TCONS_00003662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003662
Unique NameTCONS_00003662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003662 ID=TCONS_00003662|Name=TCONS_00003662|organism=Clytia hemisphaerica|type=transcript|length=1573bp
CGGCGGGTGGCAAGCACCCCACTCAAAGGATTAATGCGCCTGCGCATTGG
CGAAATTCTGGAATTGCGCGCGCGAAAATCCATCAAACTGCTTTTAACCA
GTTTGAGTTTACCATTGATAACGCCTGCAGTGAACAGCCTTTCTTATTCG
GGTTGAAGCATCGAAATCTCATAATATCTGGACAATCTTTACACATTGTA
TACAAAACAACATAATGGCAAATACCGAAGATGTCAAAGCTAAATTCAAG
CTTGTTCTTGTTGGGGATGGAGGTACTGGGAAGACAACCTTTGTTAAAAG
ACATTTAACtggagaatttgagaaaaaatatattgCTACACTTGGAGTCG
AAATTCACCCTCTTAAGTTCTACACAAACTTTGGTCCTATTCAATTTAAT
TGTTGGGATACTGCAGGTCAAGAAAAATTTGGTGGACTTCGAGATGGCTA
TTATATTAGAGGAAACTGTGCTATTATCATGTTTGACGTCACTGCTCGTA
TTACATATAAAAATGTGCCAAATTGGCATAAGGATTTAGTTCGTGTATGT
GAAAATATTCCAATTGTTTTGTGTGGAAACAAAGTCGATGTAAAAGAACG
TAAAGTCAAAGCGAAATCAATCACATTCCACAGAAAGAAGAATCTCCAGT
ACTACGATATCTCTGCCAAAAGTAACTACAATTTCGAAAAACCCTTCTTA
TGGTTGACACGTAAATTGACCGGTGAAGCTGAATTGGAATTCGTTGAAAT
GCCTGCCCTTCAACCACCAGAAGTTCAAATAGACCCTCTTCTTCAAAAAC
AATTCGAGAAAGATTTACAGGAAGCTCAAAATTGCGAACTCCCTGATGAC
GATGGGGATGATATCTAAAGAGGAAGACAAATTCAAATAATGAGAATTTT
TCGCAATGGTTTAGTTTGGTATTTTATAATATTTCCAGAAGAAAGTGCTA
CATTTCAACCCCTAACCATCACACGATTGGTGATAAcaatgttcttgtaa
aatgcTTATTAACACAGAAGAATGAACTGGATATGTCGATAATAACACAA
CATTTCATTTGTACATAACATTAATGACCTGATTTTATCGCTTTTTCGAT
AGTAAACTTGCAAGAATCTAGCGTTCCACTTTTTAAAAACTCCTTACATT
GAACGTTTTTTGgataattatttattttttccaacaCTGTGCATCAACGA
AGTGTAATTCTACCAAtgaaaatgtcttacaatatgATCCAACTTTTCAT
AATACATTAAAAGATCAAATAATAAAGATTTCCTATCTTCTCCTATCTTT
TGTATTGCATCCTTAAAACTTTTTACCattgaaattacaaaactgGGATG
TGATATTCTACCGTTTTAATCccagttttcttcttttttgcgAAGTTTTT
AAGTGAGGAAgtataataaaaagaaaacttgGATATACAACAATAATTGT
ATTCTTTTTGTCTTCGAAGTGGTCTCGACCCATTTCTacattagtactag
taatcgtatggtttggagtgcaattaacgattaatcacgagtaacaaaga
aaataataatttacagtccgaag
Run BLAST on NCBI

protein sequence of TCONS_00003662-protein

>TCONS_00003662-protein ID=TCONS_00003662-protein|Name=TCONS_00003662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MANTEDVKAKFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEIHPL
KFYTNFGPIQFNCWDTAGQEKFGGLRDGYYIRGNCAIIMFDVTARITYKN
VPNWHKDLVRVCENIPIVLCGNKVDVKERKVKAKSITFHRKKNLQYYDIS
AKSNYNFEKPFLWLTRKLTGEAELEFVEMPALQPPEVQIDPLLQKQFEKD
LQEAQNCELPDDDGDDI
Run BLAST on NCBI

