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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003719 ID=TCONS_00003719|Name=TCONS_00003719|organism=Clytia hemisphaerica|type=transcript|length=2787bpRun BLAST on NCBI protein sequence of TCONS_00003719-protein >TCONS_00003719-protein ID=TCONS_00003719-protein|Name=TCONS_00003719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp MRFQLFFDNCLVLVSIFFYIQKCDGSHVKYKGCKVYQIEAKDESQIQKIKRun BLAST on NCBI transcript from alignment at sc0000031:16213..28705+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003719 ID=TCONS_00003719|Name=TCONS_00003719|organism=Clytia hemisphaerica|type=transcript|length=12493bp|location=Sequence derived from alignment at sc0000031:16213..28705+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000031:16213..28705+ >TCONS_00003719 ID=TCONS_00003719|Name=TCONS_00003719|organism=Clytia hemisphaerica|type=CDS|length=12177bp|location=Sequence derived from alignment at sc0000031:16213..28705+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003719 vs. Swiss-Prot (Human)
Match: CBPA6 (Carboxypeptidase A6 OS=Homo sapiens GN=CPA6 PE=1 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 2.524e-52 Identity = 134/446 (30.04%), Postives = 218/446 (48.88%), Query Frame = 2
Query: 623 LVLVSIFFYIQKCDGSHV---KYKGCKVYQIEAKDESQIQKIKRFIKSFPTQIDVWSDSP-------QHCQLMVTKEQSIKLDAYLSKENIQRKILIKDVQKAIDKELEDNDERVKQNVYSAFRRRRIFNYKRFNRFFDILHELKRLQCRFKKKMEIMEIGRSYERRPLVVVKITKNVLNECISNKKIVWIDGGVHSREWISVAGAMWMIKELLISKKA--SIQKLLETHVFYIAPVFNPDGYEYTFTDDRLWRKTRRPTNKKGCIGTDVNRNWNFKWGLDEKNKEPCGLTYHGEKPESEICVQHFARLFRYIQPRLLSYWTLHSYGQLVYVPYSYTSEFSPYVSDLIQALFVFREKAKSRNNQFYGLGTTHVLENGLLLF--GTSIDYIHGALNITYSFNVEMRPSEATLGQNQNPTELFLLSPKSIVPASSEVFDGIIGTVEHI 1918
L L +F I + SH+ +Y G KV + K E + +K+ S+ ++D+W S + + + S L A+L + NIQ K+LI+D+QK ++K + +R ++++ +NY+ ++ +I + + L + + IGRSYE R L ++K+ + K+ VWID G+H+REWI A W +KE L++ K+ +++K+L FYI PVFN DGY +++T+DR WRKTR ++ C G D NRNW KW + + PC TY G PESE V+ A R + + +Y + H+Y Q++ PYSY P + A + KA + YG+ + + L G+S+D+ + I Y+F E+R + G FLL I P +E + H+
Sbjct: 15 LPLCWLFLKILQPGHSHLYNNRYAGDKVIRFIPKTEEEAYALKKI--SYQLKVDLWQPSSISYVSEGTVTDVHIPQNGSRALLAFLQEANIQYKVLIEDLQKTLEKGSSLHTQRNRRSLSG-------YNYEVYHSLEEIQNWMHHLNKTHSGLIHMFSIGRSYEGRSLFILKLGRRS-----RLKRAVWIDCGIHAREWIGPAFCQWFVKEALLTYKSDPAMRKMLNHLYFYIMPVFNVDGYHFSWTNDRFWRKTRSRNSRFRCRGVDANRNWKVKWCDEGASMHPCDDTYCGPFPESEPEVKAVANFLRKHRKHIRAYLSFHAYAQMLLYPYSYKYATIPNFRCVESAAY----KAVNALQSVYGVRYRYGPASTTLYVSSGSSMDWAYKN-GIPYAFAFELRDT-GYFG--------FLLPEMLIKPTCTETMLAVKNITMHL 432 The following BLAST results are available for this feature:
BLAST of TCONS_00003719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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