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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003706 ID=TCONS_00003706|Name=TCONS_00003706|organism=Clytia hemisphaerica|type=transcript|length=2535bp
ataaTGTTCAATCCATCGATAAACATTGATAAGATTGGAAAATTGTTGAA
GAATACTGAGAAAGTTTGTGGTGGTACTAACAATTTTAGACGGGTAGAGA
TACCAAATTCATGGTCTCAATACAGTACTGTACCTGTCATATTAGAAACT
GCACGTAGAAATGGGTTGAATGTTTTCTGTGTAAGTGAAACACCTGGTGA
CggtaattgtttttattgggcAATAATTGAGCAGCTTCGTGATCGTCCAA
ATCTTAGTGGGGATATTTCAGCTTTGCGGTTACGATATCCTAATCATCAT
ATATTCAGAAGGGCTGTTGTTGAATTTGTAAGGTCTGAAAGCCTTTTAAC
AGAGGAAGAGTCACTATACATATTTCGGTACAAGACTTTTTTCGAAAGTG
GAGCTGTAAGACTTGATAGAGCAAGAGGTTTCAGCTGGAATCAATTGTTA
AATCAACAACTATGTGATACTGTTTACACTACAGAGATTTTCGTCAAAGC
TACTGCTGTTTTACttggaaaagatatttgtgTTAGTTCTGAGCGATGCC
GTCATGGGGATCCCTTAAACAGAGTAACGTGTTCATGGGATAGTGAGGCC
CAGTTTGATGCACATGAACCAGTAGGCAATTTATTTTGATAGCAAATGTC
AATGGAAACCATTTTCAATCACTACTACCTGGTACTGCGGGACTCTTAAG
TAATGTACACAACCACGGTTATGTTTTATTGCCTGAGATTGAAACAGACA
TTGATTTTTCCATATCatcaaatatctcaaaaagGAATTAACTCAAATtg
cttttgaaaatgatgatttaGAGAGTGATCAAGCAAAACGTATTAAATCA
TCTTTTATCTCTGATAAATTAAaccctattcatgatatgcaccactggag
agtcttctgagaacttttaaaattttccacccaatacgtcacttaaacaa
tagaaaaagtgacgtattgggtggaacaaaacaaaaaagttgcataattt
cgtgaagtcattgcagtggtgcatatcatgaatacacctttcccaagttt
atcgatttttttcgaCCTCTCCAGTTTGAAACGAGAACTTGatacttttg
aagcttttggtGATAAAAAGtcattctgaaaatttgagatcaaaagcTTT
TTCCGTTCCTTTTTTATGGCTGTTTTAATTCCTCTGTTTTTACAGTCAAA
CCTCtcttaaaagatattttatctTACCGGGCCTCGTTTCTATGTCGTTT
CCATGGGATacttttgtttaagaaaaaactttaaaactgaaatatctcaa
gaaccGGAAGAGCTTTTaacataattctttttttgttgattttgtatttC
CTAGTAGAAACTTTCTAAATTAAATGCAAGTAGAGCAGGGCTTTGgaatg
gtgtttttcaaaaagtcgaaataatttcgggaaaggtgtattgaattCGA
TCTGAGGGAAAGATATTTGAATGCCGGGATAGAATATACTGGTGCTGGTG
AGCATGAATCTGTGTCTGAAATGGAAAAACGGAGACAGAAGTTGAGCAAA
TCAATTACTAGCAAAGAGAAAAGTGTGtctgcagaaaaaaaaaactttta
agaacTTGTGTGTTGAAAAAGGTGTAAACTACATCACGCCGCCCCTTATT
GAATCTGAAAGGGAAAGGCAAAATAGGAGAAAAAGAATgcgttttctttt
gaaacatGCAAGCAAGGAAAATAGTGCCAATGTCAATACTAAAAaggcaa
aatctaaaaatgtagaaaattttAATACTAAAAaggcaaaatctaaaaat
ttagaaaatgtagAAAATGGCACATCTCAACCTCTACCACAAGCTAACAA
TATATCAGATGCTAATACATCAGTTTCAAATGAGAATTCTACAACAAGCC
TACATTCTAATCCACGTGTTATTGAAGCAgcaaacatttttgaagaagGT
GAATTGAAACACGAgattaaaaaatgcaaaatttgtaaTGAAGTGAGGAC
TGTTTTCCACCAAGCTCCTCAAGTACAGcctattttgaataaaaatgatt
tGTTTCCACCTTTTTCATGGTCAGTAAGGGAAGACGGTAAGTGCAACAGG
TGCTATCAAGAGGAAAAAAGTAACAGCAAGAGGAAAAACCCTAGTGCCGC
TCCTAAGTTTTCAGGTATTTTCACAAATAATGACATTGAAGGTAATAGAG
TCCCTCATAACAATATGCACTTTGAAAATATACCCCCTTATTTACAAAAG
TTGACTCTTCTTGAAACTGCTATGATTTCAAAGATTAATACCATAACGAA
TATAACCATACTAAAATATGGAATGCTAAGAGGCAAAGGGCATAGCATAG
CTGTCCCAAATGACATGAAGATAGCAAAAACTCTACCAAATCTCCCTCAA
