TCONS_00003712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003712
Unique NameTCONS_00003712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003712 ID=TCONS_00003712|Name=TCONS_00003712|organism=Clytia hemisphaerica|type=transcript|length=370bp
NNAGCAGTACACGCCATGAGGGAGATCTTCGAAGAAGAAGAGACCGATGC
TCTTCTTCTTGTTGACGCCAGGAATGCATTCAATTCAATCAATCGAAAGG
TCCTTCTTTACAATATACCGTATCTTTGTCCCGTCTTGGTAACATATGTT
TCGAACTGTTACAAAGTTCCTTCGCGCTTATTTGTACAGGGAGGACTAGA
AATCTCATCAACTGAAGGAACCACGCAAGGCGACCCAATGTCAATGCCAT
CGTACGCCATTGGTTTATACCACTTAAGGATGCTATCAACAACAACGAGT
CGGTGCAGCAGGTAGCCTTTGCTGACGATTTGGGTGGTGCAGGTAAACTC
GATCGCGTCCGAGATTGGTG
Run BLAST on NCBI

protein sequence of TCONS_00003712-protein

>TCONS_00003712-protein ID=TCONS_00003712-protein|Name=TCONS_00003712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
XAVHAMREIFEEEETDALLLVDARNAFNSINRKVLLYNIPYLCPVLVTYV
SNCYKVPSRLFVQGGLEISSTEGTTQGDPMSMPSYAIGLYHLRMLSTTTS
RCSR
Run BLAST on NCBI

transcript from alignment at sc0000030:760453..760822

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003712 ID=TCONS_00003712|Name=TCONS_00003712|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0000030:760453..760822 (Clytia hemisphaerica)
CACCAATCTCGGACGCGATCGAGTTTACCTGCACCACCCAAATCGTCAGC
AAAGGCTACCTGCTGCACCGACTCGTTGTTGTTGATAGCATCCTTAAGTG
GTATAAACCAATGGCGTACGATGGCATTGACATTGGGTCGCCTTGCGTGG
TTCCTTCAGTTGATGAGATTTCTAGTCCTCCCTGTACAAATAAGCGCGAA
GGAACTTTGTAACAGTTCGAAACATATGTTACCAAGACGGGACAAAGATA
CGGTATATTGTAAAGAAGGACCTTTCGATTGATTGAATTGAATGCATTCC
TGGCGTCAACAAGAAGAAGAGCATCGGTCTCTTCTTCTTCGAAGATCTCC
CTCATGGCGTGTACTGCTNN

Coding sequence (CDS) from alignment at sc0000030:760453..760822

>TCONS_00003712 ID=TCONS_00003712|Name=TCONS_00003712|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000030:760453..760822 (Clytia hemisphaerica)
CTACCTGCTGCACCGACTCGTTGTTGTTGATAGCATCCTTAAGTGGTATA
AACCAATGGCGTACGATGGCATTGACATTGGGTCGCCTTGCGTGGTTCCT
TCAGTTGATGAGATTTCTAGTCCTCCCTGTACAAATAAGCGCGAAGGAAC
TTTGTAACAGTTCGAAACATATGTTACCAAGACGGGACAAAGATACGGTA
TATTGTAAAGAAGGACCTTTCGATTGATTGAATTGAATGCATTCCTGGCG
TCAACAAGAAGAAGAGCATCGGTCTCTTCTTCTTCGAAGATCTCCCTCAT
GGCGTGTACTGCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002072XLOC_002072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003712-exon-sc0000030-1491911889:760453..760822TCONS_00003712-exon-sc0000030-1491911889:760453..760822Clytia hemisphaericaexon
TCONS_00003712-exon-sc0000030-1510915933:760453..760822TCONS_00003712-exon-sc0000030-1510915933:760453..760822Clytia hemisphaericaexon
TCONS_00003712-exon-sc0000030-1575043694:760453..760822TCONS_00003712-exon-sc0000030-1575043694:760453..760822Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003712-proteinTCONS_00003712-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:760453..760822 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79972	1.85458	1.19878	0.579141	19.5463	13.1723	22.1298	20.9894	5.85658	7.14599	3.02974	6.4745	5.46425	4.59785	4.28899	7.28849	4.96005	5.66905	6.02229	4.65489	1.09446	1.7567	1.7564	1.26746	7.09008	9.83004	1.20218	2.42111	0.611384	0.641572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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