transcript from alignment at sc0000030:620925..631245-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003662 ID=TCONS_00003662|Name=TCONS_00003662|organism=Clytia hemisphaerica|type=transcript|length=10321bp|location=Sequence derived from alignment at sc0000030:620925..631245- (Clytia hemisphaerica)
CGGCGGGTGGCAAGCACCCCACTCAAAGGATTAATGCGCCTGCGCATTGG
CGAAATTCTGGAATTGCGCGCGCGAAAATCCATCAAACTGCTTTTAACCA
GTTTGAGTTTACCATTGATAACGCCTGCAGTGAACAGCCTTTCTTATTCG
GGTTGAAGCATCGAAATCTCATAATATCTGGACAATCTTTACACATTGTA
TACAAAACAACATAATGGCAAATACCGAAGATGTCAAAGCTAAATTCAAG
GTAACAATTTCACTTTAAGGGTTGAAAATCGAGAAATTTCGGTGTTTTAC
TCTGACAGCTAATATTAACTGCTTAGCTCAATTTTAGAAATTCTCTCTCT
TTGAAGAAAAGGAGAAAAACTTGCACATCTCACTTTTGAACATCATCCAC
ACTTCTTCTGTCTGAAAGAACAGTGCAGTGGGGTGTTCAAGATAAAAATA
ATAGTTATTGGCTATTGCTCTTTTCTGCAAATATTGCCAAAAGCGGCAAT
ACACCGTTTAGGAGTCTCGCCATTTCACGGTACTCCATTGCAGAGGCCCG
GTAAAAATGGTAGGTAAAAATGCGCACTTTAGTACTGTGAAAGGTTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATTTCCCTTCGGCATGTTTTTTCAGAATT
TTTCTTCAAGTCGCCATTTTTTTCGAAAGTTTGTTTTTGTTTTGTTTTGA
AAGTGGCGGTCTATGGAGAGTCTTCATTTGATAAAAACGCGGGAATTTTT
TATATCTATTCCAGACTTCTTTTTTTCTCTTCGCGTCTGGAATGTTTTGA
TCGCAATGTAGAGTCTTCTTTTTCATTTTTTGAGTTTGGTCGGTCGCAGA
CTGGACGTCAAATTTCGAAGCTGATTGCATCAACTTTTTTATCAATATTT
CAAACGAAGGAAACTGTATCGAGCTGATTTTTACGGAAATGCTTTCTAAC
ATATTTAGCGTTTTGGACAAGTATTTTTTGGAGTGGGAGTTGAAGCGTTT
TTTCTTACGATGCTTTTTTGTCCACAGGTAGCCATTTTTTATTTTTTTCG
AAAAATCCGGGTTTTTCATGTGCTTCCGTGCAAAGTTGGATCTTTCGGAT
TCTACTCGTTCTTTTCTAGAACTTTTTTTACACAGTACAGGAAATAGGTC
AAGGCAGATTACTACCAAAAGAAATTCTTAAGAGGTTTGTTTTTGCATGA
CTTTTCTGGGTTCAAAGACGTTCGGTCGCCAACTAGACCGGTCGCCAACT
GGGCAGGGTACTCTATTTGTTCAACAATGAAATGGTAAATCAGCAGAGTC
TGGCGACCTCATCATGTGCGTTTGCTTAGGGTGAAATTTGAAATTGGCTA
TTTCAGAAAAAAATTGGATTAGGCATTAGGGGGTGGAAGGATAGGAATTT
TCAGATAGAAAAGGAAGTCCAGTTATTTTCAAAGCACAATGGAAATGCTG
CTTGATTTTTTATTTAAACCCATGGAAATTCCAGTGTGGAATTGGTGCAC
AGGCCACGCCAAAGGCGTAAAGACGATGTTGAATTCCTACGCGGAGGCGA
AAATTTTTTAACGAAGGGAAAATTTGTTCGCCGCAGGCGCGTTTTTTTTA
GCAGGGGGGTTTAGGGCAGGGGGCGCTGTTAGCCCCCCTAGTAGTCGAAG
CCCCCGAAAACCCTGGGATGTTAAGCATTTTCACGCCTGAAAGTTGGCTT
AGAATCTACTATTTTTCCTGGTTTGATGATTGAAAAAACTTGAAAGATAT
CTCCAGGGATTTTTTCAAGCACTTTGAGCTACTACCGTTTATGTATAATT
AGATTGAGTTTCAGATGCGTGACAAAACGCGAGCGAAGCAATCGCGATTT
GGAGCTGTAAGAAAATTTGTTACTCCAAATTTGGCCCTGGATTGCTTTAA
ACAAGAACAAAACGTGAATACATTAACGCCGCTTAATTAAAAATAGAAAG
ATTTTGGCCCATTTTACGGCGGTCCTTTTAACGCCGGCCCTTAATCACGC
