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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003727 ID=TCONS_00003727|Name=TCONS_00003727|organism=Clytia hemisphaerica|type=transcript|length=5294bpRun BLAST on NCBI transcript from alignment at sc0000031:211151..222429+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003727 ID=TCONS_00003727|Name=TCONS_00003727|organism=Clytia hemisphaerica|type=transcript|length=11279bp|location=Sequence derived from alignment at sc0000031:211151..222429+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003727 vs. Swiss-Prot (Human)
Match: PAPP1 (Pappalysin-1 OS=Homo sapiens GN=PAPPA PE=1 SV=3) HSP 1 Score: 355.525 bits (911), Expect = 0.000e+0 Identity = 274/931 (29.43%), Postives = 422/931 (45.33%), Query Frame = 3
Query: 2295 VTIAWHPPVGSGKQHQRFKCQDCQR--NNREKQQYVQKVAFNNETSTSNSLYSLNKIIGPPDAKTTCSRDGNTWFRQHPGIND-------------YLDVWFSKAVVPTGLNIWI-----NYDASDSIEDLQVIHTDGSKTSLGPISTNCRTPFTT-LVKITKPTKHLRLHLTKDIHRKPSIDAIMLISRKTFDEKKCRNCEKLQLRYRVYRQPQFKGSKLYRCSETVSFTDKGVEPNTLYTYRIQAXXXXXXXXXXXXXTFRQSDGFCGNGIIEKHRGEECDDSNLRDGDGCDVECRIEAVFNCKLEPSLCYRYDRDGVCEEEERKLETRDCGLYTPNGYIDQWAIDIKGKPLQSSNEFCPEHIITGTPPTDLKCVDGIAEVDPKI---GWRPCNGFNPETFEIFEDYWIEAHFETSVHPVAVIVHISSDGRFDPFSPNETLSIRLRDDQGKLEVINSRVDISCKSNPIYVKVDNNSIK----SKIVRIDFATSNLAISGIAMRY------LKPKICPRNQIYDKITKTCQPRTEEILPCPELTLPNANTTCSND----GQSCSVKCHVGFK----------RANQNPSL---CDHGTWRNAIGCSIIDCGQP----VIENSKSACGHTTFGSDCSFICDPGTSQHGFINKITCQSNGHWSKQHSFCVKFCAESPLKEKMETYKEQLPGCLLMEGSKNGMGARCRLQCKRGYRASQKLNDRYQPNIINALCNQNGRWSYDNDCDKITC-PLSGYQKMLYSCTDDNRYGSMCSTNCSGTKA-----ENKIECLNTGEWSGSLDVCKSNK---------------QCPKLEDTNGVKFSSCHDTRVGSSCQPTCDLRKDLVNQKSPTRIKSAGDQNELLYCMPHTRWSRSATDFRCEEKCYIGGIGDSFCDCQNNRAHCDFDGGDCCKTPVR 4859
VT+ W PP+ G +R C R QY + S S +S + G PD + C TW + +N YL++ F +VP L IW+ ++D+S ++ D++++ G SLGP + C P T L + + ++++ T D H + IDA ML S T D C C+ L +Y+V R P + F D + ++Y Y + +SG+ +S+ SP +T+ G+CG+GII+K +GE+CDD N +GDGC + CR E FNC EPS CY +D DGVCEE E+K +DCG+YTP G++DQWA + + ++ CP +I G P C + ++ I W PC P + +W+ A+F + AVIVH+ +DG + ET+S++L D + + + V +SC++NP+ + V ++ + S+ VR+ F++ +AISG+A+R + C R + Y ++C E CPEL + NA+ CS+ G C+V C G+ ++ PS+ C G W + C +DC P V S S TTFGS CSF C G + +TC +G WS + C C P + Q C +K+ +G+ C+ +CK GY + + + C Q+G W + C +TC P LY CT+ ++ S C C + A N I C G W+GS VC+ + QCP +SC D S P +D+ + +PTR+ E + C +W C + C +GD++CD NNRA C++DGGDCC + V+
