TCONS_00003639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003639
Unique NameTCONS_00003639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003639 ID=TCONS_00003639|Name=TCONS_00003639|organism=Clytia hemisphaerica|type=transcript|length=605bp
CGGGCCTAAAAATCAGTACATGTTACACTCCCCCAGTGTTAACACGTACA
CACGCAAACCACAATAACGAATCGTGTACTAGCCTAGCTAGCCAGGCTTT
CGTTTCTCCAAAATGGCGAAGATAGATGATGATTTGAAAGTGTTGATGGT
AGACAAGCGACAAGTCTCTGATCCCGTTGCTCACGCAGAATGGGCTGCCA
AGAAACTATGTTGGGTCCCTGACGAAGAACAAGGTTTTGTTGCTGCCTCC
ATTCTCAAgGAAGAAGGCGATAAGATTGTCGTCAAATACGATGCTGGAAA
ACAAGCCACATTCCACAAAGACGATATCCAACGTATGAATCCGCCCAAAT
TCGACAAAGTCGAAGATATGGCTGATTTGACATGTTTAAATGAAGCTTCC
GTCTTGCATAATTTGAAAGATCGTTATTTCTCCGATTTGATCTATACTTA
TTCAGGATTGTTTTGCGTTGTGGTTAACCCATACAAACGCATCCCAATTT
ACACCGACAAAGTTGTAGCCTCATACAAAGGCAAAAAACGTTATGAAGTA
CCACCTCACGTCTACGCTATTGCTGATAATGCCTTCCGATCAATGTTGGG
AGGTA
Run BLAST on NCBI

protein sequence of TCONS_00003639-protein

>TCONS_00003639-protein ID=TCONS_00003639-protein|Name=TCONS_00003639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MAKIDDDLKVLMVDKRQVSDPVAHAEWAAKKLCWVPDEEQGFVAASILKE
EGDKIVVKYDAGKQATFHKDDIQRMNPPKFDKVEDMADLTCLNEASVLHN
LKDRYFSDLIYTYSGLFCVVVNPYKRIPIYTDKVVASYKGKKRYEVPPHV
YAIADNAFRSMLGG
Run BLAST on NCBI

transcript from alignment at sc0000030:464575..466310-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003639 ID=TCONS_00003639|Name=TCONS_00003639|organism=Clytia hemisphaerica|type=transcript|length=1736bp|location=Sequence derived from alignment at sc0000030:464575..466310- (Clytia hemisphaerica)
CGGGCCTAAAAATCAGTACATGTTACACTCCCCCAGTGTTAACACGTACA
CACGCAAACCACAATAACGAATCGTGTACTAGCCTAGCTAGCCAGGCTTT
CGTTTCTCCAAAATGGCGAAGATAGATGATGATTTGAAAGTGTTGATGGT
AGACAAGCGACAAGTCTCTGATCCCGTTGCTCACGCAGAATGGGCTGCCA
AGAAACTATGTTGGGTCCCTGACGAAGAACAAGGTTTTGTTGCTGCCTCC
ATTCTCAAGGTAATAGCGAGTTTATGTATTCGAGATAAATTGAGGGGGAC
GCTATAAAGTAAAGTTGACATGTCTCCGAAATCACCGTCGAGGCGATATA
GAGCCGTACATCAACTATCGACTTTGTTTTGTATCGATTTCACTTACCGT
CGCCCTCGATATCCTCCGATACATAAACTCTGTAATATCTTTAAACATAC
AGTCAACTCTCTCTAATTCGAACCTCTATTATTTCTGTAATTCGAACTAA
ATCGTTGATCCCCTCAGCTAAGAAATTATTATAAAATACTGTCTGTAATT
CGAATCTTTCTCCGATTCGAACTAAAGTTTTGATTTCCTCAGCTAAGAAA
GTATTATAAAGTACTCTCTGTAATTCGAGTCTTTCTCTAATTCGAAGAAA
AATCCTGGCCACTTGAAAATCGAATTGGAGAGAGTCAACTGCATAAATGT
TTTACGCCTTTTGGTGTTCAAATTATCGGGCGGGAAGGGTGAGAGTCATG
AAAAAGTAGTTTCTTTTTAAATGGAAAGCTTCTATCTTGTTGGTTTTATT
AAAAGACCGTGTGTGCGCTCAGTGCAAGATTGAAAAGCAACCATTATAAT
ACTAAACATGAGCGTTCAGTTTAAACAATTTATAAAATTGAAGTTGTATT
TTAATACAACTAGGTTTTACTTTATACAAATTTTTAGAACTAAAGAAGCA
CTTCCCAAAATACTGAACATTCTTTTTCTTTATAGGAAGAAGGCGATAAG
ATTGTCGTCAAATACGATGCTGGAAAACAAGCCACATTCCACAAAGACGA
TATCCAACGTATGAATCCGCCCAAATTCGACAAAGTCGAAGATATGGCTG
ATTTGACATGTTTAAATGAAGCTTCCGTCTTGCATAATTTGAAAGATCGT
TATTTCTCCGATTTGATCTATGTGAGTAGCATATCTTATATTCATTTTAA
ATCCAACTCAAACTCGTACCCTTGCTTTCTTATGAAGCGCCGTGGAGAAA
AGTGTTCGAAGTTGATTTTGGTTCCTATTTTACAGCCTTCCAAAAAATCG
GTGTATAGTCGTCCAGTAAAACTGCATATTTCAATCTCTACTCTCATGAT
TGCCAACAAGTGTTTCAAAACTTGTTTCAACAACTAGGATTCAATTGACT
TTAAATAACCCAGCTGTTATACAACGTTGTTTCAACGTTTATCTAATGCT
CACAGTCCATATAACGTTAGATGAACATTGAAACAACATTGTATGTCAAC
TGTCATTATATTGATATCCAATTCTAGGCCGAGATATGCTTATTAAAAAC
ACGCGTTGCATTGCATTTTTTTATAGACTTATTCAGGATTGTTTTGCGTT
GTGGTTAACCCATACAAACGCATCCCAATTTACACCGACAAAGTTGTAGC
CTCATACAAAGGCAAAAAACGTTATGAAGTACCACCTCACGTCTACGCTA
TTGCTGATAATGCCTTCCGATCAATGTTGGGAGGTA