CACGCACGAGCCCAAAAATAACACCAATAAGGGCCGGCGTAAAAAGGGCC
GATTAGGCCGATTACCTTTCCCGAATTGTTATTTAGGCTTTTTGACTTTT
TTGTTTTAATGTTTGAATGTTTCTATTTAGTTTCATAAAATTGTATGTTG
CAAAACTAAACAAATAAAAAAAGAATTATGAAAAAAGCACTTCCGTTTCT
TGAGTTATTTTGATTTGAAATTTCTTTATAAACAATAGAATTACATGGAA
ACGAGGCCGGGCTGTATGTTTTAGTTTTTATAAGGGATTTCACCTTGAAC
AAAAACAGTCATAAAAATTGATAGAAAAAAGCTTTCGAGCTCAAATTTTC
AGCATGCACTTGTGTTTATAGGAGAAATACAAATATATAGTTTTCAATAT
GGTTTGAAGACCTTCGAAAAAAACCAAACAATTCGGGAAAGGTGTATAGA
AAGAGTTGTGGCAAAAGCGAAAGAAGAAATAACAACAAATCTGCTTTTTT
TTAGGAAAAAATCTACAAAAGAATTTACAAGTAATAATGAGGATTCTCTT
AAAAATTCATTTCATCAAGAACAAATCTCACATACACCCCTGTCTCTTAC
TCTATTCTTTATCAAATTATGCGTGTTTCAAAGATCACTTTTATCAAATC
GCGTTCTTCGAAACTTTTAAGAGTGTTTCAAAGATCACTTTTATCGAATC
GCTTTTTTCGAAACTTTTAAGAGTGTTTCTAAGATCACTTTTATCAATTC
GCTTTTTTCGAAACTTTTAAGAATGTTTCTAAGATCACTTTTATCAAATC
GCTTTCTTCATAACTTTTAAGAGTGTTTCAAAGATCACTTTTATCGAATC
GCTCTTTTCGAAACTTTTAAGAGTGTTTCTAAGATCACTTTTATCAAAGC
GCTTTTTTCGAAACTTAAGAGTGTTTCTAAGATCACTTTTATCAAATCGC
TTTCTTTGCTTCTTCACTTTCTTTTTTCGCTTTTTTCGAAACTTTTAAAA
GTGTTTCTAAGATCGATCTTATCAAATCGCTTTTTTGTAACTTTTATGAG
TGTTTCAAATATCACTTTTATCAAATCGCTTTATTCTTTGTGACTTTTAA
GAGTGTTTCTCAGTTCACTTTTACCAAACTATCCACTTTCTCTATTACTG
CAGCGAGTATTGTCCCAAGGTCACTTTATCTATAGCTTTACGTGTAACTT
TCAAAAGCTAGCTTCTTATAAACGAGGTTAGAAAATATATTCTGCTAGTT
GAAAAATTCCGACGAATGAATGACCGAGAAGATTTTAAGTTTTATCGACT
GGATTTGATTTCAGTCGGACATAATGTCCGATTGCAGTCCTGCATTGTCC
AAAATAATAATAAAGAATTTCAATGAGTGGGGCAGAGGTATACCAAACTT
CATTTTTTATTAGGTTATTCTTATACAGGTTTTCTCTAAAAGATTATTAG
TGGTAGGACAGGGGTATCTTCAAAGTTTTTCTTTTAACTTTAAATAGTCT
GATTTTGTTTTTCAAATGTTGATTTGATTTGACAAGAAAAGTTCCTAAAG
CTTCCTTATACCTCATCGACCCCGAATAGTTCTTTTAAAGCAATTTTGCT
GTAAATCTGTAATGACTTTTATTTCAATTTTGACCCCTTCTATAAAGTTA
TCCTTTTGAAAAAAACTTTAATGAAAGAAGTAACTCAATAAGTAAATTCA
TTCCCCTTTCCAAAAATCCAAGTAAATGCAAAATAAATTTTCTTAGAAAT
CTTTTCCCATTAAAATCCATTTGTTGCGTATGTTAAACCGTTTGTGACAA
ACGGTTTTTTGAATGATTCTTTAAAAGCATTCGCGGCAAACGGAAAAGCA
TACTTCGCGTATAAACGGTTTTTTGAATGATTCTTTAAAAGCATTCGCGG
CAAACGGAAAAGCATACTTCGCGTACGGTTTCATATCTCAAGTTTTCGTA
AGCGTTCTTCACGAACGGTTTTCTTTTTAGGCCGTTCGTCACAAACGGGT
TAAAAAGCATAAGCGAACGGTTAACCCGTTCGTCACGAATAGAAAAGCGT
TCGTGTCCAAATCGAACGGTTTCTGACCCAGTAGTGTTGTCTTTACTCTA
TACTGATTAAAAACAAACAATTGAATTGGCGTTTCTGAGAAAACTGCTTT
GAAACTTTTTTCTTGTAAATTTTTTTTTANGTCCGAATCGAACGGTTTCT
GTCTGACCCAGTAGTGTTGTCTTTACTCTATACTGATTAAAAACAAACAA
TTGAATTGGCGTTTCTGAGAAAACTGCTTTGAAACTTTTTTCTTGTAAAT