GAAGTAGGCATTATATTGCTAAGAAAGAAAGGTGCGAATGGTGAAGTCTT
AAAAGAATACACCGTTAGGCGCGATTTTGTTGAAAAGGCATTGACAGGCC
TTGTCTTTGGTTGGCCTAATGGGGGTATAGAAAAT Run BLAST on NCBI protein sequence of TCONS_00003706-protein >TCONS_00003706-protein ID=TCONS_00003706-protein|Name=TCONS_00003706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MRFLLKHASKENSANVNTKKAKSKNVENFNTKKAKSKNLENVENGTSQPL
PQANNISDANTSVSNENSTTSLHSNPRVIEAANIFEEGELKHEIKKCKIC
NEVRTVFHQAPQVQPILNKNDLFPPFSWSVREDGKCNRCYQEEKSNSKRK
NPSAAPKFSGIFTNNDIEGNRVPHNNMHFENIPPYLQKLTLLETAMISKI
NTITNITILKYGMLRGKGHSIAVPNDMKIAKTLPNLPQEVGIILLRKKGA
NGEVLKEYTVRRDFVEKALTGLVFGWPNGGIEN Run BLAST on NCBI transcript from alignment at sc0000030:733192..735726 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003706 ID=TCONS_00003706|Name=TCONS_00003706|organism=Clytia hemisphaerica|type=transcript|length=2535bp|location=Sequence derived from alignment at sc0000030:733192..735726 (Clytia hemisphaerica)
ATTTTCTATACCCCCATTAGGCCAACCAAAGACAAGGCCTGTCAATGCCT
TTTCAACAAAATCGCGCCTAACGGTGTATTCTTTTAAGACTTCACCATTC
GCACCTTTCTTTCTTAGCAATATAATGCCTACTTCTTGAGGGAGATTTGG
TAGAGTTTTTGCTATCTTCATGTCATTTGGGACAGCTATGCTATGCCCTT
TGCCTCTTAGCATTCCATATTTTAGTATGGTTATATTCGTTATGGTATTA
ATCTTTGAAATCATAGCAGTTTCAAGAAGAGTCAACTTTTGTAAATAAGG
GGGTATATTTTCAAAGTGCATATTGTTATGAGGGACTCTATTACCTTCAA
TGTCATTATTTGTGAAAATACCTGAAAACTTAGGAGCGGCACTAGGGTTT
TTCCTCTTGCTGTTACTTTTTTCCTCTTGATAGCACCTGTTGCACTTACC
GTCTTCCCTTACTGACCATGAAAAAGGTGGAAACaaatcatttttattca
aaataggCTGTACTTGAGGAGCTTGGTGGAAAACAGTCCTCACTTCAtta
caaattttgcattttttaatcTCGTGTTTCAATTCACcttcttcaaaaat
gtttgcTGCTTCAATAACACGTGGATTAGAATGTAGGCTTGTTGTAGAAT
TCTCATTTGAAACTGATGTATTAGCATCTGATATATTGTTAGCTTGTGGT
AGAGGTTGAGATGTGCCATTTTctacattttctaaatttttagattttgc
ctTTTTAGTATTaaaattttctacatttttagattttgcctTTTTAGTAT
TGACATTGGCACTATTTTCCTTGCTTGCatgtttcaaaagaaaacgcATT
CTTTTTCTCCTATTTTGCCTTTCCCTTTCAGATTCAATAAGGGGCGGCGT
GATGTAGTTTACACCTTTTTCAACACACAAgttcttaaaagttttttttt
tctgcagaCACACTTTTCTCTTTGCTAGTAATTGATTTGCTCAACTTCTG
TCTCCGTTTTTCCATTTCAGACACAGATTCATGCTCACCAGCACCAGTAT
ATTCTATCCCGGCATTCAAATATCTTTCCCTCAGATCGaattcaatacac
ctttcccgaaattatttcgactttttgaaaaacaccattcCAAAGCCCTG
CTCTACTTGCATTTAATTTAGAAAGTTTCTACTAGGaaatacaaaatcaa
caaaaaaagaattatgttAAAAGCTCTTCCggttcttgagatatttcagt
tttaaagttttttcttaaacaaaagtATCCCATGGAAACGACATAGAAAC
GAGGCCCGGTAagataaaatatcttttaagaGAGGTTTGACTGTAAAAAC
AGAGGAATTAAAACAGCCATAAAAAAGGAACGGAAAAAgcttttgatctc
aaattttcagaatgaCTTTTTATCaccaaaagcttcaaaagtatCAAGTT
CTCGTTTCAAACTGGAGAGGtcgaaaaaaatcgataaacttgggaaaggt
gtattcatgatatgcaccactgcaatgacttcacgaaattatgcaacttt
tttgttttgttccacccaatacgtcactttttctattgtttaagtgacgt
attgggtggaaaattttaaaagttctcagaagactctccagtggtgcata
