TCONS_00003607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003607
Unique NameTCONS_00003607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003607 ID=TCONS_00003607|Name=TCONS_00003607|organism=Clytia hemisphaerica|type=transcript|length=3464bp
TTTTGCTTATTGAGCCGAGGTGTGAAAATTTCTCATACTTTGAGGCATAC
TTAAATGGCCTCGAACTGTCTTATCATCTGATCTATCTGATAGAAAGAGA
GCGTGAAAAAAGCGTAAATTTTGATAACTAGAGAGAGcgttaaatttatt
ttcagtttcagtgtTCTACATTAGCTAAAAAATCGAAAGGTTCTGCAACG
AATAAGAGTGCGAAAACTAAGTGGCTagcaaaagataaaaatctattaac
aaaataataattataattcTTGGTGTCAATTTCATCAGGGGTTTTGTGTG
AAAATCAGAGGTGTCAAAATGGAGCCCAACTATGGTGAGAATTttgaaca
acaacaaaataaatttgaagaaaagaaaatcgGACCTACTACAGAACTAC
AAGATGATCCTTCCAAGGAGGAATACTACAtcccaccaccaccaccacca
ccaccatcaacgacccctactacaggccagTACCAACTGAATGTGATACA
GTCATCAGTAGGCCTCCCACAGCCCGTTCCACCCACGCAACAGACCCATC
CTGAATGCTCGCCTCCACCTCAAAATCTATGGAACCAACCGTCAAACAAC
TCCATCCCAAACTATTCTTATTATCCACCTACCGCACCATCTTTTTACTC
GGCACCTGGCACTGGACCTGCGACTCAAGACCTACCACCGCCACCGCAGT
TCAATAACCAATCATCAGAATATAACATGTATTATCCAGCTTTGTCGCCA
TCAACTGGACCTTCAACTTTCGGCCCCGGCGGTGCAATGCCACCAGCACA
ATATTTAGATTATGGTAAACACTGCAATGTTGACGATGATGATGAGAATC
GACCTGTGGTGACGTTGGAGAATAAATCTTTATGGCAAGAATTTCATGAA
GTTGGTACAGAAATGATCATCACTAAAACTGGAAGGAGGATGTTTCCGCC
CATAAAATTCCGTATATCAAACCTGGAACCTAAAACAAAATATATCCTCA
TCATGGACATCATTCCTGCTGATGATTGTCGTTATAAATTCAGCAGGGGA
GCGTGGTTAATTGCCGGAAAAGCCGACCCACCGATGCCTAAACGGATGTT
TATTCATCCGGACGGACCGAACACCGGGAATCAGTGGATGTCGAAAAGTA
TTTCATTCAATAAAATGAAAGTCACCAATTGTGTTCAAGGAAAGAATGGA
TATCCTATTTTGAATTCCATGCATAAATATCAACCTCGTTTCCATATCGC
GAAAGTTGCAGACTTCTATAAAATGAACATGTCCAATCTGAAGACCTTTG
TTTTCCGAGAAACCGAATTTTTGGCTGTCACAGCCTACCAGAACGAAAAG
GTGACAAAACTGAAGATCAAATACAATCCATTCGCCAAAGGTTTCCGTGA
GGATGGAGCTGCTGGTAAACGTATTTCAAGAATCGAGAATAACGAGAGTG
AtggtgaagaagaaaaatcaacttCGCATCAAAACAAGAAAACCAAATTC
TCACCAACACCCAATGAACTAAAAGGAAAACACAAATTAGACGAATCACC
AGAATCTGGAATTTCCAGTTTAAATTCAACTCCAAGCAAGATGCGTTTCA
