCATAAGAAAGACTCCACTGTTGTCTTTTCCAATATT
CCagataaaatacagaccagattgAAATGAATACGGCGAAAATGGGAGTA
CCGTCGTTATCGAAACAGTGAGTCATTTTGGAGTAAGTGCATGAAGTGTT
GTGTAAGAAATAGTACGAACAAACTTTATCGCATAATGGACACATGAAAA
ATGGCTTTTCGGCGTTACATATTTCTTGGACCGGTATAAACCATAAGTTT
GACAGACAaccaaaaaagaagaaaattaaaccAATCAGGGATGCTGGAAC
GAGCCACGTGGTATAGAACCCAATCCACGCAAAATAAAACGCGATTTTAA
CACCGAAGTATTCTTTAATACCTTCAATGGGTTGGTATTTAAAAGTTTGT
CCGAATGACGCCCATTCACGGGATAATTTTTGACGGTTGTTTAATAAAGG
TTCGTTTTCGTTGGGTTCGAGCAAGCCGTCATGAATAGGGTAGGCGGCCG
TTAGAACGCCTTTTTCTAATAATCCGTCTTTCCCGATTTCATCATCATTA
TCACCGTACTTCGTGCTTTCCAGGATGTAAGCTACTATCCGGGACCTTTC
CGTAggtgaaaacattttttctgggTTATTCCCGTTATGAAATTCTTCGA
CTCGATCTTTATCGAAGTTGTCGGCAAAATATGATTCGGGTTTGGAGAAA
TATGAATTGTGAACGAGGAatgggtttttcttgttccacCATTCTAAAAT
TCGTTTGGTCAACTTCTCATACCAAAGCATGACAACGATGTCGTTTTTGA
CGGTTGGTAAACGGACATTCAAATCTTCTGCTGTGTCAGCAAGAACGTCG
AACGGAGCGTGAACATGCCAAAAATAAGTCTTTTCATCCTGGAAGTGATA
TAaaagttacatgttttttatctTGATATGTGCAAGCTATAAAAGAAACT
TACTTAAGAGAAACACAGTGGTCAAAcccggcttttttgggtgcttctgt
TAGAAAATTTGACGTCGTCTTGACTTACACATACAAAGGATAGACTCTTC
TCATTATTTTAAGAAAGAGAGAATCGTTTTGGGTAAGGTTGCACTTCCAG
CTTCCAGAGGAAAATCAGCACCTTTGGAACGCTAACCAGTTACCTAAGTC
AACATAAGATTTTCCGTACCGCTAGAAAACACCACATTTTACAGTTTAGG
GCCGGCTATCCGGAAATAAAACAGCGGAAACATCCTGGGAAGGTTAGTGG
AACCTCAGCTTCAATCTAAAAGATTGAGTCTGAAAG Run BLAST on NCBI transcript from alignment at sc0000031:236861..239363+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003729 ID=TCONS_00003729|Name=TCONS_00003729|organism=Clytia hemisphaerica|type=transcript|length=2503bp|location=Sequence derived from alignment at sc0000031:236861..239363+ (Clytia hemisphaerica)
ATGGAACAAATAAACAATACTTACGGCCAAAATATTTCGACGAAATTTCC
CAACAACTGTTGTCCACCCATCAAAATGACCAATTGTATACAAAGTTCAA
GAAAGCAACCTTGCTCTGAACATCCTTCAAGGCGACTTCTCTTGGTCCCA
AACCTCCTATAATTACCAGGGTATCCAacgaaaaattcacttttgaagAA
AGCAACATAAAAAACGGACGAGAACATATTACAGAATTGGAACCAGAACA
TCTTCAAAGTGAAGGACTTCTCATAAGAAGTTCGTGTTCTTGGGTTCTCC
CATTCTGTCATAATCAAAGCTAATTTGCGATAAACCAACTTTAACACGTT
AATGACGATTAAATTAATCGTAGCTGCTGTGCCGGTCACAaacagttttg
aattttttcttaaacGACCATCAGCTGCGATAAGGATCCCGAAAATGACG
GCACGATACACGATAACGCCGATTAAAGCTGCGATTACGAGTGCGATGAA
GAATAATACGACTGAAGCTTCACCGGCGATTTTAAGCATTTGTTCTTTCT
TGGATGCGATCGGTTCCATTTTTCGGGTAATCGGGTTCTGTTTAAATTTC
TTGGCCGATGCTGTGTATTGAGGTCTCACGACTTCTTCTTCACAAAAATC