Sbjct: 689 VTLEWFPPI-DGHFFERELGSACHLCLEGRILVQYASNASSPMPCSPSGH-WSPREAEGHPDVEQPCKSSVRTW-SPNSAVNPHTVPPACPEPQGCYLELEFLYPLVPESLTIWVTFVSTDWDSSGAVNDIKLLAVSGKNISLGPQNVFCDVPLTIRLWDVGEEVYGIQIY-TLDEHLE--IDAAMLTS--TADTPLCLQCKPL--KYKVVRDPPLQMDVASILHLNRKFVDMDLNLGSVYQYWVITISGTEESEPSPAVTYIHGSGYCGDGIIQKDQGEQCDDMNKINGDGCSLFCRQEVSFNCIDEPSRCYFHDGDGVCEEFEQKTSIKDCGVYTPQGFLDQWASNAS---VSHQDQQCPGWVIIGQPAASQVCRTKVIDLSEGISQHAWYPCTISYPYSQLAQTTFWLRAYFSQPMVAAAVIVHLVTDGTYYGDQKQETISVQLLDTKDQSHDLGLHV-LSCRNNPLIIPVVHDLSQPFYHSQAVRVSFSSPLVAISGVALRSFDNFDPVTLSSCQRGETYSPAEQSCVHFACEKTDCPELAVENASLNCSSSDRYHGAQCTVSCRTGYVLQIRRDDELIKSQTGPSVTVTCTEGKWNKQVACEPVDCSIPDHHQVYAASFSCPEGTTFGSQCSFQCRHPAQLKGNNSLLTCMEDGLWSFPEALCELMCLAPP---PVPNADLQTARC---RENKHKVGSFCKYKCKPGYHVPGS-SRKSKKRAFKTQCTQDGSWQ-EGACVPVTCDPPPPKFHGLYQCTNGFQFNSECRIKCEDSDASQGLGSNVIHCRKDGTWNGSFHVCQEMQGQCSVPNELNSNLKLQCPDGYAIGSECATSCLDHNSESIILPMNVTVRDIPHWLNPTRV-------ERVVCTAGLKWYPHPALIHCVKGCE-PFMGDNYCDAINNRAFCNYDGGDCCTSTVK 1589 HSP 2 Score: 303.138 bits (775), Expect = 0.000e+0 Identity = 210/641 (32.76%), Postives = 324/641 (50.55%), Query Frame = 1
Query: 475 KRRISNRQLRAENSVAYFYGH-EIIRY-SNLDLNFDRFTISFWIYAEGGQQNNAPIVRIYNHCSFVELS-ALSFGIRTIE----LETIVYFXXXXXXXXXXXXXXXXXPIKIQTWVHIAGSYDGHKLVLYVNQAKVAASYEQKGIFTSNVYPKCTTLDVGGDSENHLHYRGAVDHILIVNEALNHRTI-----SRKPFVNLKKLFVLRENFESKYNNGYHTVHGHSPGLIKREVKSEEQ--VEVKLEIPKCGHAICDNSEVIQNYVTHPNTYMSLKKIRYRVVLITQDDRRKCRLTTNDIQKRHKYLVSVFNRENIHLHLDIVKFRNSNLCNKTVLISCYRPCPDDTVHCQQSIPVDPVGCDRKCTPD-----------------------KLNNGHCDIECNNPDGNNDWDQGDCCNPKVTDVTSTCYDPKSPYRAFIEERELKKHLNLSNKEAL-VIYPVSLPANFLGKSTYPWTEDIYGVNGGITMNYKSFLPSSDGKEN-VNDIIHELGHALGLWHVHRGVSEV-SCTNECIEDSPSMITGDLCSDTTPTPINYKCEDRVLHHRQCNGKNESMVYQNTPYKNYMGYVTGSCASEFTKQQRARMHCYLDSHYQRWQINSVPPSTIPLKPSLVSYKNKA 2277
+ R + + + YF G E +R ++L+L D FT+ W+ AEGGQ++ A I +Y+ CS++ GI TI + +F++ T ++ +TI + WV++A +YDG + LYVN A+VA S EQ G S + KC L +GG + NH +YRG ++H + A R I + L +L +L+EN+++ + G SP K E + ++ LE P CG +CDN+EVI +Y +++ K +RYRVV + +DD + +T + +H L F + NI LD+++ NS+L + +L +C + +G D C P+ K +NG CD++CN N +D G+CC+P++T+VT TC+DP SP+RA+++ ELK L L L + + S G +T+PW ++ GGI +N PS G + +IHE+GH+LGL+HV RG+SE+ SC++ C+E PS TGDLC+DT P P + C D + C + + NTPY N+M Y C FT Q ARMHCYLD YQ WQ S P+ + L P ++ + +
Sbjct: 82 EARGATEEPSPPSRALYFSGRGEQLRLRADLELPRDAFTLQVWLRAEGGQRSPAVITGLYDKCSYISRDRGWVVGIHTISDQDNKDPRYFFSLKTDRARQVTTINAHRSYLPGQWVYLAATYDGQFMKLYVNGAQVATSGEQVGGIFSPLTQKCKVLMLGGSALNH-NYRGYIEHFSLWKVARTQREILSDMETHGAHTALPQL-LLQENWDNVKHAWSPMKDGSSP---KVEFSNAHGFLLDTSLEPPLCGQTLCDNTEVIASY-NQLSSFRQPKVVRYRVVNLYEDDHKNPTVTREQVDFQHHQLAEAFKQYNISWELDVLEVSNSSLRRRLILANC---------------DISKIG-DENCDPECNHTLTGHDGGDCRHLRHPAFVKKQHNGVCDMDCNYERFN--FDGGECCDPEITNVTQTCFDPDSPHRAYLDVNELKNILKLDGSTHLNIFFAKSSEEELAGVATWPWDKEALMHLGGIVLN-----PSFYGMPGHTHTMIHEIGHSLGLYHVFRGISEIQSCSDPCMETEPSFETGDLCNDTNPAPKHKSCGDPGPGNDTCGFHS----FFNTPYNNFMSYADDDCTDSFTPNQVARMHCYLDLVYQGWQ-PSRKPAPVALAPQVLGHTTDS 688 The following BLAST results are available for this feature:
BLAST of TCONS_00003727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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