AAGACACAATTTCACCTCCAACACATATATCGTCTTACGAAAGTCACATC
AAATCACGACGTTTCCTTTCCCCGACAGCCATGTTTACTTCATCACGTGA
TCAATTCTTCTCATCACGTGATTTTTCACCACGTGATGAGTTCCGATATC
ATTATAACCCGGCCGCATCGCCTTCCCCATCCCCGAGTTTCGAAAATTAT
CTCCCACAAAACACTTCAGCGAATTCAGTATTACCAATGGTCCTACCCGG
ATCTATTTATTCGTCCGGAAATCCTCAAAATACAGTGAATACACCCGGTA
CTGAATATAATAACGGGGCGAGTTTCCACGATCACGTAGGAGCAGGAAAA
TCGCTTAAAAAACAATTACAACTCAATACGGAACTTTTATCGAGTACTTC
TTCTCAATGGCAGAATTTTGGCAGTTATACCACACCAACTACCAATGTCG
GATCACCTTATACAcaaaacaattatttttcatCGACCCCCAATTACGGA
CGGTATGGAAGCACCCCTCTTTGTAGACACGGGCTGGCGCATTGTGCAGT
TTGCTCATATAGTAGCtctattttaaattcagctAATTTataatgattat
ttttgtttcatttcgattttcgtcttttttgttgttgtgaatatttttca
tttttgaattttttgtaaaaagaaacttttaaaaagagAGGCCAGAAATA
GGacaaacacgtttttttataagaacatccaaaatctttgaagccttggg
atgttcttaactttttgagattcaagcctaaaaatgttaattaacatatt
cttattttcgccattttttgagtgtttttgtctatttccctaagaaattc
agtattttagagtccgcaaagccctaaaatgttcttaacttgttcttaac
attttggtcatcgaaatcttaagtttttatatagtttgttcttataaaaa
accgtgtaGTAGTAATTTGCAACTTGGCGACGCTAGTCTTAAGTTATGTT
TCAAAGACTTTAACTTGTAAGCTTTTTCAATACTGTGAAAAAGTCCTGTA
AAAGTCGATGCCTCTTGTTGTTAGAATTTGCTGATGAACTTTGCAAAGAA
TATTTGCTAATAGCAAAGTTAAGTGTAAATAGGGAGTTAATGTATCAGAG
GATTTCGAGGGCAACGATAAAGTGAAGTCGatgcaaaacaaagtcgatag
ttgatgtacggctctatatcgccgttgctcacctaaacagatgACGGTAT
TTTGGGTTTTTTACCTTCGTGAGGACGGCGATTTTGgtgacatgtcaact
ttgctttatatcGTCTCCTTCGATTTACATAACTTTGCTAATAGATAAAT
CACGAACGAGGACGGACGAATTTCCACTAGCCTTTATTCACAGTAAGGAA
CTTTTTCTACAGGCTAAGTACAAAGCAAGATAGACTTACCTCGCGTAGTA
TATCCGCTTTGTAATTTTTCTATCGATACTTTAACATCGCCAATCTAATG
TTTTTAAAGGAGAGCGAATACAAGTGAGATAAATTCTGTTATGAAATATG
TACCAAAACCATGATAAATAAAGTCTTAACGAAATAAGCTtgcgtcaatt
ttttttgttgcgTTCTCATTGTATGACTTCATTTTTAATGTTATTTTTAA
TTGaactttaatttactttaaaTCTTTTGTtcataatttatttcaaaata
tacgataattttattttttatttatccATTTTGTGACCTTTTGGGCACCT
TTTTTTattaaatacaattttaaaatttacataTCACTACAAATTGAGCT
GTATAttatatctttaaaattttcaataaaatcgtttttctgaaatattt
caatTAAATTGTAC