tcatgaatagggtTTAATTTATCAGAGATAAAAGATGATTTAATACGTTT
TGCTTGATCACTCTCtaaatcatcattttcaaaagcaATTTGAGTTAATT
CctttttgagatatttgatGATATGGAAAAATCAATGTCTGTTTCAATCT
CAGGCAATAAAACATAACCGTGGTTGTGTACATTACTTAAGAGTCCCGCA
GTACCAGGTAGTAGTGATTGAAAATGGTTTCCATTGACATTTGCTATCAA
AATAAATTGCCTACTGGTTCATGTGCATCAAACTGGGCCTCACTATCCCA
TGAACACGTTACTCTGTTTAAGGGATCCCCATGACGGCATCGCTCAGAAC
TAAcacaaatatcttttccaaGTAAAACAGCAGTAGCTTTGACGAAAATC
TCTGTAGTGTAAACAGTATCACATAGTTGTTGATTTAACAATTGATTCCA
GCTGAAACCTCTTGCTCTATCAAGTCTTACAGCTCCACTTTCGAAAAAAG
TCTTGTACCGAAATATGTATAGTGACTCTTCCTCTGTTAAAAGGCTTTCA
GACCTTACAAATTCAACAACAGCCCTTCTGAATATATGATGATTAGGATA
TCGTAACCGCAAAGCTGAAATATCCCCACTAAGATTTGGACGATCACGAA
GCTGCTCAATTATTgcccaataaaaacaattaccGTCACCAGGTGTTTCA
CTTACACAGAAAACATTCAACCCATTTCTACGTGCAGTTTCTAATATGAC
AGGTACAGTACTGTATTGAGACCATGAATTTGGTATCTCTACCCGTCTAA
AATTGTTAGTACCACCACAAACTTTCTCAGTATTCTTCAACAATTTTCCA
ATCTTATCAATGTTTATCGATGGATTGAACAttat Coding sequence (CDS) from alignment at sc0000030:733192..735726 >TCONS_00003706 ID=TCONS_00003706|Name=TCONS_00003706|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0000030:733192..735726 (Clytia hemisphaerica)
ATTTTCTATACCCCCATTAGGCCAACCAAAGACAAGGCCTGTCAATGCCT
TTTCAACAAAATCGCGCCTAACGGTGTATTCTTTTAAGACTTCACCATTC
GCACCTTTCTTTCTTAGCAATATAATGCCTACTTCTTGAGGGAGATTTGG
TAGAGTTTTTGCTATCTTCATGTCATTTGGGACAGCTATGCTATGCCCTT
TGCCTCTTAGCATTCCATATTTTAGTATGGTTATATTCGTTATGGTATTA
ATCTTTGAAATCATAGCAGTTTCAAGAAGAGTCAACTTTTGTAAATAAGG
GGGTATATTTTCAAAGTGCATATTGTTATGAGGGACTCTATTACCTTCAA
TGTCATTATTTGTGAAAATACCTGAAAACTTAGGAGCGGCACTAGGGTTT
TTCCTCTTGCTGTTACTTTTTTCCTCTTGATAGCACCTGTTGCACTTACC
GTCTTCCCTTACTGACCATGAAAAAGGTGGAAACaaatcatttttattca
aaataggCTGTACTTGAGGAGCTTGGTGGAAAACAGTCCTCACTTCAtta
caaattttgcattttttaatcTCGTGTTTCAATTCACcttcttcaaaaat
gtttgcTGCTTCAATAACACGTGGATTAGAATGTAGGCTTGTTGTAGAAT
TCTCATTTGAAACTGATGTATTAGCATCTGATATATTGTTAGCTTGTGGT
AGAGGTTGAGATGTGCCATTTTctacattttctaaatttttagattttgc
ctTTTTAGTATTaaaattttctacatttttagattttgcctTTTTAGTAT
TGACATTGGCACTATTTTCCTTGCTTGCatgtttcaaaagaaaacgcAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003706-exon-sc0000030-1491911889:733192..735726 | TCONS_00003706-exon-sc0000030-1491911889:733192..735726 | Clytia hemisphaerica | exon |
| TCONS_00003706-exon-sc0000030-1510915933:733192..735726 | TCONS_00003706-exon-sc0000030-1510915933:733192..735726 | Clytia hemisphaerica | exon |
| TCONS_00003706-exon-sc0000030-1575043694:733192..735726 | TCONS_00003706-exon-sc0000030-1575043694:733192..735726 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:733192..735726 . |
Blast
The following BLAST results are available for this feature:
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