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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003616 ID=TCONS_00003616|Name=TCONS_00003616|organism=Clytia hemisphaerica|type=transcript|length=186bp
gaaCAATCATCAAACAACTAAAAGTCATCCATCAAAACCACCCAAGGGAA
ACGACGAAACAGCGAACAATGTTGTTTCCAATGCTGGGCGTTCTTCTGCA
GCACCAAAGAAAAGAACGATGGTACCGATGACGAAAGAGGAATACGAAAA
ACAACAAAGTGTTGTCAGGAGAGTTTACGATCCAGA Run BLAST on NCBI transcript from alignment at sc0000030:330335..339294- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003616 ID=TCONS_00003616|Name=TCONS_00003616|organism=Clytia hemisphaerica|type=transcript|length=8960bp|location=Sequence derived from alignment at sc0000030:330335..339294- (Clytia hemisphaerica)
GAACAATCATCAAACAACTAAAAGTCATCCATCAAAACCACCCAAGGGAA
ACGACGAAACAGCGAACAATGTTGTTTCCAATGCTGGGCGTTCTTCTGCA
GCACCAAAGAAAAGGTACGTGGGTTACAGGGTTTTCGATAATCTCTGCTC
TAAGTTTATCTGAAAGTGGTTCTCCAACCACCACTACCTTAAGGGAAGAA
ATTTTCGTGGAATATAATTTTGCGGTTAAGAGGAATTTTTGTTTCAAATA
TGGCTTATTTTGCCCCAAAATTTTTAAATCAAGAGAATATTCTTGTTTCG
TGGAATTTGATTTCGCGGATTTGTCAAAAAACCGCGAAATTTTCTTCCCT
GATGTTTATAAAGCAACCATGTTTGAATAAAGGTTATGGAGACTACTGTG
TCATCTAAAGAGATAAATCAGTGTCGGTATGGATTTTGCAATTAATAAAA
AAGTCACAGTTTATTGTTTTCTTAACTACAGAACGCTGGTACCGATGACG
AAAGAGGAATACGAAAAACAACAAAGTGTTGTCAGGAGAGTTTACGATCC
AGAGACTGGCAGAAATAGGTATTAAATGAGCTGTCAACCTCTTATTTATT
CCCATCATTTTTTCAGAATTCAATCAAAAACAAAACACTAATTATCAACC
TTTAACCCTATTCAACCTAGGCTTTTAGGGGCGGTTCAGAACTAGGGGGG
GCTTTTCCTGTACCACCCCTTAACTTTTGATCTAGTGGGTCTTTTTGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGAAAAAAGTTCCCTGAGTTTAAAAT
GCTTATTTTATCCTAAATATTCAATAAATTACGGTTTAAAAGATATATTT
GACATCAAAAATAAATTTGTATTAGAAAAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAATGCTCAAGGTGTGAAAATATTTAGGTGTCAAATTTTT
TTTTATTTTGAAGCTAAATAAAAGTTAGGAATTTACAGAAAATTTCACGG
CAAAAGCTCTAATATTTCAGGAACTATTACCAATAGTTTGACCTCCGAAC
AGAAAGAGCCCCCCCCCCCTAGGCCGAATAGGGTTAAAGTGTGGGAGACC
AGGGGTTCGTGTTAAATTGACGTTAAAAAGCAGTTCTGACGCCTTGTAAA
TTTATTAAGAGACCCTTCAAAAGGCGACCGCGTCGTTAAGGAAAGATAGG
TGTATTTATCCGTCAGCTCTGGCTCAGAGTCGCGCGATATTCATACGTGG
AATGCTCGCTGTTAGCACTTTTAGGGAAGTCAGTTGTTTTCACGGGGTCC
