TCONS_00003704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003704
Unique NameTCONS_00003704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003704 ID=TCONS_00003704|Name=TCONS_00003704|organism=Clytia hemisphaerica|type=transcript|length=808bp
ATATGAGGAGAGAAATGTGAAGGAAAGAGGAGAGCTACAAGAAGCTCATG
GTAAGATTACTATGCTGATAAgctacagaaaaaaaaatttttttaagagg
CTAAGGAGCAAATTAGCAAGTTGGAGAAAGCCTTGNTAAAAGCTaccaaa
ggaaagaaaaaaccttaaaaaggcTAAGGAGCAAATTAGCAAGTTGGAGA
AGGCCTTAGAGAGTTTCTATTTCCATGCACTCACTCGCAAAAAGCTTACA
AAGAGTACCAACGCCAGtagaaaaatttaattcatCTGCAAATAACTCAA
TCTAATCGTTTTTATTCAGTcgtttttatacatttttcttCGATATCGTT
ATTCGCTGCTGTTGCTGCACACTCGTCAACTGTTTATTATTCGACAATCG
TCTGTCAACGTGAGGACATTTCTCTCTACTGTTATTTGAGTACAACTagt
ggtaaaatttgttttgatttgatcgacATTCGTTTTTATACAACTCTTTT
GATATATTTCTGTTTGATTTAAACATTGTTACGTAAAATCGTTGCTACCG
CTGCTTTTCGTTTATCGCATCTCCTACCAACTGGTCATTATCCGACAATC
GCCTGTGAACGTGTGTCAAGAGCATTTTCTCTACTAGtactattatttat
ttatttatttatttgtttaattATTTATTCACCGCCCTTTTGTTCAGATG
GTTGGCAGAGGTGGTAGAGATGAAAGTTCGTTGTTTGAAAGTATTTCAAT
GCTCCATAAAAGTTTGGCAGCGCATTCATCTTCTGATACAGTTGAGtaga
ggcccgga
Run BLAST on NCBI

transcript from alignment at sc0000030:727996..728803

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003704 ID=TCONS_00003704|Name=TCONS_00003704|organism=Clytia hemisphaerica|type=transcript|length=808bp|location=Sequence derived from alignment at sc0000030:727996..728803 (Clytia hemisphaerica)
tccgggcctctaCTCAACTGTATCAGAAGATGAATGCGCTGCCAAACTTT
TATGGAGCATTGAAATACTTTCAAACAACGAACTTTCATCTCTACCACCT
CTGCCAACCATCTGAACAAAAGGGCGGTGAATAAATaattaaacaaataa
ataaataaataaataatagtaCTAGTAGAGAAAATGCTCTTGACACACGT
TCACAGGCGATTGTCGGATAATGACCAGTTGGTAGGAGATGCGATAAACG
AAAAGCAGCGGTAGCAACGATTTTACGTAACAATGTTTAAATCAAACAGA
AATATATCAAAAGAGTTGTATAAAAACGAATgtcgatcaaatcaaaacaa
attttaccactAGTTGTACTCAAATAACAGTAGAGAGAAATGTCCTCACG
TTGACAGACGATTGTCGAATAATAAACAGTTGACGAGTGTGCAGCAACAG
CAGCGAATAACGATATCGaagaaaaatgtataaaaacgACTGAATAAAAA
CGATTAGATTGAGTTATTTGCAGatgaattaaatttttctaCTGGCGTTG
GTACTCTTTGTAAGCTTTTTGCGAGTGAGTGCATGGAAATAGAAACTCTC
TAAGGCCTTCTCCAACTTGCTAATTTGCTCCTTAgcctttttaaggtttt
ttctttcctttggtAGCTTTTANCAAGGCTTTCTCCAACTTGCTAATTTG
CTCCTTAGcctcttaaaaaaatttttttttctgtagcTTATCAGCATAGT
AATCTTACCATGAGCTTCTTGTAGCTCTCCTCTTTCCTTCACATTTCTCT
CCTCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002064XLOC_002064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003704-exon-sc0000030-1491911889:727996..728803TCONS_00003704-exon-sc0000030-1491911889:727996..728803Clytia hemisphaericaexon
TCONS_00003704-exon-sc0000030-1510915933:727996..728803TCONS_00003704-exon-sc0000030-1510915933:727996..728803Clytia hemisphaericaexon
TCONS_00003704-exon-sc0000030-1575043694:727996..728803TCONS_00003704-exon-sc0000030-1575043694:727996..728803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:727996..728803 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.638981	0.0631164	0.380737	0.641594	0.149732	0.432756	0.0600062	0.197229	0.0787817	0.0409078	0.0672636	0.0721841	0.266775	0.0455726	0	0	0.0572653	0.083796	0	0	0.953862	0.908052	0	0.0866735	0.0657388	0.26791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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