CATCGTGTGCCATTCATAAGAAAGACTCCACTGTTGTCTTTTCCAATATT
CCagataaaatacagaccagattgAAATGAATACGGCGAAAATGGGAGTA
CCGTCGTTATCGAAACAGTGAGTCATTTTGGAGTAAGTGCATGAAGTGTT
GTGTAAGAAATAGTACGAACAAACTTTATCGCATAATGGACACATGAAAA
ATGGCTTTTCGGCGTTACATATTTCTTGGACCGGTATAAACCATAAGTTT
GACAGACAaccaaaaaagaagaaaattaaaccAATCAGGGATGCTGGAAC
GAGCCACGTGGTATAGAACCCAATCCACGCAAAATAAAACGCGATTTTAA
CACCGAAGTATTCTTTAATACCTTCAATGGGTTGGTATTTAAAAGTTTGT
CCGAATGACGCCCATTCACGGGATAATTTTTGACGGTTGTTTAATAAAGG
TTCGTTTTCGTTGGGTTCGAGCAAGCCGTCATGAATAGGGTAGGCGGCCG
TTAGAACGCCTTTTTCTAATAATCCGTCTTTCCCGATTTCATCATCATTA
TCACCGTACTTCGTGCTTTCCAGGATGTAAGCTACTATCCGGGACCTTTC
CGTAggtgaaaacattttttctgggTTATTCCCGTTATGAAATTCTTCGA
CTCGATCTTTATCGAAGTTGTCGGCAAAATATGATTCGGGTTTGGAGAAA
TATGAATTGTGAACGAGGAatgggtttttcttgttccacCATTCTAAAAT
TCGTTTGGTCAACTTCTCATACCTAGGAACAAAAATTGTATGATTATGag
tgaaaatatttaataaattcCACACATTCAGGATTCCATAAAATATTTCC
TCGAAAAGAACATCAATATTAAAAGAAGATCCCAATTTATTTAGACAAAC
AACATCCAAAAACATCGAAGAGCCCCCTCCCTCCAGTGGaatccaaaaga
aattctaatcACGTTATCACGCCAAGAATATCTTCTCATCATTCGCCATC
AAACCAAAATAATTCTCTTATCAACCAGACATAACACTTTTTGAACTCGA
AGATTAcaccatcacgccatcacgccatcGAACCGAAATAATTCTCTTAA
ATAAATCACATATCAACGCTTTTTGAACTCATAGATCAATCCATAAAAAG
CCCAATCATGCCACCACGCTGGGGGCCTCGTCGAACGTTCAAAGAGACCG
AACAGAAATTATtccatgacgtcattttgccccTGTTTTGGCGTACCAGT
ATTACCGACAACGTCGTATGTTACGCTAGCTGGGTAGTCATTACCTCATC
CCTGTTTTAtggaaatttatttcaaaaacggATACATACCAAAGCATGAC
AACGATGTCGTTTTTGACGGTTGGTAAACGGACATTCAAATCTTCTGCTG
TGTCAGCAAGAACGTCGAACGGAGCGTGAACATGCCAAAAATAAGTCTTT
TCATCCTGGAAGTGATATAaaagttacatgttttttatctTGATATGTGC
AAGCTATAAAAGAAACTTACTTAAGAGAAACACAGTGGTCAAAcccggct
tttttgggtgcttctgtTAGAAAATTTGACGTCGTCTTGACTTACACATA
CAAAGGATAGACTCTTCTCATTATTTTAAGAAAGAGAGAATCGTTTTGGG
TAAGGTTGCACTTCCAGCTTCCAGAGGAAAATCAGCACCTTTGGAACGCT
AACCAGTTACCTAAGTCAACATAAGATTTTCCGTACCGCTAGAAAACACC
ACATTTTACAGTTTAGGGCCGGCTATCCGGAAATAAAACAGCGGAAACAT
CCTGGGAAGGTTAGTGGAACCTCAGCTTCAATCTAAAAGATTGAGTCTGA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003729-exon-sc0000031-1491911889:236861..238278 | TCONS_00003729-exon-sc0000031-1491911889:236861..238278 | Clytia hemisphaerica | exon |
| TCONS_00003729-exon-sc0000031-1510915933:236861..238278 | TCONS_00003729-exon-sc0000031-1510915933:236861..238278 | Clytia hemisphaerica | exon |
| TCONS_00003729-exon-sc0000031-1575043694:236861..238278 | TCONS_00003729-exon-sc0000031-1575043694:236861..238278 | Clytia hemisphaerica | exon |
