TCONS_00003622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003622
Unique NameTCONS_00003622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1846

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003622 ID=TCONS_00003622|Name=TCONS_00003622|organism=Clytia hemisphaerica|type=transcript|length=1846bp
ttcagaataagaaaaataataatagatTTAAGAAAATTAATTATAATTGT
AATCATGGAAGACGAAGCACCTGCTACTGTCATGGAAACCTCTCATTCCG
GACGTGAACGTACAAAGCGAACAAAACGACGGCACCGAGAtgatatgacg
tcatcatcagaTGATTCACCATCAGTAGAAAGAGGGCgtaagaagaagaa
aagaaagggAAAAAAGAAACATAATAGAAGAACTTCAACATCTTCGAGCT
CAAGCAGTAGAAGCAGATCATCATCCTCGTCAGACAGgggacaaaagaaa
aaaagacgaAGGAAAAAGAAACATTATAGAAGCTCTTCTTCCGATTCTTC
AAGTTCTTCAAGCAGTGTTGGCTCTCGTTCAAGTTGTAGCAATTCACCAT
CTCCATCACGtgacaaaaagaagaaaaagaagaaagataagaaacttcgg
aaaagtgaaaagaaagaacaaaaaaagTTGGAACGGAGATTaaaaaagat
gagaaaaaagAGTTTGCTGACGCTCGATTTGGTCAGCACATTATCGAAAG
AGGCTCAAGATGAAATCAAAAGCAAATTAATGGAGGAAAGAGTATGGAAA
CGAATTGAGAAAAGCACGTGTAATTATTGTCATAAATTATGTCGTGACGT
ACAATTGTGTTGGGAAAAGCATGATACTGTTTGTGGAAACAATGACGTAA
TAAATACTGATGCAAAACCTGGGAACGAGGCTGTCGATGTAAATGACTTT
GAGGGAGCGCCTGAGCCTGTGGAAGAAATCACTATTGAGGAAATTAGCGA
AACAAAGACGAAAGTTGCGGCTCGTATGAATACAATGAAACCAGAGATGA
TTGAAAAATACACATGTTCTTATTGTCGTAAATTTTGTCGTGATATGCCT
CACTTGAGAAGACATTTGGCTGTACACGAAGAAGGACGAAAGACATTTGT
TTGCGAGCATTGTTCAAAAGCTTTTGCAGCTTCATATCGTTTGAAAGACC
ACGTGAACATGGTCCATTTGAAACTTTATCCTTTCCATTGTTCAAAGTGT
GGAAAGGGATTTGCTAAACGAAAACGAACGGAGAGACACGAACTCGAATG
TAAAGGTGACCCACGTGCTAGTATGAATGAAAGTGAGGCTGCTGCTTGTG
AAATCGAGGCTGTTATTGTCCAAGATGAGGATGTTGGTGAGGATGAAGAA
GTTATTGAAGCCAAAACATGATTCGTTCAGGCTAGACCTTAAAATTCCTG
GTTTGctgtcacccgaccctagattttttAGATGGGTcgtcggccggaaa
aatttttttattttggtcattcatggaattttcgtctacattttgtaatt
tttgaagaagaaaaaattctcTTCGTCGAAATAGCAATAAAAGTTTTTAG
GTCGGCAAGTTTAGAGAAGAGTCGGTCAGCTGACGGtaaaccaacatttt
ttaaagttcaGCCTCGTGTATATGAGAAACCGTGTAACACAACACCCTAC
ACATAAGAAAAATTAGCACAACTCATATCCGTGCGAAGAACCTCGAGAAG
AATATGCTGCGATACACGTAGCCAAatactcgaacaagttttatggtccc
tttacaatgatttttaaaccttaaccctatttttatcagggggggtattt
tccaccaggctggcactcttttgctaatagctcactgaaatttgttttta
acactctgaaagtttttgacttttaatataatcctattagcagcatgtat
accaaattatACAATTATActccgaccagatcaggttttatgactatctt
gtgcaggcatatcataaaatccagctaaaaccctgcaaaatcccaa
Run BLAST on NCBI

transcript from alignment at sc0000030:340772..344409-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003622 ID=TCONS_00003622|Name=TCONS_00003622|organism=Clytia hemisphaerica|type=transcript|length=3638bp|location=Sequence derived from alignment at sc0000030:340772..344409- (Clytia hemisphaerica)
TTCAGAATAAGAAAAATAATAATAGATTTAAGAAAATTAATTATAATTGT
AATCATGGAAGACGAAGCACCTGCTACTGTCATGGAAACCTCTCATTCCG
GACGTGAACGTACAAAGCGAACAAAACGACGGCACCGAGATGATATGACG
TCATCATCAGATGATTCACCATCAGTAGAAAGAGGGCGTAAGAAGAAGAA
AAGAAAGGGAAAAAAGAAACATAATAGAAGAACTTCAACATCTTCGAGCT
