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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003644 ID=TCONS_00003644|Name=TCONS_00003644|organism=Clytia hemisphaerica|type=transcript|length=3197bpRun BLAST on NCBI protein sequence of TCONS_00003644-protein >TCONS_00003644-protein ID=TCONS_00003644-protein|Name=TCONS_00003644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp MENNSIGQYRSHDPPKNFAVRVTFWKVKPGSVIPTNRYQQNIELAEEAHERun BLAST on NCBI transcript from alignment at sc0000030:500849..516124- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003644 ID=TCONS_00003644|Name=TCONS_00003644|organism=Clytia hemisphaerica|type=transcript|length=15276bp|location=Sequence derived from alignment at sc0000030:500849..516124- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:500849..516124- >TCONS_00003644 ID=TCONS_00003644|Name=TCONS_00003644|organism=Clytia hemisphaerica|type=CDS|length=17853bp|location=Sequence derived from alignment at sc0000030:500849..516124- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00003644 vs. Swiss-Prot (Human)
Match: MKS1 (Meckel syndrome type 1 protein OS=Homo sapiens GN=MKS1 PE=1 SV=2) HSP 1 Score: 291.967 bits (746), Expect = 3.306e-86 Identity = 188/544 (34.56%), Postives = 313/544 (57.54%), Query Frame = 3
Query: 114 YRSHDPPKNFAVRVTFWKVKPGSVIPTNRYQQNIELAEEAHELV---------DQYNKDEEKEEVVIHWQEKLFSSREFDHYNDPLNCISALEKKYHDDIQYIKSSQGDRPNQRIFTYIDSDTAAMLHEFSQ-VTLSENEHQNVLMDKMSQNRYTGSFKPQAKLNQQGLRRRNIITNDPTQA-MKSNRIISTPVKLMKIMVDVGSTNSNGVRIEDERVICTVKINANGLIVIQPDIE-MDEIYTLETYHETRSVYRYQIEHASDEMSKDEKQQESKLFSELYNRHAQLMASQIGTDMAL-LPKRNELFVYNFCEIVLGRDFEYDSLYVVYSLDLPDG-WYTEDYGSLTGVTHRC---SMNKNKMANFSYPFQFQLQYTWPEENPCEFIKWPTLFFEVYSLDSWQRHRIEGYGYCQLPDIAGSTCFELDLWRPKGDSRDDEIRRFFIGGTPELEDTSYIKDLHGT--DEKVSKFFFKTVSTGTLVLRINTALQSKLDEKILNSTERFTKWKRTIKRTGGFAAAVDSLTQVLDAFHRARRRMLSAR 1688
YRS DP +N +RV ++ + + YQ EL ++ +L +++E+EE+VI WQEKLFS E D Y + C S L+ +Y +I +++S G + N+RIFTY DSD L E Q +T + +E + L+++M+ + + + G+ + I+T +P++ +++N +I+TP++ M IM D+G G + + E V+CT+K+++NG+I ++PD + Y +ET E + +++Y I++ S +E+++E ++F +LY RH + ++S +GTD + +P LFV E+V + +EYD+LYV + ++LP W + + L+GVT C S+ +K+A+FSYPF F+ + +E+ +WP L+ EV SLD WQR+R+EGYG LP GS + WRP E+RRFFIGG+ ELED SY++ + G+ E++S+F +T +TGT+ R++ QS+ + S+ + + + R GF+ S+ VL+AF RARRRM AR
Sbjct: 15 YRSRDPVRNLRLRVHLQRITSSNFL---HYQPAAELGKDLIDLATFRPQPTASGHRPEEDEEEEIVIGWQEKLFSQFEVDLYQNETACQSPLDYQYRQEILKLENSGGKK-NRRIFTYTDSDRYTNLEEHCQRMTTAASEVPSFLVERMAN---VRRRRQDRRGMEGGILKSRIVTWEPSEEFVRNNHVINTPLQTMHIMADLGPYKKLGYK-KYEHVLCTLKVDSNGVITVKPDFTGLKGPYRIETEGEKQELWKYTIDNVSPHAQPEEEERERRVFKDLYGRHKEYLSSLVGTDFEMTVPGALRLFVNG--EVVSAQGYEYDNLYVHFFVELPTAHWSSPAFQQLSGVTQTCTTKSLAMDKVAHFSYPFTFEAFFLHEDESSDALPEWPVLYCEVLSLDFWQRYRVEGYGAVVLPATPGSHTLTVSTWRPVELGTVAELRRFFIGGSLELEDLSYVR-IPGSFKGERLSRFGLRTETTGTVTFRLHCLQQSR---AFMESSSLQKRMRSVLDRLEGFSQQ-SSIHNVLEAFRRARRRMQEAR 543 The following BLAST results are available for this feature:
BLAST of TCONS_00003644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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