TTTTTTTTATATTTCAGATTGAGTTTCATAACCCAATCTTGGATTGAGTA
TTTTTGCCGGTATACGGTAGTAAAAAAGTGCTTAGAAAAATCCCTGATAT
CTCATATTTATTTAATAAATTCTGTTCGGAAGAAAGCGATACAGCGATAA
AGGGGAACGGTAAACTGCGATCTCACGGGCGGACGGGTGGTTTCTGAGGC
GAACGGTGTTATTCTTCCGCTTTGTCATCCGTGTTCGACTTTTTGCTTGA
AGCTGAAAGAGAAACAATCCGGCGTATACTGCCAATGAAAATGCGCTATG
CGTAAGATAAACATTGTGCATTAGACTAATGATTTATAATCGGATGAATT
TCGGGTGAACAACAGATTACTGAGAAGAATGAATCGAATATTGCCGTTTG
CTAAACTTATCGAAAATGGCAAGAAGTGCTCCTGTGTTCTGTCGTCGTGT
GTTGTCCTGAAAATAAAAATTTGAGTATCAGTATCTTACTTTGTAGCTGC
TCCTTACGCCAATACGCCAAAAGGAATTAGAGCCTCACGCCGAATATATT
CGGAGTAGCGTGCACCATTTCCAGACTGGTGGAAATTCCTTAGAATTTGT
CAAAATGCTTAAAGAAGCCAGACTGTCAGTGCCTATAGTAGCCAAATTAG
GAATATTTTTCTTATTTTTTCCTAATTGGGAAGAAAAATATTCCTAACTT
AGGAATATGGACAAACAACTAGATTAAAAAATTGCACGTTAAAAAGTACT
TAATAAGATTCTTACCATTCTAGTGGGAAAGAAAGATTGAGCTCTTGAAT
TACTTGGGGGACCGATCTTTACTCTTGTCTCCCGAATAGACGTCCCCCGC
TAATTGTTAAGAGAAAAAAATCCATCCACCCTGCTCTTATTAAGACTCCC
CCCCGCTAATTAAATTCGAATAATTCAATATTTTATTACAGTGTAGATAG
ACCTTAAACTTGTTAAAATTTTCCTTTTTGTTAGTATTGTTTCTTATTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGTCCAGTGCTGCA
AATAACGGCCGATGACCGGTCATTTTGTAGTTTCTACCGGTCATTCTGAA
GCTCAGTTTTTCCATTTTGTCCGGTTAAAATTTTAGATTAGAGGCTTCTT
AATAGCGCTTCTAATTAAAAGAGGAGTTTTTAAATCAAAATAGGTGTTTC
AGCCAATCTAAAGGTCATTACAGACTAATATGGACCAGACCCCCTGCTCG
TTACACTCGAAAATTTACCGGCCAACTGAAATTTCCCTATTTGCACCACT
GCCCGTCTATTCAGGAGACAAGAGTAATTCCTAGAAATTTTCATTGTTAT
GTTCAAATACCTAAATCATTGACAATAAAAAGGACAATATTTACATTCCT
CTAACCTTCCACAGTACTAAAGTGCGCATTTTTACCTACCGCCTTCACGG
TGGAGATGCAAGACTTCTAAACGGTGTATTGTAGATGTAATGCGAGAATT
GCAATCGAACCAATCAATGTAATCGAATATCAATAATTTGATTGTGTGTT
TAGTTGATTCAGCATTCAATTCTTTCGATTGACACCTTATGCCACCTTCA
TTTAACTTCCTTTATATCTTGTTCTTCAGAAAAACCAAAGATGCCTTTTT
TGCTGATTTAGCATTTCATTGTTGAAAAATAGCTGTCAATGATTGTAATT
TTTATCTAAAACACCCCACTGCAGAATCTCTGAATCTTGCTTTTTCTTCT
AGCACAATAAAAATTGCTTACAGTATTACCATTTCAACAATTTAAAAACA
GTTCCACTAACACATTTTTTTGTTGCCTGTTTTGTTTGGGGTTACTTCAT
CTGTCCTACAACTATCACATCTAAAAGCAACCTTTCGAAATTCCAGAATG
GTAAAAACCGCAAACATTAGAACCCGCGAAATGCAATTTTTCGTAAATTT
TTTTGACCGCGAAAATTAGTTCCAATAAGGTAATTGACGAGATTGACGAG
CGTTTTACTAAGCGCGAGCGCGATCGCGCACATCTTATTGAAAAGCATGG
TATACCTTATATGGAAATTTAATTTTTTTCTCTTTTGTCTTAGCTTGTTC
TTGTTGGGGATGGAGGTACTGGGAAGACAACCTTTGTTAAAAGACATTTA
ACTGGAGAATTTGAGAAAAAATATATTGGTTTGTATTTTTTTCATTTTAA
TTGCTTTCTTGGCTAATAATATTTTGATCTTAAACTTTTTTCAAAATAAA
