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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003703 ID=TCONS_00003703|Name=TCONS_00003703|organism=Clytia hemisphaerica|type=transcript|length=1221bp
CTCTTTTAagttataaaattaaaaaaaaatgagtgcTAATAAACGTGCGC
CTTATTCACCAAGACCAAATAGGTCTTCCAAAAAATCCAAACTGTCTTCC
ATTTGTGAAACAAACGCTACCCCATCTACTACTACCCCCACAACTTCCAC
CGCCACTGTTACCTCATCTACGACTGCCCCCACCGCCACTGTGCCTTGGT
ACTATACCTCTCCAAATCAGGTGGAAGTCGTGGTGAACACACGTTCCGGT
CATCCATGCAGATATACGGTGCTATCTCCAAAAAATTAACCGAAgtacaa
gaaaaaaagattaaaaaagatATAGCACATCTATTGGTTGACCAAGGTAA
ATACTTTTGCCCGTTAAAGTACCTCAATTACGACTGCCCTCACCGCTGCC
ACCGCCACTGTTACCTCAACTACGACTGCCCTCACCGCCACTGTGCCTTG
GTACTATACCTCTCCAAATCAGGTGGAAGTCGTGGTGAACACACGTTCCG
GTCATCCATGCAGATATACGGTACTATCTCCAAAAAATTAACCGAAgtac
aagaaaaaaagattaaaaaagatATAGCACATCTATTGGTTGACCAAGGT
AAATACTTTTGCCCGTTAAAGTACCTCAACTACGACTGCCCTCACCGCTT
CCACCGCCACTGTTACCTCAACTACGACTGCCCTCACCGCTGCCACCGCC
ACTGTTACCTCAACTACGACTGCCCTCACCGCTGCCACCGCCACTACATC
CACCACCACTGCCACGGAGGACATGAATTTGCATTACTCGATGAATTACA
TGATGAACATGTGCATTCATGGCAATCAGTCTTAATATTAATGGTTTTCG
TATCATTATCGATGCTACTTGTATACCCAGTAGTCAATCACCCTCGATCC
ATAACTATACTACCTGCACTGCGAACATTGGTTGACCagacaaaaattga
aatcaaaatcacaaaagagaATAACAAGGAAAAcaacaaattgaaaattc
atCGAAAAACGAATATAACTCAGTATATAAAGAGTTGGACAGGTGATTGC
CCTTTTCCAAACTATGCATCTAAATTAGTGAATGAGTCATGGTTCCCAAT
CTTCTTGGACACTTTACGAAAAGTGGATTTAAAgccaacaaaaaataaaa
gaacgaCTCTACACTGTACAAGGTATGTGAACTTGACTCCATAAAATTGT
ACGCATGTAACCCTAGCTACG Run BLAST on NCBI protein sequence of TCONS_00003703-protein >TCONS_00003703-protein ID=TCONS_00003703-protein|Name=TCONS_00003703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MQIYGAISKKLTEVQEKKIKKDIAHLLVDQGKYFCPLKYLNYDCPHRCHR
HCYLNYDCPHRHCALVLYLSKSGGSRGEHTFRSSMQIYGTISKKLTEVQE
KKIKKDIAHLLVDQGKYFCPLKYLNYDCPHRFHRHCYLNYDCPHRCHRHC
YLNYDCPHRCHRHYIHHHCHGGHEFALLDELHDEHVHSWQSVLILMVFVS
LSMLLVYPVVNHPRSITILPALRTLVDQTKIEIKITKENNKENNKLKIHR
KTNITQYIKSWTGDCPFPNYASKLVNESWFPIFLDTLRKVDLKPTKNKRT
TLHCTRYVNLTP Run BLAST on NCBI transcript from alignment at sc0000030:726566..727786 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003703 ID=TCONS_00003703|Name=TCONS_00003703|organism=Clytia hemisphaerica|type=transcript|length=1221bp|location=Sequence derived from alignment at sc0000030:726566..727786 (Clytia hemisphaerica)
CGTAGCTAGGGTTACATGCGTACAATTTTATGGAGTCAAGTTCACATACC
TTGTACAGTGTAGAGtcgttcttttattttttgttggcTTTAAATCCACT
TTTCGTAAAGTGTCCAAGAAGATTGGGAACCATGACTCATTCACTAATTT
AGATGCATAGTTTGGAAAAGGGCAATCACCTGTCCAACTCTTTATATACT
GAGTTATATTCGTTTTTCGatgaattttcaatttgttgTTTTCCTTGTTA
TtctcttttgtgattttgatttcaatttttgtctGGTCAACCAATGTTCG
CAGTGCAGGTAGTATAGTTATGGATCGAGGGTGATTGACTACTGGGTATA
CAAGTAGCATCGATAATGATACGAAAACCATTAATATTAAGACTGATTGC