| TCONS_00003729-exon-sc0000031-1491911889:238846..239363 | TCONS_00003729-exon-sc0000031-1491911889:238846..239363 | Clytia hemisphaerica | exon |
| TCONS_00003729-exon-sc0000031-1510915933:238846..239363 | TCONS_00003729-exon-sc0000031-1510915933:238846..239363 | Clytia hemisphaerica | exon |
| TCONS_00003729-exon-sc0000031-1575043694:238846..239363 | TCONS_00003729-exon-sc0000031-1575043694:238846..239363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:236861..239363 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
BLAST of TCONS_00003729 vs. Swiss-Prot (Human)
Match: ANO4 (Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.623e-92 Identity = 201/520 (38.65%), Postives = 296/520 (56.92%), Query Frame = -3
Query: 24 FWHVHAPFDVLADTAEDLNVRLPTVKNDIVVMLWY------EKLTKRILEWWNKKN--------PFLVHNSYFSKPESYFADNFDKDRVEEFHNGNNPEKMFSPTERSRIVAYILESTKYGDNDDEIGKDGLLEKGVLTAAYPIHDGXXXXXXXXXXXXN---RQKLSREWASFGQTFKYQPIEGIKEYFGVKIAFYFAWIGFYTTWLVPASXXXXXXXXXGCLSNLWFIPVQEICNAEKPFFMCPLCDKVCSYYFLHNTSCTYSKMTHCFDNDGTPIFAVFISIWSVFYLEYWKRQQWSLSYEWHTMDFCEEEV-VRPQYTAS-AKKFKQNPITRKMEPIASKKEQMLKIAGEASXXXXXXXXXXXXXIGVIVYRAVIFGILIAAD-GRLRKNSKLFVTGTAATINLIVINVLKLVYRKLALIMTEWENPRTRTSYEKSFTLKMFWFQFCNMFSSVFYVAFFKSEFFVGYPGNYRRFGTKRSRLEGCSEQGCFLELCIQLVILMGGQQLLGNFVEIFWP 1523
F +HAP++VL AE +NVR+P + + Y +K R W KK P L N ++ P F + R+ F +N E F+ RSRIV +IL+ KY + ++IG + LL G AA+P+H+G + R L WAS+G +KYQP++ ++ YFG KI YFAW+G+YT L PA+ IGL F +G + +E+C A MCP+CDK C + L + SC Y+K+TH FDN T FAVF+++W+ +LE+WKR++ ++Y+W +D+ EEE +RPQ+ A +KK + NPI+ K EP + ++ ++ AS + F I +VIAA+ G+++YR V A +R NS++ TGTA IN +I +L ++Y K+AL++T E PRT + +E SFTLKMF FQF N+ SS FY+AFF F G+PG Y R R RLE C GC ++LC+Q+ I+M +Q NF+E+ +P
Sbjct: 162 FVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAP-------FSQQRIHHFII-HNKETFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIRTHGAENHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVTTLDHSQVSKEVCQATD-IIMCPVCDKYCPFMRLSD-SCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFTDKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGR-FTGHPGAYLRL-INRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYP 669
The following BLAST results are available for this feature:
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