ACGGCCATCAGGCTTGGGTATTTATAAATGAACTTAGCAAAAAAATAGGA
AAGAGTAGGGATTTGAACCGGAAACTGCGCATCCTTCAGGGAAAACAATT
ATTAAAAGAAATATATCTATAGAGGTCTGTGTATCAGACTACCTGGTTGG
TCCCTTAGATCAGTCTCTACTCGTGCCATTCCTCTGCTTGTTTTGCTTTA
GAGCACTTTGTGAAACAGAGATAACCCTCATGTTTTAGACTCTTATTTTC
TTTCATCTTTAGGCTGATCAAAGGCGATGGTGAAGTATTGGAGGAGATTG
TCAGCAAAGCAAGACATAAAGAAATCAATAAGGTACCTGCTATAATGTTG
TTAAACTACAATACTGGCCAAAAGTAAATGGAATCCTAATTATTCAACTG
TTTTTCTGGCTCCTCTTCTCCCCTACTACAATCTTGCAGAGTCAAGTTCG
ATTGAAATTCCACATTGTAAAGGGGTCAAAGGTGGGGGGGGGGGTTTTGT
GAATTCATACCAAAAAAGTAAGAAATTCCATTACTTTTGGCCATTATTTT
AGTCTTGATTTAGGAGTTATTCAAATAACAGCCCGATTACTGGATACTAC
AATTAAGGCCATAATATATTGAGAATTTTGGTTATTTTAACGTTTTTCAA
GATTTAAAGTTCTGGCGAGAAAGTCGATTTTTGGCTATCTTTTTAATTTA
ATCGAATATTTCAATTTGGGAGGGGCTGGCAGACTTCCAGGCTATATTCT
GAGTCTTATTGGACTATTTTTGAACTTTTGAATCCTCAGATCCTAAGGTC
CTAAGCTTTTAAGTCTACCGCTAAAACTCAGAGTTAAAACTCTACCCTTC
CAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTCAAAAACTTCCCG
GTGGATTTCCCTTTTTTCTCAAATATTATGACCTTGATTGTGGATCATGT
GGCTTTAAAGTGAGGAGTGGGTGGTCAACCAGTTAGAGGTTAAGGAAGAG
ATCTTTTGAAGGTTTATACGAAAGATTTAGATTGCTGACAATTTTCCTTA
CACTTACCGATCGAAAACAAGTTCCCAGTTTTTAATCCGTTTCCTGATGA
ACAGACAATCGGAATCGTGAATAGGAATTATCACTCTGATTAGAAAAAAT
ATGTTTTGATTAGTTTCTAAGGATTCAAGGTGAAAATTTCATGATAAGTT
TTTAAGTTTTTTTTATTGTCAGTTAAATCAAAATATTAGTTACTCGTAGC
AAGAGTAGAAATGAGGACTTAATTTCTACCATGGTTACCGTGTTTGACGA
TTGACTTCATCATTAAAAAATCTTTTTTCTCTATTGATAATAAAGAAACA
GTGGGTGCATTGCATCAAAGCTTCAAGCCTAGGTATCTCTAGGCTTTCAT
ATTTAAACTTTTCCTATCATCTAACAAATATTTGGGGGATGATAAATCTT
TGTCTGAGCATTCAAAGAGCTTGAATACACCCCTGTCTCAAAGCCCCGGT
GGAACTTTTTTTCTTCAGTGAAGATATAAATCCCTATTGAAATACCAATG
GGGATAAAAGTTTTATTGATCAAAGGTTAAAAAATCCAGTGAGGATGGTT
TTGGAGTGCAATTTTTAGACATTGATTTTTGAGAAGGGATGAAATCAAAG
TCAATTTACCATTAACACAGGGGTGTTTGAGTGAACTTTTCAAACACATT
GGAAAGCTAAGAATTTCGAAGTATTATTATTATCCAAAGAACCTTTTAGC
TCCAAGATATTTGCTATGAACAGTGAAGTGCAGGATACAGTTAGCTCTCT
CTAATTCGATCTTCAAGGAAGTTTCTTCGAACTAGAGAAATATTCGAATT
ACAGAGACTTTTTTATGCTGCTTTCCAGCTGAGGAGATCAATATTTTAGT
TCGAATAAATTGATAATATTGATCATTTGGACGTTTTCAGAATTTAAAGT
TCGATTTCAACACTTCCGGATCCAAAGTGTTACTCTCGGTCGCCTTATAA
ACGAGGGGGGGGGGGGGGGGANTTGATAATATTGTTCATTTGGACGTTTT