Run BLAST on NCBI

transcript from alignment at sc0000030:264251..272257-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003607 ID=TCONS_00003607|Name=TCONS_00003607|organism=Clytia hemisphaerica|type=transcript|length=8007bp|location=Sequence derived from alignment at sc0000030:264251..272257- (Clytia hemisphaerica)
TTTTGCTTATTGAGCCGAGGTGTGAAAATTTCTCATACTTTGAGGCATAC
TTAAATGGCCTCGAACTGTCTTATCATCTGATCTATCTGATAGAAAGAGA
GCGTGAAAAAAGCGTAAATTTTGATAACTAGAGAGAGCGTTAAATTTATT
TTCAGTTTCAGTGTTCTACATTAGCTAAAAAATCGAAAGGTTCTGCAACG
AATAAGAGTGCGAAAACTAAGTGGCTAGCAAAAGATAAAAATCTATTAAC
AAAATAATAATTATAATTCTTGGTGTCAATTTCATCAGGGGTTTTGTGTG
AAAATCAGAGGTGTCAAAATGGAGCCCAACTATGGTGAGAATTTTGAACA
ACAACAAAATAAATTTGAAGAAAAGAAAATCGGACCTACTACAGAACTAC
AAGATGATCCTTCCAAGGAGGAATACTACATCCCACCACCACCACCACCA
CCACCATCAACGACCCCTACTACAGGCCAGTACCAACTGAATGTGATACA
GTCATCAGTAGGCCTCCCACAGCCCGTTCCACCCACGCAACAGACCCATC
CTGAATGCTCGCCTCCACCTCAAAATCTATGGAACCAACCGTCAAACAAC
TCCATCCCAAACTATTCTTATTATCCACCTACCGCACCATCTTTTTACTC
GGCACCTGGCACTGGACCTGCGACTCAAGACCTACCACCGCCACCGCAGT
TCAATAACCAATCATCAGAATATAACATGTATTATCCAGGTACACTATTT
TTTTAATAAGAACAAACTATATAAGAACATAAGGCTTCGATGGAATATAT
GAATGTTAAGAACATGTTAAGAACATTTTTAGGCCTAAAACTCAAAAAGT
TAAGAACATCCTAAGGCTTCAAAAATTTTGGATGTTCTTGTAAAAAAAGT
GTACCTGGATAATTGATTCTATCATTTTAGCCTCAAATAGTTCTTTTTTA
GTTTTTACCTTATTATTAATCGTCGCTTCGTTTCATATTCCAACTCCTTT
TCGTACATTTCTTAGTTATTTAGGGAAAAAAACGTGTAATGATACTGTTC
CAGCCTTACTTTGTACTGACATTCACTTTTCAACTGATTTCATTCTTTTT
TGGAATATTATACCGAAAGTTAATTTTTTAATTTTTTTATATATCCAGCT
TTGTCGCCATCAACTGGACCTTCAACTTTCGGCCCCGGCGGTGCAATGCC
ACCAGCACAATATTTAGATTACGGTAAACANAGCTTTGTCGCCATCAACT
GGACCTTCAACTTTCGGCCCCGGCGGTGCAATGCCACCAGCACAATATTT
AGATTATGGTAAACACTGCAATGTTGACGATGATGATGAGAATCGACCTG
TGGTGACGTTGGAGAATAAATCTTTATGGCAAGAATTTCATGAAGTTGGT
ACAGAAATGATCATCACTAAAACTGGAAGGTAGCTATTGCTTTTTTGAAA
GAACATCCTAAACTTTTGAAGCCTTTAGATGTTCTTAACTTTTGATTTTT
CGGTCTAAAATTGTTCTTAATTTGACCATTTTAAAAGTCTTTTTGTTTGC