AAAAACGGGATCTGTTACCCAAAATAGGTAAACCCTTTGATATCCAACAT
TTTTTACTACCTGGTTCAGGTAAATGAAGTCTTTTGCAGTGTCACCACTA
CATTCCACTTTTTTTATGGCTTACTCTTAGGTTCCAAATAAACAGGGGGG
GGTTCAAATAAACGGGAGGGTTGGAAAATTTTCTAGATTGTAATAAACGG
GGGGGGGGGGGGGGGGAAATTGTACTTCTGAAACCCAAAAATAAGGTAAA
AATAGGCTAAAATCAGGCTATTTAGAGCAAAATAAGGGGCCTTCTCTTTG
ACAGCTGAAAATATTCCTAGAGATTAATAAATGGGGGGGTCCTAATAAGG
TCCGGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGGGGGGGACGTT
TATTTGGAACCTAAGAGTATGCTTAAAAATGCATATTAAATATATTCTAA
ATTTGTTTTTTACTTACCATTTCAGCTACACTTGGAGTCGAAATTCACCC
TCTTAAGTTCTACACAAACTTTGGTCCTATTCAATTTAATTGTTGGGATA
CTGCAGGTCAAGAAAAATTTGGTGGACTTCGAGATGGCTATTATATTAGA
GGAAACTGTGCTATTATCATGTTTGACGTCACTGCTCGTATTACATATAA
AAATGTGCCAAATTGGCATAAGGATTTAGTTCGTGTATGTGAAAATATTC
CAATTGTTTTGTGTGGAAACAAAGTCGATGTAAAAGAACGTAAAGTCAAA
GCGAAATCAATCACATTCCACAGAAAGAAGAATCTCCAGGTGAGGTTTCA
GTTTTTTTAATAAGCAACTAGGGCTCGAGCCCTTAAAAATTAGCCAGATT
TTTTTCACTATCTCGTAAAGTAAAAGCTTTTTAGTTTTAATCCAAGCATG
GCAAACAACAACCCAATAAGCATAAATATGGTATAATATCAGGGGTGGTC
ATAGCAAATTTTTCAGAAAATGAGGTTAGAATATCGAGCAACCCCAGGCC
TGACCCAGGGGGGGGGGTGAAGCAGTTAGTACAAGACATCATGCCAGTTA
GTACCGTGGTGGTGTGCCATATGAATTGGATAAAATCACTTAGTACTCAG
ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTTGGTACTAACTGT
GTAAAAATAGGATTTTGTGAGAAAATTAAAAAAAAAGACCGTATTTTACC
AAAAAGAATTTTTGGGAAGTAGATTTTTTTTCAAATCTTAAAAACAATTT
GCTGGTTGCAATATAGCCCGGGGTCCACTTAAAGCTTTTTGATAGACTGG
ATGGCGCGATTAAGTGGCCCGGTAGTATATGGTAATATACTTTTGCCTAG
GCGGACTGTAAAACAGTCCGCCAGATTTTAGTTGTTTTTGGAAGGTAAAA
ACAGTATGAAGCAATGTTTTTATTTGAGAATAAGGAATTGCAAATCTGTT
ATTGATGTTTGTTTCTCATTTTTGATTACATCTTTCAACTCCAAGTAGTT
TTTTTTCTTATTTGGATTTTAAACATTCTTTTTCAAAATGGCGACCTCGC
CAAACGCTCCTAGTCTACTTCACTGGACTCAGCGTCATCAGAAATTATCA
AAAAGCAAAGTTCAGCCAGAAGTAGACTCTAGTCTAGTTGCAATAGAAAT
TTGATTTTCTAAAATGTTGTTTTTTCCTATTGAAAGCTATGGAAAATTGA
ATCATTTTTTTTAAGATATTAAATTTTATTTTATTTGATTTTATTGAATT
TATGAAGGTCAAAAGCCTTTTTCAAGGCTATATTCAGTTAGTACTAACTG
TACTAAGTGTACCAAGGTGGTGGTGTTACTAACTTCTTCCGAGAAAGCAG
TTAGTAGGCATGATGTCTTGTAATAACTGCTTCACCCCCTCCCCCCCTGC
CTGACCCAAAAAATGGAGCTTGCTTATAAAAAAAGATGTGTACTGACTCC
TTGTAGGAGACGTTTTTCTGGTACCCCAATTCTAATGCAGTTGTGCCAAA
ATGCAAACGGTATCCCTTAACAAATAACTTTCTTTCTTGCTCTTTAGTAC
TACGATATCTCTGCCAAAAGTAACTACAATTTCGAAAAACCCTTCTTATG
GTTGACACGTAAATTGACCGGTGAAGCTGAATTGGAATTCGTTGAAATGC
CTGCCCTTCAACCACCAGAAGTTCAAATAGACCCTCTTCTTCAAAAACAA
TTCGAGAAAGATTTACAGGAAGCTCAAAATTGCGAACTCCCTGATGACGA
