TCONS_00003686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003686
Unique NameTCONS_00003686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003686 ID=TCONS_00003686|Name=TCONS_00003686|organism=Clytia hemisphaerica|type=transcript|length=292bp
CTTTGATTTTCTATAAACAACATCCACTTCGCGCACAGAAAATGTCCCGG
TGTAACCcgtacttaaaaacaaatattaacCACCTAAAAGCAGAGACTCG
CAGCTGTATTCCTTTAAGCACACGCCGCGAACACCTTGATCTCCAACTAG
AAGTTATCTTGCGATCGCGGCGCATGCCTTTGTGGATCCAGGCTTTAGAC
TATTTCTTTACATTCGCGTATGGATTCCAGGATTGCACGATTGCtagagg
aatttcaaaaattgaggtttttggtgggaaaaagaaaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000030:297256..297547

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003686 ID=TCONS_00003686|Name=TCONS_00003686|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0000030:297256..297547 (Clytia hemisphaerica)
atttttttctttttcccaccaaaaacctcaatttttgaaattcctctaGC
AATCGTGCAATCCTGGAATCCATACGCGAATGTAAAGAAATAGTCTAAAG
CCTGGATCCACAAAGGCATGCGCCGCGATCGCAAGATAACTTCTAGTTGG
AGATCAAGGTGTTCGCGGCGTGTGCTTAAAGGAATACAGCTGCGAGTCTC
TGCTTTTAGGTGgttaatatttgtttttaagtacgGGTTACACCGGGACA
TTTTCTGTGCGCGAAGTGGATGTTGTTTATAGAAAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002046XLOC_002046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003686-exon-sc0000030-1491911889:297256..297547TCONS_00003686-exon-sc0000030-1491911889:297256..297547Clytia hemisphaericaexon
TCONS_00003686-exon-sc0000030-1510915933:297256..297547TCONS_00003686-exon-sc0000030-1510915933:297256..297547Clytia hemisphaericaexon
TCONS_00003686-exon-sc0000030-1575043694:297256..297547TCONS_00003686-exon-sc0000030-1575043694:297256..297547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:297256..297547 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76655	1.27319	2.0639	6.45285	1.23018	0.942791	0.587712	1.05525	2.55723	2.75576	2.58981	1.46033	0.862799	2.07383	0.734342	2.16621	0	1.66738	0.461683	0	3.01402	2.47378	0	2.24126	0.994445	2.11651	1.22035	1.89403	0.945739	3.52174
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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