TCONS_00003654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003654
Unique NameTCONS_00003654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003654 ID=TCONS_00003654|Name=TCONS_00003654|organism=Clytia hemisphaerica|type=transcript|length=909bp
tttatagaaatggcGCGTAATAGCCATTCAAAAGAAAAGTCTTTTGGCTA
TGGTTTGCAACCACCACCAATCATGGGTACAACCGATGACTTTGACAAAC
AAAGCATAATCGATCAATTAAGGAGGTCGNTCATGGGTACAACCGATGAC
TTTGACAAACAAAGCATAATCGATCAATTGAGGAGGTCAATGGTGACGTC
AGAAGATACAGGTGGTGGAGGATTGAAATATCGAAATTATTCGTCGAAAA
GACGTATTGAAAAAGATAAAACTGATTATTACCGAAAAGGTCCTGCACCA
ATTGAGGACTCAGACGCTTTAACAAAATCGACCTTGAAAGCGACTTACGG
GACTTTAGATTCTGATGTTGAGGATCTAGATTTCGAAGAAGTCAGACACC
AAAACTCCAAGAATAATTATTATAATAAGCTAAGGATAACTACTAATGAA
AGAGGGGACAATTTGGCGAGTTGTCGAGCTTTGATCGTTTATTTTTCTAA
ACTCGCCAAAAGTAAGGATGAAGAAGAGCTCATAGATTTAAATTTCGTTG
AGTCGCTTTTGGATAATGGGGCAGATATCAACTTCCCTGACAAACACGGT
CAAACAGCTTTACATGAAATAGCGAGAGGTTGGCATCCAGACGTAGCCCG
CTTTGCAATCGAGCATGGAGCTGATTTGAATAAATGTGATTCATTTGGGC
GGACGCCCCTTCATTTGGCGGCAGCCGTTGATTATGACGACATGGTTCAA
TTTTTAGTTGACAATGGAGCTGATCTTGGTGCAAAGACATACGGCGAAGA
GCAAACAGCAATGCATTATGCAGCCAAGAACAATGCAGCTTCTTCAATCA
AAGTCATGTTGAGATTGGGAGCAGCTATCAATGATCGAGATTATAAAAAG
AGAACACCC
Run BLAST on NCBI

transcript from alignment at sc0000030:545223..548106-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003654 ID=TCONS_00003654|Name=TCONS_00003654|organism=Clytia hemisphaerica|type=transcript|length=2884bp|location=Sequence derived from alignment at sc0000030:545223..548106- (Clytia hemisphaerica)
TTTATAGAAATGGCGCGTAATAGCCATTCAAAAGAAAAGTCTTTTGGCTA
TGGTTTGCAACCACCACCAATCATGGGTACAACCGATGACTTTGACAAAC
AAAGCATAATCGATCAATTAAGGAGGTCGNTCATGGGTACAACCGATGAC
TTTGACAAACAAAGCATAATCGATCAATTGAGGAGGTCAATGGTGACGTC
AGAAGATACAGGTGGTGGAGGATTGAAATATCGAAATTATTCGTCGAAAA
GACGTATTGAAAAAGATAAAACTGATTATTACCGAAAAGGTTTGTCTATA
CATTAGCGAGTTCCACTTTGATGATTTTCATAAAATAGAATAAGCCTTTC
AAGTGTTTTGACGCAAATTCGAGTTTTTCAATACTACATGAGCTTCGAAT
GTTTAAAGTGACGTCAAAAAATTGAATGTTTGGAGCCCAAGAATCTGGGC
TCAAAACATTCAAAAAAGTTGCAAAGTGGAATAGACGTTACAGCGTAGAA
AAAATGCCGCGACGTCTAGTATAGGCTAACTGTACATTGGCTTTCTATTT
CACACGAATCTCCCATCAGGGAATCATCAGCCATTTGGGGGAAATGTATG
TATGGAAACTTGTGATGAGTTGGAATCATCTATAGTGTGCACTCTATTTT
GTTTACACGTGAAAACCACTCCCAAGAGAGTTATTGTAATAAGGCTGACA
GGGTTTCTACATTGTAGCAAAAAAAACGCACATTAAAAGCCATGGATCAT
AGTTTGTTTAAATCGATCGTCAATCTTTTTCCATAAGGAAATTTCCCTCC
GATGGCTGATAATGGAAGGTTCACTTAAAATAAGAAAGTCAGTGTTCAGG
AAATTCCCGATCGTGAAACTATCATTCTACCTTATATGATTTCCAAACAG
ATCCACTACGGGTCAGATTTAATTTACTTTAACTTCACGTCAAACCAATT
CCTCTCTTGTTATTTCAGGTCCTGCACCAATTGAGGACTCAGACGCTTTA
ACAAAATCGACCTTGAAAGCGACTTACGGGACTTTAGATTCTGATGTTGA
GGATCTAGATTTCGAAGAAGTCAGACACCAAAACTCCAAGAATAATTATT
ATAATAAGCTAAGGATAACTACTAATGAAAGAGGGGACAATTTGGCGAGT
TGTCGAGCTTTGATCGTTTATTTTTCTAAACTCGCCAAAAGTAAGGATGA
AGAAGAGCTCATAGATTTAAATTTCGTTGAGTCGCTTTTGGATAATGGGG
CAGATATCAACTTCCCTGACAAACACGGTCAAACAGCTTTACATGAAATA
GCGAGAGGTTGGCATCCAGACGTAGCCCGCTTTGCAATCGAGCATGGAGC
TGATTTGAATAAATGTGATTCATTTGGGCGGACGCCCCTTCATTTGGCGG
CAGCCGTTGATTATGACGACATGGTTCAATTTTTAGTTGACAATGGAGGT
ATGCAACGATTTTCCATTATTTTAATCTTTACCATATGTCTTTCATTGAA