TGGGGATGATATCTAAAGAGGAAGACAAATTCAAATAATGAGAATTTTTC
GCAATGGTTTAGTTTGGTATTTTATAATATTTCCAGAAGAAAGTGCTACA
TTTCAACCCCTAACCATCACACGATTGGTGATAACAATGTTCTTGTAAAA
TGCTTATTAACACAGAAGAATGAACTGGATATGTCGATAATAACACAACA
TTTCATTTGTACATAACATTAATGACCTGATTTTATCGCTTTTTCGATAG
TAAACTTGCAAGAATCTAGCGTTCCACTTTTTAAAAACTCCTTACATTGA
ACGTTTTTTGGATAATTATTTATTTTTTCCAACACTGTGCATCAACGAAG
TGTAATTCTACCAATGAAAATGTCTTACAATATGATCCAACTTTTCATAA
TACATTAAAAGATCAAATAATAAAGATTTCCTATCTTCTCCTATCTTTTG
TATTGCATCCTTAAAACTTTTTACCATTGAAATTACAAAACTGGGATGTG
ATATTCTACCGTTTTAATCCCAGTTTTCTTCTTTTTTGCGAAGTTTTTAA
GTGAGGAAGTATAATAAAAAGAAAACTTGGATATACAACAATAATTGTAT
TCTTTTTGTCTTCGAAGTGGTCTCGACCCATTTCTACATTAGTACTAGTA
ATCGTATGGTTTGGAGTGCAATTAACGATTAATCACGAGTAACAAAGAAA
ATAATAATTTACAGTCCGAAG

Coding sequence (CDS) from alignment at sc0000030:620925..631245-

>TCONS_00003662 ID=TCONS_00003662|Name=TCONS_00003662|organism=Clytia hemisphaerica|type=CDS|length=2616bp|location=Sequence derived from alignment at sc0000030:620925..631245- (Clytia hemisphaerica)
TACTACGATATCTCTGCCAAAAGTAACTACAATTTCGAAAAACCCTTCTT
ATGGTTGACACGTAAATTGACCGGTGAAGCTGAATTGGAATTCGTTGAAA
TGCCTGCCCTTCAACCACCAGAAGTTCAAATAGACCCTCTTCTTCAAAAA
CAATTCGAGAAAGATTTACAGGAAGCTCAAAATTGCGAACTCCCTGATGA
CGATGGGGATGATATCTAACTACACTTGGAGTCGAAATTCACCCTCTTAA
GTTCTACACAAACTTTGGTCCTATTCAATTTAATTGTTGGGATACTGCAG
GTCAAGAAAAATTTGGTGGACTTCGAGATGGCTATTATATTAGAGGAAAC
TGTGCTATTATCATGTTTGACGTCACTGCTCGTATTACATATAAAAATGT
GCCAAATTGGCATAAGGATTTAGTTCGTGTATGTGAAAATATTCCAATTG
TTTTGTGTGGAAACAAAGTCGATGTAAAAGAACGTAAAGTCAAAGCGAAA
TCAATCACATTCCACAGAAAGAAGAATCTCCAGCTTGTTCTTGTTGGGGA
TGGAGGTACTGGGAAGACAACCTTTGTTAAAAGACATTTAACTGGAGAAT
TTGAGAAAAAATATATTGATGGCAAATACCGAAGATGTCAAAGCTAAATT
CAAGTACTACGATATCTCTGCCAAAAGTAACTACAATTTCGAAAAACCCT
TCTTATGGTTGACACGTAAATTGACCGGTGAAGCTGAATTGGAATTCGTT
GAAATGCCTGCCCTTCAACCACCAGAAGTTCAAATAGACCCTCTTCTTCA
AAAACAATTCGAGAAAGATTTACAGGAAGCTCAAAATTGCGAACTCCCTG
ATGACGATGGGGATGATATCTAACTACACTTGGAGTCGAAATTCACCCTC
TTAAGTTCTACACAAACTTTGGTCCTATTCAATTTAATTGTTGGGATACT
GCAGGTCAAGAAAAATTTGGTGGACTTCGAGATGGCTATTATATTAGAGG
AAACTGTGCTATTATCATGTTTGACGTCACTGCTCGTATTACATATAAAA
ATGTGCCAAATTGGCATAAGGATTTAGTTCGTGTATGTGAAAATATTCCA
ATTGTTTTGTGTGGAAACAAAGTCGATGTAAAAGAACGTAAAGTCAAAGC
GAAATCAATCACATTCCACAGAAAGAAGAATCTCCAGCTTGTTCTTGTTG
GGGATGGAGGTACTGGGAAGACAACCTTTGTTAAAAGACATTTAACTGGA
GAATTTGAGAAAAAATATATTGATGGCAAATACCGAAGATGTCAAAGCTA
