TCONS_00003714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003714
Unique NameTCONS_00003714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003714 ID=TCONS_00003714|Name=TCONS_00003714|organism=Clytia hemisphaerica|type=transcript|length=272bp
ACCGAGATTGAATGTCATATCACAGTTTAATACTGAACATTGCACGTTTT
CAGGTGGAGTGCAAAATTTTGCAAGAGAATCGACTTGTTCTTTTGTGTAG
AGTATAACCGTGGGCGTGTTTTCATCAACAAATACCTAAAGGATGAAATT
ATGattaaaacaaaaatgcaaCACACAAATTTATGCACAGCACCAGACCC
CATTACAACGGGGGAGGGGGTGGAAGTGCAGCACTTTTTTGGGGGAGCTA
AGGTACttgggggagctaaaat
Run BLAST on NCBI

transcript from alignment at sc0000030:836158..836429

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003714 ID=TCONS_00003714|Name=TCONS_00003714|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at sc0000030:836158..836429 (Clytia hemisphaerica)
attttagctcccccaaGTACCTTAGCTCCCCCAAAAAAGTGCTGCACTTC
CACCCCCTCCCCCGTTGTAATGGGGTCTGGTGCTGTGCATAAATTTGTGT
GttgcatttttgttttaatCATAATTTCATCCTTTAGGTATTTGTTGATG
AAAACACGCCCACGGTTATACTCTACACAAAAGAACAAGTCGATTCTCTT
GCAAAATTTTGCACTCCACCTGAAAACGTGCAATGTTCAGTATTAAACTG
TGATATGACATTCAATCTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002074XLOC_002074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003714-exon-sc0000030-1491911889:836158..836429TCONS_00003714-exon-sc0000030-1491911889:836158..836429Clytia hemisphaericaexon
TCONS_00003714-exon-sc0000030-1510915933:836158..836429TCONS_00003714-exon-sc0000030-1510915933:836158..836429Clytia hemisphaericaexon
TCONS_00003714-exon-sc0000030-1575043694:836158..836429TCONS_00003714-exon-sc0000030-1575043694:836158..836429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:836158..836429 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.537278	0	0	2.97203	4.69707	0.708352	1.3263	0	0.575095	0	0	0	0.380541	0.938568	0	0	0	0	0.61288	0.532704	1.55901	1.89518	0	3.54928	0.697469	0	0	0.611528	1.12528
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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