AATTTCCCAAGAAATCGGGTGTCTTAGAGTCTGTAAAGCCTTAAAATATT
CTTAACTTGTTCTTAATATTTTGGCCATCGAAGCCTTATGTTCTTATGTA
GTTTGTTCTTGTAAAAAACGTGTATACACTTTGAGGTACCTATAAATTCG
CAATTTATCTCCAGGATGGTAACGATAGAATCACGCTTTCTATTGAAATT
AATAGAAATTTGCATTTCTTTTGTGAGAGATTATTAGTCATCTTTGTTTA
GATAATGACATGAAAATTTGCTTTAAAAATCAACATGTGTTTTCTATAGC
GAAAGTGTGGTGTTTGTCTCGAGTGCTTTTAGAAAGAAAATTTTCCTTCG
ATATGCTTTTTCATCTGAATCGTGAATAATTACCGATAATTATCTCTAAA
TTAATTANAATATGCTTTTTCATCTGAATCATGAATAATTACCGATAATT
ATCTCTGAATTAATTATTTTTATTGTTGTCTGAAAAATTTTATTTAATCG
CAACATGCCGTACATTAGATACGATCAGTTCTTTTGGCTTTTTCTCTTAT
TTCTCTTTTCCAATTTTCCGCGAGGAGTTTAAACTATCCGACAATAGGGA
CCGCTAAACGTGTTAAAGCTTTTGTCTTGGATACAGCAAATTGTTTTGAT
TGGAATTTCAAAGAAAAAACTTACTGCCAAGAATTTTTCTAATGACAATT
CAAAAAAATTTAAAAGATTGATTCTTTTTCGAAAAAATATCTTCCTAAAA
TTAATTAAAAAAGGTTTTCCTTTAAATCATTTTAAATCACTTGTGGGTTT
TCTTTTAAAACTTCATTGTGAAATAAAAATGATTTTAAACCGTAAAAAAT
CCAACCTGTTCTTTAGAATTAAAAGATAAAAGATTTCAAAAGAATTTTAA
CACTATTTTTATCTACTCAAATCCTATTGACTTAATTAATTGACTTAGAA
ATAAATCATACCATAGTGTTTATAAACTGTCCTTAATCATGGTGATTTTA
ACTTGATTATTGTGATTGATATTAAATTGTTTCAATAAAAAAGTATGATA
AGAAAGAATGACTTGAGGGGGGGTTTTGGTCGGATTAAGCACGAGGAAGT
GTAATCTCTGTTCAATCGATCTTTCAGTTGTCTTAATTACATCCCCTTCT
CACAGACCCACTGGGACCTAGATTATTTTTATTATTTTTATATTAACCCG
TATCTATTATTTTAACTCCCACTAGCTGAAAAAGTCTTACCGGGTCTGTG
AGAAGGGGATTTAATTGTTCTCAAAATCACCGTTCTCGATGTTTTTTTTG
TTTTTTTTTTGCTCGAAAGTTTTTTGTTCTTGTATACTTTTTTCTTATAG
GCCATTTCACAGTCGAAATGAATCATGGGTAATCATGACCACCGCGCTGT
AATAACAACTTTCTGTTGGTCTAAATTTTTGGATGTTTTTGGGTCCAGCC
AACGGGAAGCCGTTATGGAGGTGCAATTAGTCCTGATTACCCATGATTCA
TTTCGACTGTGAAGGAGAAACATTTGTGGTGACCGCAATCTTGATTGTAT
CTTTTCTAGGAGGATGTTTCCGCCCATAAAATTCCGTATATCAAACCTGG
AACCTAAAACAAAATATATCCTCATCATGGACATCATTCCTGCTGATGAT
TGTCGTTATAAATTCAGCAGGGGAGCGTGGTTAATTGCCGGAAAAGCCGA
CCCACCGATGCCTAAACGGATGTTTATTCATCCGGACGGACCGAACACCG
GGAATCAGTGGATGTCGAAAAGTATTTCATTCAATAAAATGAAAGTCACC
AATTGTGTTCAAGGAAAGAATGGATATGTAAGATTTCTCATTTTAATTCA