AATTCAAGTACTACGATATCTCTGCCAAAAGTAACTACAATTTCGAAAAA
CCCTTCTTATGGTTGACACGTAAATTGACCGGTGAAGCTGAATTGGAATT
CGTTGAAATGCCTGCCCTTCAACCACCAGAAGTTCAAATAGACCCTCTTC
TTCAAAAACAATTCGAGAAAGATTTACAGGAAGCTCAAAATTGCGAACTC
CCTGATGACGATGGGGATGATATCTAACTACACTTGGAGTCGAAATTCAC
CCTCTTAAGTTCTACACAAACTTTGGTCCTATTCAATTTAATTGTTGGGA
TACTGCAGGTCAAGAAAAATTTGGTGGACTTCGAGATGGCTATTATATTA
GAGGAAACTGTGCTATTATCATGTTTGACGTCACTGCTCGTATTACATAT
AAAAATGTGCCAAATTGGCATAAGGATTTAGTTCGTGTATGTGAAAATAT
TCCAATTGTTTTGTGTGGAAACAAAGTCGATGTAAAAGAACGTAAAGTCA
AAGCGAAATCAATCACATTCCACAGAAAGAAGAATCTCCAGCTTGTTCTT
GTTGGGGATGGAGGTACTGGGAAGACAACCTTTGTTAAAAGACATTTAAC
TGGAGAATTTGAGAAAAAATATATTGATGGCAAATACCGAAGATGTCAAA
GCTAAATTCAAGTACTACGATATCTCTGCCAAAAGTAACTACAATTTCGA
AAAACCCTTCTTATGGTTGACACGTAAATTGACCGGTGAAGCTGAATTGG
AATTCGTTGAAATGCCTGCCCTTCAACCACCAGAAGTTCAAATAGACCCT
CTTCTTCAAAAACAATTCGAGAAAGATTTACAGGAAGCTCAAAATTGCGA
ACTCCCTGATGACGATGGGGATGATATCTAACTACACTTGGAGTCGAAAT
TCACCCTCTTAAGTTCTACACAAACTTTGGTCCTATTCAATTTAATTGTT
GGGATACTGCAGGTCAAGAAAAATTTGGTGGACTTCGAGATGGCTATTAT
ATTAGAGGAAACTGTGCTATTATCATGTTTGACGTCACTGCTCGTATTAC
ATATAAAAATGTGCCAAATTGGCATAAGGATTTAGTTCGTGTATGTGAAA
ATATTCCAATTGTTTTGTGTGGAAACAAAGTCGATGTAAAAGAACGTAAA
GTCAAAGCGAAATCAATCACATTCCACAGAAAGAAGAATCTCCAGCTTGT
TCTTGTTGGGGATGGAGGTACTGGGAAGACAACCTTTGTTAAAAGACATT
TAACTGGAGAATTTGAGAAAAAATATATTGATGGCAAATACCGAAGATGT
CAAAGCTAAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002029XLOC_002029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003662-exon-sc0000030-1575043694:630996..631245TCONS_00003662-exon-sc0000030-1575043694:630996..631245Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1575043694:624118..624202TCONS_00003662-exon-sc0000030-1575043694:624118..624202Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1575043694:623257..623570TCONS_00003662-exon-sc0000030-1575043694:623257..623570Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1575043694:620925..621848TCONS_00003662-exon-sc0000030-1575043694:620925..621848Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1510915933:630996..631245TCONS_00003662-exon-sc0000030-1510915933:630996..631245Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1510915933:624118..624202TCONS_00003662-exon-sc0000030-1510915933:624118..624202Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1510915933:623257..623570TCONS_00003662-exon-sc0000030-1510915933:623257..623570Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1510915933:620925..621848TCONS_00003662-exon-sc0000030-1510915933:620925..621848Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1491911889:630996..631245TCONS_00003662-exon-sc0000030-1491911889:630996..631245Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1491911889:624118..624202TCONS_00003662-exon-sc0000030-1491911889:624118..624202Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1491911889:623257..623570TCONS_00003662-exon-sc0000030-1491911889:623257..623570Clytia hemisphaericaexon
TCONS_00003662-exon-sc0000030-1491911889:620925..621848TCONS_00003662-exon-sc0000030-1491911889:620925..621848Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003662-proteinTCONS_00003662-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:620925..631245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1570.32	1595.33	1531.91	1573.92	400.943	309.819	417.52	429.503	471.234	323.737	460.626	484.364	588.879	557.472	597.373	554.58	557.317	613.879	290.416	308.553	695.896	663.045	1000.83	897.973	745.338	841.577	466.468	448.057	544.746	609.193
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002041Ran_GTPase
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007165 signal transduction
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00003662 vs. Swiss-Prot (Human)
Match: RAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 358.607 bits (919), Expect = 4.245e-121
Identity = 167/210 (79.52%), Postives = 184/210 (87.62%), Query Frame = 2 
Query:  215 MANTEDVKAKFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEIHPLKFYTNFGPIQFNCWDTAGQEKFGGLRDGYYIRGNCAIIMFDVTARITYKNVPNWHKDLVRVCENIPIVLCGNKVDVKERKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLTRKLTGEAELEFVEMPALQPPEVQIDPLLQKQFEKDLQEAQNCELP 844
            MA   + + +FKLVLVGDGGTGKTTFVKRHLTGEFEKKY+ATLGVE+HPL F+TN GPI+FN WDTAGQEKFGGLRDGYYI+  CAIIMFDVT+R+TYKNVPNWH+DLVRVCENIPIVLCGNKVD+K+RKVKAKSI FHRKKNLQYYDISAKSNYNFEKPFLWL RKL G+  LEFV MPAL PPEV +DP L  Q+E DL+ AQ   LP
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALP 210
The following BLAST results are available for this feature:
BLAST of TCONS_00003662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAN4.245e-12179.52GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
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