CAGAATTTAAAGTTCGATTTCAATACTTCCGGATCCTATGATCTTAAGGT
CCAAAGTGTTACTCTCGGTCGCCTAATAAACGAGGGGGGGGGGGTCGGAA
TAAACGGAGGACCTAATTACCGGGACCCGTTTATTAGGCATCTGAGAAGT
AAATTAGAGCACTTAAAAACCATTGTTATGTTTTAGATTTCGCAGGTAAT
TCCCCTTTTGTATCAAATATTATGATTTTTACATTCTAAGCTCTTCTGTT
TTTCAGCTCTAATGTTATTGTTGTTTTTAGTTGTCGACGAAGAATGACGG
AGAATACTTCGCCACGAGCATCGGTCTAAACCGTAAATGAAAGATCTTGT
TACAAATTCACAATATGTTGGTAATAACCGGTTAGTAATCATTGCGTTAG
TGCCACAGATTTCTGTAGAGTCTGAAGATGCTAGTTGGCATATTGTTGCT
ATTGTTTTTGAATACCTGCGAAGCTTCTTATTGGTCAAGCGCTGAAATTC
TATTGTAATGTCACGCCACCTAGGTAGGATTTCCTACCTAACCACACTTT
TCAGTCAAAGCGCACTAGATGGCTCCTTCGAGCTTTACAGAAATATGTGG
TTAGTGCTATCATTTTTCTTTGCATCAGTCAGGCTTATAGGGCACACGTG
GGAGCTAAACATGAAATAAAAGTTCGAAACCCTTAATTTGGTCCTATTTT
TTTCAGTACTAGTGAACATGCTGCATGTTAAGTATCAAAAGTTGACATTT
CACCCTGCTTCTCTAACAGTTAGCTGTAGAACATCACCAGACTTTAGAAT
ATGCAACAGTCGTAAACAAATACGGGCTTGTAAACTAATAAGGAAAAATA
AAATACACCGGTTAAAGCAGGTTACTACTATTGAGGCCTTGTTAAATATG
TCCAAAATATCCCTCTTGCAGTGCAAAATTATGTTATCTTCTCGGTCACG
AGAAACAAATTCTTTCTATTATTCGAATCCCTCTGTGATTCAACTAAAAT
ATTAAGCGCCTCTCAGCTAGAAAGTCATTTGAAATACTCTTCGTAATTCG
AGTCTTTCTATTCTTGGCTCCCTGAAGATCGAATGAGGGGGGAGTTGGTT
GTAGTGTAGGTTGATCTGTGAAACAGGTGTATTTTATTTTTCCAGAGTTT
GCTGACGCTCGATTTGGTCAGCACATTATCGAAAGAGGCTCAAGATGAAA
TCAAAAGCAAATTAATGGAAGAAAGAGTGTGGAAACGAATTGAGAAAAGC
ACGTGTAATTATTGTCATAAATTATGTCGTGATGTACAATTGTGTTGGGA
AAAGCATGATACTGTTTGTGGAAACAATGACGTAATAAATACTGATGCCG
AACCTGGGACCGAGGCTGTCGATGTAAATGACTTTGAGGGAGCGCCTGAG
CCTGTGGAAGAAATTACTATTGAGGAAATTAGCGAAACAAAGACGAAAGT
TGCGGCTCGTATGAATACAATGAAACCAGCGATGATTGAAAAATACACAT
GTTCTTATTGTCGTAAATTTTGTCAAGATATGCCTCACTTGAGAAGACAT
TTGGCTGTTCACGAAGAAGGACGAAAGACATTTGTTTGCGAGCATTGTTC
AAAAGCTTTTGCAGCTTCATATCGTTTAAAAGACCACGTGAACATGGTTC
ATTTGAAACTTTATCCTTTCCATTGCTCAAAGTGTGGAAAGGGCTTTGCT
AAACGAAAACGAACGGAAAGACACGAACTCGAATGTAAAGGTGACCCACG
TGCTAGTATGAATGAAAGTGAGGCTGCTGCTTGTGAAATCGAGGCTGTTA
TTGCCCAAGATGAGGATGTTGCTTGTGAAATTGAGGCTGTCCAAAATGAG
AATGTTGATGATGAAGAAGCTATTGAAACCAAAACATGATTCGTTCAGGC
TGGATCTAAAAATTCCTGGTTTACTGTCACCCGACCCTAGATTTTTTTAG
ATGAGTCAGTCGGTCGGAAAATTTCTTTTATTTTGTTCATTCATGGAATT
TTTGTCTACATTTTGTAATTTTTGAAGAAGAAAAAATTCTCTTCGTCGAA
