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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003711 ID=TCONS_00003711|Name=TCONS_00003711|organism=Clytia hemisphaerica|type=transcript|length=2903bp
gcgtgaaatcgaaaacaattggcgtgatcgtgaaaatcaaatttttcagg
cgtgatggcgtgaaatcgaaaaaaaattggcgtgatggcgtgaatttggg
gtccgctggggggcctctttaAGGTCTGGAGCATAGTCACTAGAATATTA
TGCATGGTCAGAAAGTCGGCTTGGTTCGGAGGCCGAGGtcggaaattttt
tatttggtcaCGTTATCAATTCGTATGAGCAGATTTCGGCGACGAGACGA
CAAGGCGAAGGTGCTACTTCAGGACTGaaatctttgattatttttattta
ttataatttattaCTGATCAccaacacacaaaaaacaacctAAAAAAAAA
TGGTGAGAGCGAGTGGGACTTGTTGTGTTTTTCCTGGTTGTCCTGTCTAT
TCTGGTTTACCTCAGTACAAGGGAGTTAGTTTGCTTAAATTACCTTCCAA
AGCAATAGATAGGGATTGGAAAAAGCAATTGGTtaaattattaattatta
aaTTATATTATTAAAAAGTCTCGTGTTATTGACAAGTGCCTTCAAAGTAG
AATAGATGAGTCGAAGGTCTGGGTTTGTTCCCTGCATTTCAGAGGATTAA
GGAAGCTCAAACTTTTTTGCCTTGCCTGCTGAAAATCTTCCAAAGTAATC
ATTTGAAAAGGAAGGCAACTTGTTCAAGATCTCCTGCCCTTGTCATCACC
CTTGCCAGACCCAAACCCTACtgctgtttttgaaaatgtataTGAAAGTT
TTGATGAGTTTGTGCCTCACTGTTCAAAATGGAAACTTCCAAACTGGAAA
GTGATGCTCTGCACTGTGGGGTCAGTCTTTTATAACTTAcagccttgaaa
atttgaaattattgttaGTACTTCTTTGGAATTTACGGTTCGACTTTATG
AATGGTAATTGCCTGATGATCACAATTTATACAAAAGACATAAAAGATCT
CTCAGAAAAGTCAGTTTGTATGATTTTTGTACAAGTATCTTAAAATTCAA
TGTTTGTGAGGGAATTTCTTCCTCTGTTATTGCACCAAAATCTGTTATTC
ATGCCATTCCATTAAAATATGACGAAGAAAATCAAAATCCTTTACAGATC
TTTGGCATGCGGGACTTTGATTGAAAGTGAAGAGATTTGCTCAGGATGTA
AGTGTTGTGTCAAAAAGAACGttttaaaacctaaaaaagaaatCACTCCT
GCGTCTAAATTTGCACCGCTATCAAGAACTAACCGTGCCAAAGTGATATT
AGCATTAGTAAAGGAAAGAGCCAGAGTCAAAGAACTAGCAGGGAAggttg
aaaaattacaaagtgaAAAGGAAACGAAAGTGATATCTGTGTCATCAGGG
ATGTCAAAAGACATCAATAGAATCATGCCAACCATCATCCTACCAATCCT
ATCCAAGGTTTTCGAAAGAGTTATCCTTGGTCATTAAGATAAAAAGTGCC
GGCCAAGACATCGAAAGAGTCCAGAACTTCAGAATTCTCGTCGTCAAATT
CAACGAGCATCTTGATTGAACTGAGCATGTTAATCAGACACTAAAGTGCT
GCTTcgtgtttcaaagttttgatataATTATTTTAATACTTCAAAGCAGT
TAATACTTCGGTGGTGCAGAGTCAAATGCAGGCGCgagactttcaaaaat
attttcaaaggcacgaaatGAATGCTCCTACTCCACGGGAATCTATGATT
ATGCAGGCACGGACCGCAAACATGATATTGGAGAAACACAGACTCGACCA
TCCTCCACACAATTACATGTTTGAGAGTCCTCCCTCTTACAGCCGAGACC
ATCGAGTGTCCTACAAACAAGCGACTCAAGTAACTCCCAACAAAGGTGAT
GATCGCCATGGATACTGAATGGAAGTTTCAGCGTTTTGTACTACCAGATG
GTAGCCATATGTCAATTAAGTGTCCCCACTGGCGGCGTggcaaatatttt
ttccgtagacgggcggaaatatctttaatggtcggaaatatcatagcgta
atggtcggaaatatcatttgatggtcggaaatatcatagcgtaatggtcg
gaaatatcatttgatggtcggaaatatcttttgatggtcggaaatatcca
aaactctgaaaatttgaaaatttaatggtcggaaatatttGATGTTCgaa
aatatcttttgatagtcggaaatatcatttgatggtcggaaatatcattt
gatggtcggaaatatccaaaactctaagaattttaaaatttaatggtcgg
aaatatcccgcgcttttaaaaatgcttcatcagcaaaaaaatgtaaccAT
ATGGTAGCAAAGCAAGGTGGTGTTGTGTGGCCAACTTTTGTACCAGACAA
GCTTTTTAGGGAGAGAAAGTGGTATTATTAACCTTTTTATTTAAACACGA
