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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003713 ID=TCONS_00003713|Name=TCONS_00003713|organism=Clytia hemisphaerica|type=transcript|length=866bp
GGACTAACTAAATAGAAGATCTATTCAAAAGTATCGTGTTTCATCCAAGT
CAACGCCGTATCAAAAGTAATTTGCTATACTTCTTTGCATACAAGAATTT
TTTTCCGTCAAGAAGGTCGAGGTACTAGAAAGGGTCGAAAAATCCCGAAG
AAAAGACTACTGCAGTCAAGGTAGCCGGAGCGTGAGGGCGAACAAGTACC
TCGAAGAAAAGACGCCTGTAGTCAAGGGTGCAGAAGATCAGTTGAAATAG
ACTGATTGGCTCGAATATATAGCCAGAAGAAAAATCCTCTGCAGCCAGGA
GGTAGACGTGTCTCGCCGAACGAGTGAAGAGTCTAGGTTACACCTTATTG
ACCTTTTAAAAGCCCCACACTGCCAACGAGATCATGGCAGATGGATGCGC
AAAAGATGAGTTAAGAATTTCCAACTctcctgaagaagaaaaattgaact
ttACACGAAATCGAGTACCAATGTTCACCTTCAACACGATCAAGAAGGGA
GAATCATTTCTTCATCTAAAACCATACAAACAGCAGATAAGGGGTACTCC
AACAAATGAGCTGAAGGTCGCTATTCCTGATTCGCAATCAGTACAAGAAA
AGGGGTTTCAATGTCGACATTGCACAAGAAGCTTTTCTTCCAAAACTGGT
CGAGCAAATCATGAGAATGCCCATGCACGAAAGAATCGAGAAGAATCTCC
TGCAACGCAAAATTCAACCGTGGAGGAAGTGACGTCACAACCTCATGCGA
ATCCCGTGCCACCCCCACAACCTCAAATAAACCATATATGGGGAAACCAC
GCCAAGGAAGACATCTATCAAATATTCCGAGCCATGTATAGTCAAATCGT
GCTTTGGAGATGAAAC Run BLAST on NCBI protein sequence of TCONS_00003713-protein >TCONS_00003713-protein ID=TCONS_00003713-protein|Name=TCONS_00003713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MADGCAKDELRISNSPEEEKLNFTRNRVPMFTFNTIKKGESFLHLKPYKQ
QIRGTPTNELKVAIPDSQSVQEKGFQCRHCTRSFSSKTGRANHENAHARK
NREESPATQNSTVEEVTSQPHANPVPPPQPQINHIWGNHAKEDIYQIFRA
MYSQIVLWR Run BLAST on NCBI transcript from alignment at sc0000030:763432..764297 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003713 ID=TCONS_00003713|Name=TCONS_00003713|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0000030:763432..764297 (Clytia hemisphaerica)
GTTTCATCTCCAAAGCACGATTTGACTATACATGGCTCGGAATATTTGAT
AGATGTCTTCCTTGGCGTGGTTTCCCCATATATGGTTTATTTGAGGTTGT
GGGGGTGGCACGGGATTCGCATGAGGTTGTGACGTCACTTCCTCCACGGT
TGAATTTTGCGTTGCAGGAGATTCTTCTCGATTCTTTCGTGCATGGGCAT
TCTCATGATTTGCTCGACCAGTTTTGGAAGAAAAGCTTCTTGTGCAATGT
CGACATTGAAACCCCTTTTCTTGTACTGATTGCGAATCAGGAATAGCGAC
CTTCAGCTCATTTGTTGGAGTACCCCTTATCTGCTGTTTGTATGGTTTTA
GATGAAGAAATGATTCTCCCTTCTTGATCGTGTTGAAGGTGAACATTGGT
ACTCGATTTCGTGTaaagttcaatttttcttcttcaggagAGTTGGAAAT
TCTTAACTCATCTTTTGCGCATCCATCTGCCATGATCTCGTTGGCAGTGT
GGGGCTTTTAAAAGGTCAATAAGGTGTAACCTAGACTCTTCACTCGTTCG
GCGAGACACGTCTACCTCCTGGCTGCAGAGGATTTTTCTTCTGGCTATAT
ATTCGAGCCAATCAGTCTATTTCAACTGATCTTCTGCACCCTTGACTACA
GGCGTCTTTTCTTCGAGGTACTTGTTCGCCCTCACGCTCCGGCTACCTTG
ACTGCAGTAGTCTTTTCTTCGGGATTTTTCGACCCTTTCTAGTACCTCGA
CCTTCTTGACGGAAAAAAATTCTTGTATGCAAAGAAGTATAGCAAATTAC
TTTTGATACGGCGTTGACTTGGATGAAACACGATACTTTTGAATAGATCT
TCTATTTAGTTAGTCC Coding sequence (CDS) from alignment at sc0000030:763432..764297 >TCONS_00003713 ID=TCONS_00003713|Name=TCONS_00003713|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000030:763432..764297 (Clytia hemisphaerica)
TCATCTCCAAAGCACGATTTGACTATACATGGCTCGGAATATTTGATAGA
TGTCTTCCTTGGCGTGGTTTCCCCATATATGGTTTATTTGAGGTTGTGGG
GGTGGCACGGGATTCGCATGAGGTTGTGACGTCACTTCCTCCACGGTTGA
ATTTTGCGTTGCAGGAGATTCTTCTCGATTCTTTCGTGCATGGGCATTCT
CATGATTTGCTCGACCAGTTTTGGAAGAAAAGCTTCTTGTGCAATGTCGA
CATTGAAACCCCTTTTCTTGTACTGATTGCGAATCAGGAATAGCGACCTT
CAGCTCATTTGTTGGAGTACCCCTTATCTGCTGTTTGTATGGTTTTAGAT
GAAGAAATGATTCTCCCTTCTTGATCGTGTTGAAGGTGAACATTGGTACT
CGATTTCGTGTaaagttcaatttttcttcttcaggagAGTTGGAAATTCT
TAACTCATCTTTTGCGCATCCATCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003713-exon-sc0000030-1491911889:763432..764297 | TCONS_00003713-exon-sc0000030-1491911889:763432..764297 | Clytia hemisphaerica | exon |
| TCONS_00003713-exon-sc0000030-1510915933:763432..764297 | TCONS_00003713-exon-sc0000030-1510915933:763432..764297 | Clytia hemisphaerica | exon |
| TCONS_00003713-exon-sc0000030-1575043694:763432..764297 | TCONS_00003713-exon-sc0000030-1575043694:763432..764297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:763432..764297 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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