TCONS_00003715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003715
Unique NameTCONS_00003715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003715 ID=TCONS_00003715|Name=TCONS_00003715|organism=Clytia hemisphaerica|type=transcript|length=745bp
GTGGCGTCAAATGCATAGTGATGTTACGAAAGATTGATATAATGGATAGT
GCCAACCGCAAAATTTGCATTTGACAGATGTTTTTTATGGATCCGTTGAC
GAGCTTCTCAAGAAGACTTTGCCAAGAACTCAATCTTGCTCCTCTCATTA
GACAATGTAAACAAAGTTTACAATTTTTACAgcatatatttttattactt
ttacattcaaaattattttcaatacaGTGTTTGCATTTATGTTTCCCACA
TATCCCATCGTCGTTGACACAGCATCCTTTCTTACACTTTTCTTTTCCAC
AATTGGGACATTTGTGATCACAGTCAGAGCAACATTTATTCAGATGGTTG
GCAGAATTTTTGCAACTCCACCTGGCTAAAAACTTTGTATCACATGTAGG
AAAATCTTCTATTTCCCGAAGAATTTCAATGAGAAGATTTATGTCCAGTG
ATGAAATTTCAATTGATGGCtgaaataaatcatttctttTATCTTGATAA
ACCAACTTGATAACTCCAGGGTTGTTGGTGATattagaaaagtttttaac
tttaTCCTTTTGTCTTgtaaaaattttacttaaagCAATACCACCATCTG
TTTCTGCTGGCTCAGCTAATAAGGCGAAATGTGCAAGAAGTTTGTGAAGT
GCATACTGCCCTACAGAGATTACCACAAAAAGTTGTTGATGATGAAGATG
CAATGTGTCATTTGAAGCCATCGTAAATCATTTTTAATGTTtcct
Run BLAST on NCBI

protein sequence of TCONS_00003715-protein

>TCONS_00003715-protein ID=TCONS_00003715-protein|Name=TCONS_00003715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MASNDTLHLHHQQLFVVISVGQYALHKLLAHFALLAEPAETDGGIALSKI
FTRQKDKVKNFSNITNNPGVIKLVYQDKRNDLFQPSIEISSLDINLLIEI
LREIEDFPTCDTKFLARWSCKNSANHLNKCCSDCDHKCPNCGKEKCKKGC
CVNDDGICGKHKCKHCIENNFECKSNKNICCKNCKLCLHCLMRGARLSSW
QSLLEKLVNGSIKNICQMQILRLALSIISIFRNITMHLTP
Run BLAST on NCBI

transcript from alignment at sc0000030:840326..841070

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003715 ID=TCONS_00003715|Name=TCONS_00003715|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at sc0000030:840326..841070 (Clytia hemisphaerica)
aggaAACATTAAAAATGATTTACGATGGCTTCAAATGACACATTGCATCT
TCATCATCAACAACTTTTTGTGGTAATCTCTGTAGGGCAGTATGCACTTC
ACAAACTTCTTGCACATTTCGCCTTATTAGCTGAGCCAGCAGAAACAGAT
GGTGGTATTGctttaagtaaaatttttacAAGACAAAAGGAtaaagttaa
aaacttttctaatATCACCAACAACCCTGGAGTTATCAAGTTGGTTTATC
AAGATAaaagaaatgatttatttcaGCCATCAATTGAAATTTCATCACTG
GACATAAATCTTCTCATTGAAATTCTTCGGGAAATAGAAGATTTTCCTAC
ATGTGATACAAAGTTTTTAGCCAGGTGGAGTTGCAAAAATTCTGCCAACC
ATCTGAATAAATGTTGCTCTGACTGTGATCACAAATGTCCCAATTGTGGA
AAAGAAAAGTGTAAGAAAGGATGCTGTGTCAACGACGATGGGATATGTGG
GAAACATAAATGCAAACACtgtattgaaaataattttgaatgtaaaagta
ataaaaatatatgcTGTAAAAATTGTAAACTTTGTTTACATTGTCTAATG
AGAGGAGCAAGATTGAGTTCTTGGCAAAGTCTTCTTGAGAAGCTCGTCAA
CGGATCCATAAAAAACATCTGTCAAATGCAAATTTTGCGGTTGGCACTAT
CCATTATATCAATCTTTCGTAACATCACTATGCATTTGACGCCAC

Coding sequence (CDS) from alignment at sc0000030:840326..841070

>TCONS_00003715 ID=TCONS_00003715|Name=TCONS_00003715|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000030:840326..841070 (Clytia hemisphaerica)
ATGGCTTCAAATGACACATTGCATCTTCATCATCAACAACTTTTTGTGGT
AATCTCTGTAGGGCAGTATGCACTTCACAAACTTCTTGCACATTTCGCCT
TATTAGCTGAGCCAGCAGAAACAGATGGTGGTATTGctttaagtaaaatt
tttacAAGACAAAAGGAtaaagttaaaaacttttctaatATCACCAACAA
CCCTGGAGTTATCAAGTTGGTTTATCAAGATAaaagaaatgatttatttc
aGCCATCAATTGAAATTTCATCACTGGACATAAATCTTCTCATTGAAATT
CTTCGGGAAATAGAAGATTTTCCTACATGTGATACAAAGTTTTTAGCCAG
GTGGAGTTGCAAAAATTCTGCCAACCATCTGAATAAATGTTGCTCTGACT
GTGATCACAAATGTCCCAATTGTGGAAAAGAAAAGTGTAAGAAAGGATGC
TGTGTCAACGACGATGGGATATGTGGGAAACATAAATGCAAACACtgtat
tgaaaataattttgaatgtaaaagtaataaaaatatatgcTGTAAAAATT
GTAAACTTTGTTTACATTGTCTAATGAGAGGAGCAAGATTGAGTTCTTGG
CAAAGTCTTCTTGAGAAGCTCGTCAACGGATCCATAAAAAACATCTGTCA
AATGCAAATTTTGCGGTTGGCACTATCCATTATATCAATCTTTCGTAACA
TCACTATGCATTTGACGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002075XLOC_002075Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003715-proteinTCONS_00003715-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003715-exon-sc0000030-1491911889:840326..841070TCONS_00003715-exon-sc0000030-1491911889:840326..841070Clytia hemisphaericaexon
TCONS_00003715-exon-sc0000030-1510915933:840326..841070TCONS_00003715-exon-sc0000030-1510915933:840326..841070Clytia hemisphaericaexon
TCONS_00003715-exon-sc0000030-1575043694:840326..841070TCONS_00003715-exon-sc0000030-1575043694:840326..841070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:840326..841070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.5814	2.84	2.17336	1.68637	7.76568	5.14905	4.51017	5.65637	2.62151	3.79988	1.40824	1.98369	3.3896	3.4287	4.58534	6.2518	1.93785	4.07432	6.33251	4.71219	3.1998	3.46487	1.8973	3.31185	2.20302	2.9175	3.53962	2.13094	2.3509	3.66764
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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