Coding sequence (CDS) from alignment at sc0000030:464575..466310-

>TCONS_00003639 ID=TCONS_00003639|Name=TCONS_00003639|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000030:464575..466310- (Clytia hemisphaerica)
ACTTATTCAGGATTGTTTTGCGTTGTGGTTAACCCATACAAACGCATCCC
AATTTACACCGACAAAGTTGTAGCCTCATACAAAGGCAAAAAACGTTATG
AAGTACCACCTCACGTCTACGCTATTGCTGATAATGCCTTCCGATCAATG
TTGGGAGGTGAAGAAGGCGATAAGATTGTCGTCAAATACGATGCTGGAAA
ACAAGCCACATTCCACAAAGACGATATCCAACGTATGAATCCGCCCAAAT
TCGACAAAGTCGAAGATATGGCTGATTTGACATGTTTAAATGAAGCTTCC
GTCTTGCATAATTTGAAAGATCGTTATTTCTCCGATTTGATCTATATGGC
GAAGATAGATGATGATTTGAAAGTGTTGATGGTAGACAAGCGACAAGTCT
CTGATCCCGTTGCTCACGCAGAATGGGCTGCCAAGAAACTATGTTGGGTC
CCTGACGAAGAACAAGGTTTTGTTGCTGCCTCCATTCTCAAGACTTATTC
AGGATTGTTTTGCGTTGTGGTTAACCCATACAAACGCATCCCAATTTACA
CCGACAAAGTTGTAGCCTCATACAAAGGCAAAAAACGTTATGAAGTACCA
CCTCACGTCTACGCTATTGCTGATAATGCCTTCCGATCAATGTTGGGAGG
TGAAGAAGGCGATAAGATTGTCGTCAAATACGATGCTGGAAAACAAGCCA
CATTCCACAAAGACGATATCCAACGTATGAATCCGCCCAAATTCGACAAA
GTCGAAGATATGGCTGATTTGACATGTTTAAATGAAGCTTCCGTCTTGCA
TAATTTGAAAGATCGTTATTTCTCCGATTTGATCTATATGGCGAAGATAG
ATGATGATTTGAAAGTGTTGATGGTAGACAAGCGACAAGTCTCTGATCCC
GTTGCTCACGCAGAATGGGCTGCCAAGAAACTATGTTGGGTCCCTGACGA
AGAACAAGGTTTTGTTGCTGCCTCCATTCTCAAGACTTATTCAGGATTGT
TTTGCGTTGTGGTTAACCCATACAAACGCATCCCAATTTACACCGACAAA
GTTGTAGCCTCATACAAAGGCAAAAAACGTTATGAAGTACCACCTCACGT
CTACGCTATTGCTGATAATGCCTTCCGATCAATGTTGGGAGGTGAAGAAG
GCGATAAGATTGTCGTCAAATACGATGCTGGAAAACAAGCCACATTCCAC
AAAGACGATATCCAACGTATGAATCCGCCCAAATTCGACAAAGTCGAAGA
TATGGCTGATTTGACATGTTTAAATGAAGCTTCCGTCTTGCATAATTTGA
AAGATCGTTATTTCTCCGATTTGATCTATATGGCGAAGATAGATGATGAT
TTGAAAGTGTTGATGGTAGACAAGCGACAAGTCTCTGATCCCGTTGCTCA
CGCAGAATGGGCTGCCAAGAAACTATGTTGGGTCCCTGACGAAGAACAAG
GTTTTGTTGCTGCCTCCATTCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002021XLOC_002021Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003639-proteinTCONS_00003639-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003639-exon-sc0000030-1575043694:466052..466310TCONS_00003639-exon-sc0000030-1575043694:466052..466310Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1575043694:465140..465325TCONS_00003639-exon-sc0000030-1575043694:465140..465325Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1575043694:464575..464734TCONS_00003639-exon-sc0000030-1575043694:464575..464734Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1510915933:466052..466310TCONS_00003639-exon-sc0000030-1510915933