ATAGCAATAAAAGTTTTTAGGTCGGCAAGTTTAGAGAAGAGTCGGTCGGC
TGACGTCAAATCAACATTTTTTAAAGTTCATCCTCCTCGTATATATGAGG
AACCGTGTAACACAACACCCCCGTCTTTCAGATCTGGTGGAATCTCCTAC
ACATAAAAAAATTAGCACAACTCATATCGGTGAGGAAAATCTCGAAAAGA
ATATGCTGAAATAAAAGCCCCTTTGAATAATACACGTAGCCAAATACAGT
GGAGTCGAACCACTATAACTCGAATGTCCCATAACTCGAACAAGTTTTAT
GGTCCCTTTATAATGCTTTTTAATCCTTAATCCATAACTCGAAATTTCCT
TAATTCAAACAAATTTGTTTTCCCCACGCAGTGCTCGAGTTATGGGGATT
CCACTGTATTTGTATCAAACAGCATACTTTTTGATAAATAACGAGATTGC
TCACGGGAATTTTTTGACCTGCATTCCGTGCGATCGTGTTTAATCGTACA
CTCTGTGAATTCTGATGGGTATATGCAAGAAAAATCTCCTCTCCTCAGTC
TTTTGAGACTTTAAGGAGATTGGAGAGTGTCCTAATTTTACAGGCACTAG
CAGCAGGGTTTACCCTGTTTGCTGCAGTTCCACTAAAGAGTCTTGATAAT
CCCCTGAAAATATCGAGTGATCGGCTCCCGTATGTTTGAAATGATCTAAA
ATCATTTGTTTAAGAAGTTAATACCTTGACAGGATAAATAAAATTATACA
GGTCATGGCAAATAAAAGTAGGGTACATATCGTTAATCATTGTCCTTTTC
ATTCCTACAACTAGAGTAGGCGAATGGTTAAGGTGGTGGACTAGTATGTA
AAGAAAAGATACTTTTGAGAGTTCGAATCCTATACGGTGCGTTGAAGTTT
GTGTTATTTTGTCAGTATTGATCAAACTTTTTCTTTTTAATATTTTTGAA
AATTCCCGTTATAACTTTAAGAAAAAAAATTTTCTAAAGTAGTGTCACCT
CAGTGCAGTTTGACTCAAGTATAATATAGTATTTCAAAATAGATCAGAGG
TTGGTTAGCGGGTGGAGAGTCAAGAGTCAAGAGGATGACTTTCCCTTCTC
ATGAAAATCAAGTTTAAACACTTTTTTCAGAACCACAAGTGAAAAGATGC
TGCTAAAAAACGATTGACAGGTCTAAAAAATGATTGACAGGTGCCGTTTG
CTCGCGCGGGTTAGAAATTCCCGTGAGCAATCTCGTTATCTATCACAATG
TGGCCAGGAGGAGGCCATTTTAGGGGCAAAATGAATCATCTCCACTGGGA
AATGACATCAAATTGTTAACGTTATCGCTGTATTATCTCTTCACAACGTA
CTAGCCAGAACACTTTTTACCAGGTTATCGAGACAGGGGTGTTAGAGATC
GGATATTTTACCGCTTGTCCATATTTTGCGTTTTTTAAATAATTTTATTC
GATTTTACCTATTACTATTCTCATACCTTAAGGGAAGAAATTTTCACGGG
ACAAATTTTCGCGGAATTTCATTTCGTGGTTTTTTGATAAATCCGCGAAA
CTAAATTCCGTGAAACACGAATATTCTCAGGATTTAATAAATCACCTCTA
AAATTGGTCTTTTTGGGGGCAAATAGGCCATATTCGAAACAAAAAAAGTT
ATCTCAACCGCGAAATTAAATTCGCGAAACTTCAAAATTTTGAGCTGTGA
ACAGTGAAATTAAATTCCGCAAAAATTTCTTTCCTTAACAAGGTACTTCT
GATATCTCCAATATAAACAAGTAGCGTTTGAATACTTTTTACGAGCCCCC
CCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNACGAAAATCGCTAAAATTTGTCATCACGCAAAAAATAGCGAAAAAT
AGCCCAAATCACGCATCACGCCTCAAATTTTTGCCCTATCACGCATCACG
CCAAAATATTGACCACGCCAAAAAAAATCACGCCATCACGCAAGAAAAAA
GTCCCAATCACGCCATCACGCAAACCGCTGGGGGGACTCATTTACAACTA