CTCTTCgttctttcttgtcttttttatatcctttcctcctctaGCCCCCA
CTGTAAGGGTCATTTTTTGGCAAGATTTTCTCTGCATGCACTGCCAGctg
gatgcactgtaagggttcgattttggaagccaaattttccgccgaacgta
tggtcgttttcagatcgatcCACCGGGGTAAGGTCTAGAATGGGAGGGTG
TCCAGGTAGGGTTGGGACTAGCTTTAGGGTGATTTGAGCAGTGAGGGCTA
GAGGAGGAAAGGATgtaaaaaagacaagaaagaaagaagagtcGTGTTTA
AATAAAAAGGTATACCACTTTCTCTCCCTAAAAAGCTGTCTACGTCTTGT
GTAAAATACTGTATAAAGAACTACGAAACAGAACAGTTCTCAGATAGtgt
cccaaaaacttaaaataaaaaactactcTTGTCTGGCACACACAGCAAGT
TGGGCACACCacaccacctttgctaccatctttgtttacatttttttgct
gaa Run BLAST on NCBI protein sequence of TCONS_00003711-protein >TCONS_00003711-protein ID=TCONS_00003711-protein|Name=TCONS_00003711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MTKKIKILYRSLACGTLIESEEICSGCKCCVKKNVLKPKKEITPASKFAP
LSRTNRAKVILALVKERARVKELAGKVEKLQSEKETKVISVSSGMSKDIN
RIMPTIILPILSKVFERVILGH Run BLAST on NCBI transcript from alignment at sc0000030:743577..746479 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003711 ID=TCONS_00003711|Name=TCONS_00003711|organism=Clytia hemisphaerica|type=transcript|length=2903bp|location=Sequence derived from alignment at sc0000030:743577..746479 (Clytia hemisphaerica)
ttcagcaaaaaaatgtaaacaaagatggtagcaaaggtggtgtGGTGTGC
CCAACTTGCTGTGTGTGCCAGACAAgagtagttttttattttaagttttt
gggacaCTATCTGAGAACTGTTCTGTTTCGTAGTTCTTTATACAGTATTT
TACACAAGACGTAGACAGCTTTTTAGGGAGAGAAAGTGGTATACCTTTTT
ATTTAAACACgactcttctttctttcttgtcttttttacATCCTTTCCTC
CTCTAGCCCTCACTGCTCAAATCACCCTAAAGCTAGTCCCAACCCTACCT
GGACACCCTCCCATTCTAGACCTTACCCCGGTGgatcgatctgaaaacga
ccatacgttcggcggaaaatttggcttccaaaatcgaacccttacagtgc
atccagCTGGCAGTGCATGCAGAGAAAATCTTGCCAAAAAATGACCCTTA
CAGTGGGGGCtagaggaggaaaggatataaaaaagacaagaaagaacGAA
GAGTCGTGTTTAAATAAAAAGGTTAATAATACCACTTTCTCTCCCTAAAA
AGCTTGTCTGGTACAAAAGTTGGCCACACAACACCACCTTGCTTTGCTAC
CATATggttacatttttttgctgatgaagcatttttaaaagcgcgggata
tttccgaccattaaattttaaaattcttagagttttggatatttccgacc
atcaaatgatatttccgaccatcaaatgatatttccgactatcaaaagat
attttcGAACATCaaatatttccgaccattaaattttcaaattttcagag
ttttggatatttccgaccatcaaaagatatttccgaccatcaaatgatat
ttccgaccattacgctatgatatttccgaccatcaaatgatatttccgac
cattacgctatgatatttccgaccattaaagatatttccgcccgtctacg
gaaaaaatatttgccACGCCGCCAGTGGGGACACTTAATTGACATATGGC
TACCATCTGGTAGTACAAAACGCTGAAACTTCCATTCAGTATCCATGGCG
ATCATCACCTTTGTTGGGAGTTACTTGAGTCGCTTGTTTGTAGGACACTC
GATGGTCTCGGCTGTAAGAGGGAGGACTCTCAAACATGTAATTGTGTGGA
GGATGGTCGAGTCTGTGTTTCTCCAATATCATGTTTGCGGTCCGTGCCTG
CATAATCATAGATTCCCGTGGAGTAGGAGCATTCatttcgtgcctttgaa
aatatttttgaaagtctcGCGCCTGCATTTGACTCTGCACCACCGAAGTA
TTAACTGCTTTGAAGTATTAAAATAATtatatcaaaactttgaaacacgA
AGCAGCACTTTAGTGTCTGATTAACATGCTCAGTTCAATCAAGATGCTCG
TTGAATTTGACGACGAGAATTCTGAAGTTCTGGACTCTTTCGATGTCTTG
GCCGGCACTTTTTATCTTAATGACCAAGGATAACTCTTTCGAAAACCTTG