ATAGGTTGCCACACTCCACCATTGAAAATGGATGACAACGAACCCCGGGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCGGGGGGGGGGGGT
ACTAGGGTTGCGAGCTGACGGGGGGTGCTGCCCGACTTTCGAACTTTGGA
CCCTTACCGGGACTAAAAAAGAGAAAACAAAGGAACATTTTGGGAATTTT
ACGATCCTTAGCGGGACAAATTTGACCAAATTTCGATCTTTCAGGAGGTA
AAAAGTCGAAATTTTCCTATTTTCCCGACCTTTAGTGGGACTGAAATTTG
ATTTTCTGATTTTTCCAACTCTTAGCAGGACTTTGGAAGTCCAAAAAAGG
TACCCTTAAGGGCGGCACATACCGTACCCTCCATTTGCCTAAGTACCCCA
CCCCCTCCCCCGGGCAACGAACATGAAGTACCTTAAGTTAAAAAATGGAT
GACTACATTACTAACCTTAGCATGAGTTATCACAGGCATAACATTTTAAA
TAAATTACCAAATTCCTATAGTTAATAACAAATTACCACATCCTTAACAT
TTTGCAAATATATGATATTGAAATTTGAGACACTTATTGCTGAAAATGAC
TTTCCACATACCTGACATTGAAAATGATATAGCACATCCCTACTAATGAA
ACAATTCAAACATCTCTAATTTTGAAAAACGTTACTACGTACAAACACCT
GAAAACGTTTTACCACAAACATAATCATCAATGAACATGAACCAGCATAT
TCCAAAAATCAAAAATGAATTACCACAGTCCCAACTTCGAAAATGAATTA
CCACAACCCTAACTTTGAAAATGAAATACCACAGTCCTAACTTTGAAAAT
AGATTACCACAGCCTTAACTTTGAAAATGAATTATCACAGTCCTAACTTT
GAAAATAGATTATCACATTGTTAACTTTGATAATGAATTACCACAACCCT
AACTTTGAAAATTAATTACCACAACCCTAACTTTGAAAATTAATTACCAC
AGTCCTAACTTTAATAATAGATTACCACATTGTTAACTTTGAAATGAATT
ACCATAGCCCTAACTTTGAAAATGAATTACCACATTGTTAACTTTGAAAA
TGAATCACCACATACATAATACTAAAGAATACATTTTCAATCAATTCATT
GTGTCAAATTCCCATAAACCTTCCTTTTACTTTTCATTCCATAGCTGATC
TTGGTGCAAAGACATACGGCGAAGAGCAAACAGCAATGCATTATGCAGCC
AAGAACAATGCAGCTTCTTCAATCAAAGTCATGTTGAGATTGGGAGCAGC
TATCAATGATCGAGATTATAAAAAGAGAACACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002025XLOC_002025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003654-exon-sc0000030-1575043694:547818..548106TCONS_00003654-exon-sc0000030-1575043694:547818..548106Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1575043694:546659..547138TCONS_00003654-exon-sc0000030-1575043694:546659..547138Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1575043694:545223..545362TCONS_00003654-exon-sc0000030-1575043694:545223..545362Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1510915933:547818..548106TCONS_00003654-exon-sc0000030-1510915933:547818..548106Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1510915933:546659..547138TCONS_00003654-exon-sc0000030-1510915933:546659..547138Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1510915933:545223..545362TCONS_00003654-exon-sc0000030-1510915933:545223..545362Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1491911889:547818..548106TCONS_00003654-exon-sc0000030-1491911889:547818..548106Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1491911889:546659..547138TCONS_00003654-exon-sc0000030-1491911889:546659..547138Clytia hemisphaericaexon
TCONS_00003654-exon-sc0000030-1491911889:545223..545362TCONS_00003654-exon-sc0000030-1491911889:545223..545362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:545223..548106 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.253412	0.29654	0.161425	0.112285	0	0.270048	0.325802	0.488019	0.341673	0.541652	0	0.283027	2.78803	3.38014	0.143896	0.57671	4.41892	6.28242	3.92878	8.74474	9.55357	8.52838	2.88725	3.58474	8.43441	9.47009	0	0.335043	0.163693	0.420965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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