TTGTTCTTAAATCTAATAGGCCTTTCCATAAATTATTTAAAGTTCAACGA
CTACCTCGTTTTGAAACCATTACCAAGGTGATTAATTCCCTTGAGTCTTC
AAATGATACCTTTATGAATAAAGTGAAATTCTTATGGACTTCTCTTGGAA
TCAATAACCATAGCAATATTTTGAAAACGAGGTAAGCGTTGCTCGTGACG
TAATTTATGAAAAGGTCTATTGTTAAAAACTAGTTTTTCATGGAGGCAGA
TTTTCTTATGACATCATTTTAACCCGCGATAGCTGACTGTGCCATTTTAT
TCTTACTAGCCTATCTATAGCTTTGGTTGAAAAATTCTCACTATACAGCT
AGATAATGCTATGCTGATCTTTCCTGTGAAGAATACATATATTATTTCCC
AAGAGTATTCCTTTAGCTGAAATAATTCTCACAGATAATTCTCACAGATG
TTTTCATTGTTCACGTTTAAGAATGAAAATTTTAAAGTTTTTCTGTCGAT
TAACATTTTACTTCCGTCACAGTGTGTACAACAAATTCTTCATGTGACGT
TTGTTTTCGATATCTGAAACTGTAAATTATGGTGTAAAGAAAAGCTTTCA
GCATTTTAAGTTTATCTAACAAAATCAGAAACCATGGATCAATCGCAGGC
GTCGAAAAGTGAAAAATCATTTGCCTCAATTTGCCTATAAAAATACAAAA
TGTGTCCCAGAAAAAACGGACTAGACAATTTTTTGCATAAAGTAAAATCC
TCAAAAAATGATTGAAATAAGATTTAAAATTCTCTGTTCAAGTTCAATCA
AAAGATATCCTCAAGATGATTAAATAGGTTTTTGAGATATTAAGTATACA
AGTCGTAAAATTTCGCGGAGGATTTTATTTTCGATTAAAATTTGTCCGCT
TTTTTCGGACACTCTGTAGATTTATGTTTCAATTTTTCAGTTTTAAAATC
AGAATTCAACTTAACCCAGTTCCTTTTCTCTTCTTTTTTCAGCCTATTTT
GAATTCCATGCATAAATATCAACCTCGTTTCCATATCGCGAAAGTTGCAG
ACTTCTATAAAATGAACATGTCCAATCTGAAGACCTTTGTTTTCCGAGAA
ACCGAATTTTTGGCTGTCACAGCCTACCAGAACGAAAAGGTTTGAATAGA
TTCTCTGTTATTTTACTTGTACCGTCGAGTATGTATTATATACACTTCTT
TTTCTTATAAGAACAATGAGCCTCTAAATCGCCAAAAAATAGAAATTTAA
ACAATTTAGAGATCAAAGTAGTAAAGATTTGGTATAAAGCCTAAAATATC
TCAATCACACCCTATAACTAAGAACAGGATAAGAACAATTTAAGGCTCAA
AGTGCCAAATATGAGAACAACCGAGCCTCATCAAAAATCTACCAGTTCTA
ATAAAAAAAGTGTTTATCAAACTGTGAATCAAACTGTGTTATCAAACAGT
TTATTCTTTTTTTATAAGAACCAGTAAATTTTTGTTTCTATCATGTTCGC
TTATTTCTAGGCGAAACACCTTGTCTGATCCTTTTGTATAAAATTTAGCT
AGAATTGTTCTTATTTTTTGGTACATTTTGCCCTCATCATCCTGATAAGA
ATATTATTGTAAAAATAAATATTTTAAATCTTACGGGTTATAAAGAGTAA
AAGAGCCTACACGTTCTTTTTATAAGAACATCCAAAATTTTTGAAGCCTT
CGGATGTTCTTAACATTTTGAGTTTTAAGCCTAAAAATGTTCTTAACATA
TTCTTATTTATACTATTTTGTGAGTATTTTTAACCATTTTTTTAAGAAAT
CGGGTGTTTTTAGTTGTTGATCTTAATATTTTGGCCATCGAAGCCTTATG