:466052..466310Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1510915933:465140..465325TCONS_00003639-exon-sc0000030-1510915933:465140..465325Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1510915933:464575..464734TCONS_00003639-exon-sc0000030-1510915933:464575..464734Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1491911889:466052..466310TCONS_00003639-exon-sc0000030-1491911889:466052..466310Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1491911889:465140..465325TCONS_00003639-exon-sc0000030-1491911889:465140..465325Clytia hemisphaericaexon
TCONS_00003639-exon-sc0000030-1491911889:464575..464734TCONS_00003639-exon-sc0000030-1491911889:464575..464734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:464575..466310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.181534	0	230.47	256.918	0.152617	0.109188	0.40353	0	269.614	216.158	0	0	0	0	0	0.343386	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004009Myosin_N
IPR001609Myosin_head_motor_dom
IPR008989Myosin_S1_N
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0016459myosin complex
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0005524ATP binding
GO:0051015actin filament binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016459 myosin complex
molecular_function GO:0051015 actin filament binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003774 motor activity
Blast
[Close]
BLAST of TCONS_00003639 vs. Swiss-Prot (Human)
Match: MYH11 (Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 6.730e-71
Identity = 111/165 (67.27%), Postives = 139/165 (84.24%), Query Frame = 2 
Query:  107 SKMAKIDDDLKVLMVDKRQVSDPVAHAEWAAKKLCWVPDEEQGFVAASILKEEGDKIVVKY-DAGKQATFHKDDIQRMNPPKFDKVEDMADLTCLNEASVLHNLKDRYFSDLIYTYSGLFCVVVNPYKRIPIYTDKVVASYKGKKRYEVPPHVYAIADNAFRSML 598
            ++  ++ DD K L VDK  ++ PVA A+WAAK+L WVP E+QGF AASI +E+GD++VV+  + GK+ T  KDDIQ+MNPPKF KVEDMA+LTCLNEASVLHNL++RYFS LIYTYSGLFCVVVNPYK +PIY++K+V  YKGKKR+E+PPH+YAIAD A+RSML
Sbjct:    2 AQKGQLSDDEKFLFVDKNFINSPVAQADWAAKRLVWVPSEKQGFEAASIKEEKGDEVVVELVENGKKVTVGKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVVNPYKHLPIYSEKIVDMYKGKKRHEMPPHIYAIADTAYRSML 166
The following BLAST results are available for this feature:
BLAST of TCONS_00003639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYH116.730e-7167.27Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3[more]
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