CAAGCAGTAGAAGCAGGTATGATTCACTGTCCTTTATAAACCCTGGACCA
AGCTATATCCGCCATCTTTGGTCGATTTTTTTTGAAAGTGGTACCCGCAA
TGAAGCCATTGTAGTATTAAAGCTTTGCCTAACGACAAATGGCGCTACAT
AACTAGTGTCCAAGTAAAAGTAGATCTAGCGCTCTCGATGCGGGTACCAC
TTTAAAAAAAAACTCCGATCAAAAGATTTTGCTTGGCCGGGGTTGGGAAA
CTGCTTCCATGGTCTTTATAAAACTCAGTCATATCACTCTTCTTGAGGTG
GATAACAAGATATACAAGATTTCTTACAAATCACGCTTTAAGTGGGTTTA
ATTGTCAATTTTCCTTCTCCATGTACACGTTTTATTTATAAGAACAAACT
ATATAAGAACACCTGTTTCTTAGGTAAATGGAAAAAAATACTCAAAAAAT
GATGAAAATAAGAACAATTTAAGAACATCTATAGGAGTAAAGAACATCCG
ACGGCTTCAAAATTTTTGGATGTTCCTATAGGGAAAACGTGTACTAAGAA
TTGTTTTAGTACTACTATTTTGTAAAATATTTTGTTTTTGTGAGTTATTG
TCTTTTGTACTTAGATCATCATCCTCGTCAGACAGGGGACAAAAGAAAAA
AAGACGAAGGAAAAAGAAACATTATAGAAGCTCTTCTTCCGATTCTTCAA
GTTCTTCAAGCAGTGTTGGCTCTCGTTCAAGTTGTAGCAAGTAAGTTAAC
AAACTGCTCTCTTCCATAACAAGCCAGGAAGGGCTAAGTAGTATGCAGAG
GGGTCTCGACCCCTTCATTTATATTTTATGCTCCCTATGTATAAACCCTC
CCTAGAATCCTTATATTTACTTTACATTACATCTCTTCACAGGTCACTCA
CATCTCTTATACGTTCAAAAGTAGGATGAAAATATACTCTCGAGCCTGAA
TTTTATGTACCTTAAGTAGCAAAAGAGAATGAAGAACAATTTCATAGAAC
TGAAATCTCGTGATAATTGAGTGAAGTTTTACCGTGATAATCGAGTAAAG
CTTCATCACGAAATTTGAGATTTTTTCCTTTCAGTTCACCATCTCCATCA
CGTGACAAAAAGAAGAAAAAGAAGAAAGATAAGAAACTTCGGAAAAGTGA
AAAGAAAGAACAAAAAAAGTTGGAACGGAGATTAAAAAAGATGAGAAAAA
AGGTATCTTTCTATATAAATTTTCTTGAGCATTAAGGTTGCTGCATAGGC
TGCTGAGGTTCGACTCCCGCTCGCAGTGGTTCACTTGGCAAGTGAATGAA
CCTTCTCCTGGATCAACCTATGCCATGTGAGGGGCATTGGGTAGCCAGGT
CAAGGTGCGCTCAATGAATTCGTTTATACTTGCGAAAATGGGCTTTAAAG
CCTCCTGCAACTCAACAATACCGAAAGTAGAGTGGTGCAAATGAGGTCAA
AGGCGCCAGCGTTACAAACCAGGGGTCCACAGTACGAATCCCCACTCCTA
CGCAGAGCCGGTCGGCCGTAGTCTGAATCGCAGACCTCTACAAAACCCCA
GGTAGTATAGGAGCACGAATCCGTTAGTGGATGCAAGCAGCCTAGGTCGG
CCGTTGACTTAATGAAAAGTTACAAAAAAAACATTGTCTAAAAATCTCAG
TTTACTGGGCTGTCCGTGTATATATCTTAACTGCTAAATCATTTGATTTG
TACTTGAGGTACTTTGAACAAAAACGGGCTTGTAAACTTATACGGAAAGA
TAAAATACACCGGTGAAGCAGGTTACTACTATTGAGGCCTTGTTAAAAAT
GTCCAAAATATCCCTCTTGCAGTGCAAAATTATTTTATCTTCTCGATCAC
GAGAAGCAAATTCTTTCTATTATTCGAATCCTTCTGTGATTCAACTAAAA
TATTAAGCGCCCCTCTCAGCTAGAAAGTCATTTAAAATACTCTACGTAAT
TCGAGTCTTTCTATTCTTGGCATCCCTGAAGATCGAGGAATGAGGGGGGA
GTTGGCTGTAGTGTAGGTTGATCTGTGAAACTGGTGTATTTTATTTTTCC
AGAGTTTGCTGACGCTCGATTTGGTCAGCACATTATCGAAAGAGGCTCAA
GATGAAATCAAAAGCAAATTAATGGAGGAAAGAGTATGGAAACGAATTGA
GAAAAGCACGTGTAATTATTGTCATAAATTATGTCGTGACGTACAATTGT
GTTGGGAAAAGCATGATACTGTTTGTGGAAACAATGACGTAATAAATACT
GATGCAAAACCTGGGAACGAGGCTGTCGATGTAAATGACTTTGAGGGAGC
GCCTGAGCCTGTGGAAGAAATCACTATTGAGGAAATTAGCGAAACAAAGA
CGAAAGTTGCGGCTCGTATGAATACAATGAAACCAGAGATGATTGAAAAA
TACACATGTTCTTATTGTCGTAAATTTTGTCGTGATATGCCTCACTTGAG
AAGACATTTGGCTGTACACGAAGAAGGACGAAAGACATTTGTTTGCGAGC
ATTGTTCAAAAGCTTTTGCAGCTTCATATCGTTTGAAAGACCACGTGAAC
ATGGTCCATTTGAAACTTTATCCTTTCCATTGTTCAAAGTGTGGAAAGGG
ATTTGCTAAACGAAAACGAACGGAGAGACACGAACTCGAATGTAAAGGTG
ACCCACGTGCTAGTATGAATGAAAGTGAGGCTGCTGCTTGTGAAATCGAG
GCTGTTATTGTCCAAGATGAGGATGTTGGTGAGGATGAAGAAGTTATTGA