CATGAATGCACATGTTCATCATGTAATTCATCGAGTAATGCAAATTCATG
TCCTCCGTGGCAGTGGTGGTGGATGTAGTGGCGGTGGCAGCGGTGAGGGC
AGTCGTAGTTGAGGTAACAGTGGCGGTGGCAGCGGTGAGGGCAGTCGTAG
TTGAGGTAACAGTGGCGGTGGAAGCGGTGAGGGCAGTCGTAGTTGAGGTA
CTTTAACGGGCAAAAGTATTTACCTTGGTCAACCAATAGATGTGCTATat
cttttttaatctttttttcttgtacTTCGGTTAATTTTTTGGAGATAGTA
CCGTATATCTGCATGGATGACCGGAACGTGTGTTCACCACGACTTCCACC
TGATTTGGAGAGGTATAGTACCAAGGCACAGTGGCGGTGAGGGCAGTCGT
AGTTGAGGTAACAGTGGCGGTGGCAGCGGTGAGGGCAGTCGTAATTGAGG
TACTTTAACGGGCAAAAGTATTTACCTTGGTCAACCAATAGATGTGCTAT
atcttttttaatctttttttcttgtacTTCGGTTAATTTTTTGGAGATAG
CACCGTATATCTGCATGGATGACCGGAACGTGTGTTCACCACGACTTCCA
CCTGATTTGGAGAGGTATAGTACCAAGGCACAGTGGCGGTGGGGGCAGTC
GTAGATGAGGTAACAGTGGCGGTGGAAGTTGTGGGGGTAGTAGTAGATGG
GGTAGCGTTTGTTTCACAAATGGAAGACAGTTTGGATTTTTTGGAAGACC
TATTTGGTCTTGGTGAATAAGGCGCACGTTTATTAgcactcatttttttt
taattttataactTAAAAGAG Coding sequence (CDS) from alignment at sc0000030:726566..727786 >TCONS_00003703 ID=TCONS_00003703|Name=TCONS_00003703|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at sc0000030:726566..727786 (Clytia hemisphaerica)
TTATGGAGTCAAGTTCACATACCTTGTACAGTGTAGAGtcgttcttttat
tttttgttggcTTTAAATCCACTTTTCGTAAAGTGTCCAAGAAGATTGGG
AACCATGACTCATTCACTAATTTAGATGCATAGTTTGGAAAAGGGCAATC
ACCTGTCCAACTCTTTATATACTGAGTTATATTCGTTTTTCGatgaattt
tcaatttgttgTTTTCCTTGTTATtctcttttgtgattttgatttcaatt
tttgtctGGTCAACCAATGTTCGCAGTGCAGGTAGTATAGTTATGGATCG
AGGGTGATTGACTACTGGGTATACAAGTAGCATCGATAATGATACGAAAA
CCATTAATATTAAGACTGATTGCCATGAATGCACATGTTCATCATGTAAT
TCATCGAGTAATGCAAATTCATGTCCTCCGTGGCAGTGGTGGTGGATGTA
GTGGCGGTGGCAGCGGTGAGGGCAGTCGTAGTTGAGGTAACAGTGGCGGT
GGCAGCGGTGAGGGCAGTCGTAGTTGAGGTAACAGTGGCGGTGGAAGCGG
TGAGGGCAGTCGTAGTTGAGGTACTTTAACGGGCAAAAGTATTTACCTTG
GTCAACCAATAGATGTGCTATatcttttttaatctttttttcttgtacTT
CGGTTAATTTTTTGGAGATAGTACCGTATATCTGCATGGATGACCGGAAC
GTGTGTTCACCACGACTTCCACCTGATTTGGAGAGGTATAGTACCAAGGC
ACAGTGGCGGTGAGGGCAGTCGTAGTTGAGGTAACAGTGGCGGTGGCAGC
GGTGAGGGCAGTCGTAATTGAGGTACTTTAACGGGCAAAAGTATTTACCT
TGGTCAACCAATAGATGTGCTATatcttttttaatctttttttcttgtac
TTCGGTTAATTTTTTGGAGATAGCACCGTATATCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003703-exon-sc0000030-1491911889:726566..727786 | TCONS_00003703-exon-sc0000030-1491911889:726566..727786 | Clytia hemisphaerica | exon |
| TCONS_00003703-exon-sc0000030-1510915933:726566..727786 | TCONS_00003703-exon-sc0000030-1510915933:726566..727786 | Clytia hemisphaerica | exon |
| TCONS_00003703-exon-sc0000030-1575043694:726566..727786 | TCONS_00003703-exon-sc0000030-1575043694:726566..727786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:726566..727786 . |
Blast
The following BLAST results are available for this feature:
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