GATAGGATTGGTAGGATGATGGTTGGCATGATTCTATTGATGTCTTTTGA
CATCCCTGATGACACAGATATCACTTTCGTTTCCTTTtcactttgtaatt
tttcaaccTTCCCTGCTAGTTCTTTGACTCTGGCTCTTTCCTTTACTAAT
GCTAATATCACTTTGGCACGGTTAGTTCTTGATAGCGGTGCAAATTTAGA
CGCAGGAGTGatttcttttttaggttttaaaaCGTTCTTTTTGACACAAC
ACTTACATCCTGAGCAAATCTCTTCACTTTCAATCAAAGTCCCGCATGCC
AAAGATCTGTAAAGGATTTTGATTTTCTTCGTCATATTTTAATGGAATGG
CATGAATAACAGATTTTGGTGCAATAACAGAGGAAGAAATTCCCTCACAA
ACATTGAATTTTAAGATACTTGTACAAAAATCATACAAACTGACTTTTCT
GAGAGATCTTTTATGTCTTTTGTATAAATTGTGATCATCAGGCAATTACC
ATTCATAAAGTCGAACCGTAAATTCCAAAGAAGTACtaacaataatttca
aattttcaaggctgTAAGTTATAAAAGACTGACCCCACAGTGCAGAGCAT
CACTTTCCAGTTTGGAAGTTTCCATTTTGAACAGTGAGGCACAAACTCAT
CAAAACTTTCAtatacattttcaaaaacagcaGTAGGGTTTGGGTCTGGC
AAGGGTGATGACAAGGGCAGGAGATCTTGAACAAGTTGCCTTCCTTTTCA
AATGATTACTTTGGAAGATTTTCAGCAGGCAAGGCAAAAAAGTTTGAGCT
TCCTTAATCCTCTGAAATGCAGGGAACAAACCCAGACCTTCGACTCATCT
ATTCTACTTTGAAGGCACTTGTCAATAACACGAGACTTTTTAATAATATA
AtttaataattaataatttaACCAATTGCTTTTTCCAATCCCTATCTATT
GCTTTGGAAGGTAATTTAAGCAAACTAACTCCCTTGTACTGAGGTAAACC
AGAATAGACAGGACAACCAGGAAAAACACAACAAGTCCCACTCGCTCTCA
CCATTTTTTTTTaggttgttttttgtgtgttggTGATCAGtaataaatta
taataaataaaaataatcaaagatttCAGTCCTGAAGTAGCACCTTCGCC
TTGTCGTCTCGTCGCCGAAATCTGCTCATACGAATTGATAACGtgaccaa
ataaaaaatttccgaCCTCGGCCTCCGAACCAAGCCGACTTTCTGACCAT
GCATAATATTCTAGTGACTATGCTCCAGACCTtaaagaggccccccagcg
gaccccaaattcacgccatcacgccaattttttttcgatttcacgccatc
acgcctgaaaaatttgattttcacgatcacgccaattgttttcgatttca
cgc Coding sequence (CDS) from alignment at sc0000030:743577..746479 >TCONS_00003711 ID=TCONS_00003711|Name=TCONS_00003711|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0000030:743577..746479 (Clytia hemisphaerica)
TTAATGACCAAGGATAACTCTTTCGAAAACCTTGGATAGGATTGGTAGGA
TGATGGTTGGCATGATTCTATTGATGTCTTTTGACATCCCTGATGACACA
GATATCACTTTCGTTTCCTTTtcactttgtaatttttcaaccTTCCCTGC
TAGTTCTTTGACTCTGGCTCTTTCCTTTACTAATGCTAATATCACTTTGG
CACGGTTAGTTCTTGATAGCGGTGCAAATTTAGACGCAGGAGTGatttct
tttttaggttttaaaaCGTTCTTTTTGACACAACACTTACATCCTGAGCA
AATCTCTTCACTTTCAATCAAAGTCCCGCATGCCAAAGATCTGTAAAGGA
TTTTGATTTTCTTCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003711-exon-sc0000030-1491911889:743577..746479 | TCONS_00003711-exon-sc0000030-1491911889:743577..746479 | Clytia hemisphaerica | exon |
| TCONS_00003711-exon-sc0000030-1510915933:743577..746479 | TCONS_00003711-exon-sc0000030-1510915933:743577..746479 | Clytia hemisphaerica | exon |
| TCONS_00003711-exon-sc0000030-1575043694:743577..746479 | TCONS_00003711-exon-sc0000030-1575043694:743577..746479 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:743577..746479 . |
Blast
The following BLAST results are available for this feature:
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