AGCCAAAACATGATTCGTTCAGGCTAGACCTTAAAATTCCTGGTTTGCTG
TCACCCGACCCTAGATTTTTTAGATGGGTCGTCGGCCGGAAAAATTTTTT
TATTTTGGTCATTCATGGAATTTTCGTCTACATTTTGTAATTTTTGAAGA
AGAAAAAATTCTCTTCGTCGAAATAGCAATAAAAGTTTTTAGGTCGGCAA
GTTTAGAGAAGAGTCGGTCAGCTGACGGTAAACCAACATTTTTTAAAGTT
CAGCCTCGTGTATATGAGAAACCGTGTAACACAACACCCTACACATAAGA
AAAATTAGCACAACTCATATCCGTGCGAAGAACCTCGAGAAGAATATGCT
GCGATACACGTAGCCAAATACTCGAACAAGTTTTATGGTCCCTTTACAAT
GATTTTTAAACCTTAACCCTATTTTTATCAGGGGGGGTATTTTCCACCAG
GCTGGCACTCTTTTGCTAATAGCTCACTGAAATTTGTTTTTAACACTCTG
AAAGTTTTTGACTTTTAATATAATCCTATTAGCAGCATGTATACCAAATT
ATACAATTATACTCCGACCAGATCAGGTTTTATGACTATCTTGTGCAGGC
ATATCATAAAATCCAGCTAAAACCCTGCAAAATCCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002014XLOC_002014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003622-exon-sc0000030-1575043694:344144..344409TCONS_00003622-exon-sc0000030-1575043694:344144..344409Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1575043694:343420..343545TCONS_00003622-exon-sc0000030-1575043694:343420..343545Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1575043694:342958..343075TCONS_00003622-exon-sc0000030-1575043694:342958..343075Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1575043694:340772..342107TCONS_00003622-exon-sc0000030-1575043694:340772..342107Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1510915933:344144..344409TCONS_00003622-exon-sc0000030-1510915933:344144..344409Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1510915933:343420..343545TCONS_00003622-exon-sc0000030-1510915933:343420..343545Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1510915933:342958..343075TCONS_00003622-exon-sc0000030-1510915933:342958..343075Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1510915933:340772..342107TCONS_00003622-exon-sc0000030-1510915933:340772..342107Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1491911889:344144..344409TCONS_00003622-exon-sc0000030-1491911889:344144..344409Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1491911889:343420..343545TCONS_00003622-exon-sc0000030-1491911889:343420..343545Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1491911889:342958..343075TCONS_00003622-exon-sc0000030-1491911889:342958..343075Clytia hemisphaericaexon
TCONS_00003622-exon-sc0000030-1491911889:340772..342107TCONS_00003622-exon-sc0000030-1491911889:340772..342107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:340772..344409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06029	0.816953	0.269483	0.714761	3.45181	2.87443	3.37997	2.95124	1.32966	1.68184	0.815584	0.578492	1.25853	0.856618	0.472806	0.470623	0.168391	0.42735	0.141774	0.31837	0.649765	0.670242	0.678065	1.19206	2.9222	2.79685	0.632395	0.574301	0.709524	0.506038
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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