TCONS_00003700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003700
Unique NameTCONS_00003700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003700 ID=TCONS_00003700|Name=TCONS_00003700|organism=Clytia hemisphaerica|type=transcript|length=733bp
CACCCAGTTATCTTCAAAACAGCCGCAGAAGATTTAAAAAGAATACAACA
ATGCACTTAGGACGAATGGCGTCATCACACTAAAACAACAAAAGCCTCAT
GCAAAACCAATTAAGAACCCATACCACGTCTACTCAAAGCACACCAACAA
CACATAGGAATACTCCGGACCCTGCTTCTCCATTTAGATTCCAACAACCT
TTAGGCAATTTCAATCAACCTCTCACAATATTCATTCAACACAGAATAAA
AATTGGATGGCACTCTCTTTGTTGCACAAGAAGCACCAATAACCTGGACA
ACACTGTTTGTTTGTCTTAAGAAGAAGTCCTTAGTGAATAAGTTTATTGC
CTTCTCATGAggatttgttaaccgtttcacCAAGCTCCACCGAAGAGTTT
TCTGGACCCGACAACCTCAACAGTTCTACAAATAATCTTTTGATGGATAC
TCTTGTACCAAAAAGGAGGACAAAGAAGATGACAATACGAAAGAAGATGA
CAATACGAAAGAAGATCAGCCCGATTCAGAAACAGCCGAAACGTTGAGAG
AACCCAAGACAGCGTCTCCGACATCCAATAAAGATACCCTCAATGGCGAG
TCTGCAAAAAGTTACACTTTAACTTTCTAGTAACAATTTACTCATCGTAG
TTAAagaaatagtcgaacgtgcacaacgcactgggctcaacttcagtgtc
ttcaaattattcataggcccagttgtagacccc
Run BLAST on NCBI

transcript from alignment at sc0000030:704681..705413

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003700 ID=TCONS_00003700|Name=TCONS_00003700|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at sc0000030:704681..705413 (Clytia hemisphaerica)
ggggtctacaactgggcctatgaataatttgaagacactgaagttgagcc
cagtgcgttgtgcacgttcgactatttctTTAACTACGATGAGTAAATTG
TTACTAGAAAGTTAAAGTGTAACTTTTTGCAGACTCGCCATTGAGGGTAT
CTTTATTGGATGTCGGAGACGCTGTCTTGGGTTCTCTCAACGTTTCGGCT
GTTTCTGAATCGGGCTGATCTTCTTTCGTATTGTCATCTTCTTTCGTATT
GTCATCTTCTTTGTCCTCCTTTTTGGTACAAGAGTATCCATCAAAAGATT
ATTTGTAGAACTGTTGAGGTTGTCGGGTCCAGAAAACTCTTCGGTGGAGC
TTGgtgaaacggttaacaaatccTCATGAGAAGGCAATAAACTTATTCAC
TAAGGACTTCTTCTTAAGACAAACAAACAGTGTTGTCCAGGTTATTGGTG
CTTCTTGTGCAACAAAGAGAGTGCCATCCAATTTTTATTCTGTGTTGAAT
GAATATTGTGAGAGGTTGATTGAAATTGCCTAAAGGTTGTTGGAATCTAA
ATGGAGAAGCAGGGTCCGGAGTATTCCTATGTGTTGTTGGTGTGCTTTGA
GTAGACGTGGTATGGGTTCTTAATTGGTTTTGCATGAGGCTTTTGTTGTT
TTAGTGTGATGACGCCATTCGTCCTAAGTGCATTGTTGTATTCTTTTTAA
ATCTTCTGCGGCTGTTTTGAAGATAACTGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002060XLOC_002060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003700-exon-sc0000030-1491911889:704681..705413TCONS_00003700-exon-sc0000030-1491911889:704681..705413Clytia hemisphaericaexon
TCONS_00003700-exon-sc0000030-1510915933:704681..705413TCONS_00003700-exon-sc0000030-1510915933:704681..705413Clytia hemisphaericaexon
TCONS_00003700-exon-sc0000030-1575043694:704681..705413TCONS_00003700-exon-sc0000030-1575043694:704681..705413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:704681..705413 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135411	0	0.0778559	0.075942	0.18261	0	0.0870463	0	0	0	0	0.135275	0.0455693	0.188072	0	0.0415229	0	0.0520954	0.0719726	0.0753141	0.200411	0	0.0816156	0.0705769	0	0.194629	0.0928378	0.099079	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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