CATATCGAATTTAATTTCTAGTTGATTTCTAACTTTTTATATGAACATTA
TTATTGTTTTCTTTTGGCATAATGAAATTTAGCAATATTTGCAATAGCCT
TGCGCCGTGTCGTTTCCTTTGATATCCGAGCATTGAAACAAAAAATTTCC
AAAACATCGATTTAAGAGTCGGCTGATTTTAACCCATATTGCTTCAGTTT
CTGAGGTTTTGATATGTCTTAAATGACTGCTCCTCTTATAGCGATTTATA
TAAAAACTGTATCTTTTATTCGAATATTTCGACTATTCGAAGTAAAATCC
CTAATAGTGATGGAATTTCTTCTGTATTATGATAATTTCGGTTTCTTTAT
TTAGGCGGACAAGAAAGAAAAGAAAGCTAAATCGAAAGTGAAAGTGAAAG
TGAAGAACGATCGTCAGACAACTAAAAGTCATCCATCAAAGCCACCCAAG
GGAAACGACGAAACAGCGAACAATGTTGTTTCTAATGTTGTGTCTTCTTC
TGCAGCACCAAAAAAAAGGTACGTGGTTGGTTGCAGGCTTTTAGATAATC
TCTGATCGAAGTTTATCTGAAAGTGGTTCTCTGACCACAACTACCTTAAG
GGAAGAAATCTTCGTGGAATTTAATTTCGCGGTTAAGAGGAATTTTTTTT
TCAAATTTGGCTTATTTTGCCCCAAAATTTTTAAATCAAGAGAATATTCT
TGTTTCGTGGAATTTGATTTCACGGATTTGTCAAAAAACTGCGAAATTTT
CTTCCCTGGTGTTTATAAAGCAACCATGTTTGAATAACGGTTATGGAGAC
TACTGTGTCATCTAAAGAGATAAATCAGTGTCGGTATGGATTTTGCAATT
AATAAAAAAGTTACAGTTTATTGTTTTCTTAACTACAGAACGATGGTACC
GATGACGAAAGAGGAATACGAAAAACAACAAAGTGTTGTCAGGAGAGTTT
ACGATCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003616-exon-sc0000030-1575043694:339181..339294 | TCONS_00003616-exon-sc0000030-1575043694:339181..339294 | Clytia hemisphaerica | exon |
| TCONS_00003616-exon-sc0000030-1575043694:330335..330406 | TCONS_00003616-exon-sc0000030-1575043694:330335..330406 | Clytia hemisphaerica | exon |
| TCONS_00003616-exon-sc0000030-1510915933:339181..339294 | TCONS_00003616-exon-sc0000030-1510915933:339181..339294 | Clytia hemisphaerica | exon |
| TCONS_00003616-exon-sc0000030-1510915933:330335..330406 | TCONS_00003616-exon-sc0000030-1510915933:330335..330406 | Clytia hemisphaerica | exon |
| TCONS_00003616-exon-sc0000030-1491911889:339181..339294 | TCONS_00003616-exon-sc0000030-1491911889:339181..339294 | Clytia hemisphaerica | exon |
| TCONS_00003616-exon-sc0000030-1491911889:330335..330406 | TCONS_00003616-exon-sc0000030-1491911889:330335..330406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:330335..339294 - |
Blast
The following BLAST results are available for this feature:
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