TCONS_00003698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003698
Unique NameTCONS_00003698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003698 ID=TCONS_00003698|Name=TCONS_00003698|organism=Clytia hemisphaerica|type=transcript|length=848bp
tgattttattttatttatataatCTTCAAAATACATGTTGACACCCACTG
tatatcaatattttattttctaggaacatttaatgattttattttattta
atcttcatgcaaagaaaaaagtgTTCTGATTgtaaggttcttaaaaaaac
ttgtttgttgttataaaaataacTGTTTTTAAACTATCTGATTCAACTGA
TGAAATATGAGAGAAGATCACATTCGACGACCCCAGTACCACAGCCTACA
ACAACCCCGCATATTTTTTGGAGCCAACGACTCAAATACACAAAAATCAT
CAGCAGTTATAACACGCAGTTAAAAcacaaaaatctacaaaaaatctggt
atttttactaaaaaattaaGCTCCCACAAACGCTACCATCATCTTCTGCC
ACAAAATCACCAACAATGGATGAGGATCCACCCAGTGATATATCATCCAT
TGACATAACATCAACAGAGACTCTACCAAAGTGTACAACTGCAAATTCCT
TCGTTCCAGACGAAGCAAACACCCTTAAATGCTCCATGGTAAAATGTTCT
CGTTTAGTTCCAAGTTCAAATACACTTAAACAATCAAACCCTGAAACGCA
ACAAAGCAACCTTCATCTGTTCAAGCTGTGTAGACATCTCAAAGGATATA
GAATCATTATGTATGGAGagcgaccaagaaaatttgaaaaatatcataaa
cgaGCATGATCGAACGATCAAagaatacaaaaagaaaaaggctGAGCTta
atcaaaaagtgaaaactcttaaaacaaagaataagaGCCTAGAAAACGAG
TCGTACACTGTAGAtgacttcgaaaaaaaaattaaagaacaaaTCGAC
Run BLAST on NCBI

transcript from alignment at sc0000030:698341..699188

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003698 ID=TCONS_00003698|Name=TCONS_00003698|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at sc0000030:698341..699188 (Clytia hemisphaerica)
GTCGAtttgttctttaatttttttttcgaagtcaTCTACAGTGTACGACT
CGTTTTCTAGGCtcttattctttgttttaagagttttcactttttgatta
AGCTCagcctttttctttttgtattctTTGATCGTTCGATCATGCtcgtt
tatgatatttttcaaattttcttggtcgctCTCCATACATAATGATTCTA
TATCCTTTGAGATGTCTACACAGCTTGAACAGATGAAGGTTGCTTTGTTG
CGTTTCAGGGTTTGATTGTTTAAGTGTATTTGAACTTGGAACTAAACGAG
AACATTTTACCATGGAGCATTTAAGGGTGTTTGCTTCGTCTGGAACGAAG
GAATTTGCAGTTGTACACTTTGGTAGAGTCTCTGTTGATGTTATGTCAAT
GGATGATATATCACTGGGTGGATCCTCATCCATTGTTGGTGATTTTGTGG
CAGAAGATGATGGTAGCGTTTGTGGGAGCttaattttttagtaaaaatac
cagattttttgtagatttttgtgTTTTAACTGCGTGTTATAACTGCTGAT
GATTTTTGTGTATTTGAGTCGTTGGCTCCAAAAAATATGCGGGGTTGTTG
TAGGCTGTGGTACTGGGGTCGTCGAATGTGATCTTCTCTCATATTTCATC
AGTTGAATCAGATAGTTTAAAAACAgttatttttataacaacaaacaagt
ttttttaagaaccttacAATCAGAAcacttttttctttgcatgaagatta
aataaaataaaatcattaaatgttcctagaaaataaaatattgatataCA
GTGGGTGTCAACATGTATTTTGAAGattatataaataaaataaaatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002058XLOC_002058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003698-exon-sc0000030-1491911889:698341..699188TCONS_00003698-exon-sc0000030-1491911889:698341..699188Clytia hemisphaericaexon
TCONS_00003698-exon-sc0000030-1510915933:698341..699188TCONS_00003698-exon-sc0000030-1510915933:698341..699188Clytia hemisphaericaexon
TCONS_00003698-exon-sc0000030-1575043694:698341..699188TCONS_00003698-exon-sc0000030-1575043694:698341..699188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:698341..699188 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.340988	0.649697	0.464109	0.464585	0.149746	0	0.285523	0.0795152	0.514649	0.289762	0.360352	0.267974	0.332326	0.282007	0.223217	0.473659	0.250075	0.12816	0.11804	0.18528	0.729663	0.423598	0.381954	0.231501	0.536491	0.477835	0.45678	0.622365	0.521175	0.251139
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top