TTCTTATATAGTTTGTTCTTAAAAGAACGTGTACTCAAAATAGATTAAAA
AATGAGGTTTTCCCTTGCCAAAGTAAAAGAGCCTTTAATTCTTTCAAAAC
AATATGAAGAAACTGTACGTAAGAACATTTTTGATAACACTTCCCTTCAG
GTGACAAAACTGAAGATCAAATACAATCCATTCGCCAAAGGTTTCCGTGA
GGATGGAGCTGCTGGTAAACGTATTTCAAGGTATCTATCTAACTTTGTTT
TGAAGTTTTTAGTTTTACATAAGTGTTCCTGTTGCATATCAGATACATGT
TTTATATCATTGCGGTGTCTCCTATTGTTATATTGTGTTCGATTTTGTGC
TGAATAAACCAATATTGCTCCACAATGTGAGAAAGATTGAAGTTTAAATT
GATGACTAAGCAAATGATATCAACTTTGATCAGTATACATATATTTTAAA
TCACTTTTCTTCAGAATCGAGAATAACGAGAGTGATGGTGAAGAAGAAAA
ATCAACTTCGCATCAAAACAAGAAAACCAAATTCTCACCAACACCCAATG
AACTAAAAGGAAAACACAAATTAGACGGTATGTATGCCTAATATTTTCAT
TTAGAGGATTACCACATGAAAAGTCCCTGAAAATTGTTGAAATTTGTAAA
GCAAAAATAACAACGTTGGTTATTCATAATATTCATTACTTTCATTACTT
ATTATTCGACGGAAAGGCCCACATCATGAAATTGAAAGTGGGGGGGGGGG
CAATGAATATAAAGTCTATTGAGGTGCAACCAAGAATTTTCAGATTGCAA
AAAATTAGCTTATTTTACCATATTTTATCTCTATAGAATCACCAGAATCT
GGAATTTCCAGTTTAAATTCAACTCCAAGCAAGATGCGTTTCAAAGACAC
AATTTCACCTCCAACACATATATCGTCTTACGAAAGTCACATCAAATCAC
GACGTTTCCTTTCCCCGACAGCCATGTTTACTTCATCACGTGATCAATTC
TTCTCATCACGTGATTTTTCACCACGTGATGAGTTCCGATATCATTATAA
CCCGGCCGCATCGCCTTCCCCATCCCCGAGTTTCGAAAATTATCTCCCAC
AAAACACTTCAGCGAATTCAGTATTACCAATGGTCCTACCCGGATCTATT
TATTCGTCCGGAAATCCTCAAAATACAGTGAATACACCCGGTACTGAATA
TAATAACGGGGCGAGTTTCCACGATCACGTAGGAGCAGGAAAATCGCTTA
AAAAACAATTACAACTCAATACGGAACTTTTATCGAGTACTTCTTCTCAA
TGGCAGAATTTTGGCAGTTATACCACACCAACTACCAATGTCGGATCACC
TTATACACAAAACAATTATTTTTCATCGACCCCCAATTACGGACGGTATG
GAAGCACCCCTCTTTGTAGACACGGGCTGGCGCATTGTGCAGTTTGCTCA
TATAGTAGCTCTATTTTAAATTCAGCTAATTTATAATGATTATTTTTGTT
TCATTTCGATTTTCGTCTTTTTTGTTGTTGTGAATATTTTTCATTTTTGA
ATTTTTTGTAAAAAGAAACTTTTAAAAAGAGAGGCCAGAAATAGGACAAA
CACGTTTTTTTATAAGAACATCCAAAATCTTTGAAGCCTTGGGATGTTCT
TAACTTTTTGAGATTCAAGCCTAAAAATGTTAATTAACATATTCTTATTT
TCGCCATTTTTTGAGTGTTTTTGTCTATTTCCCTAAGAAATTCAGTATTT
TAGAGTCCGCAAAGCCCTAAAATGTTCTTAACTTGTTCTTAACATTTTGG
TCATCGAAATCTTAAGTTTTTATATAGTTTGTTCTTATAAAAAACCGTGT
AGTAGTAATTTGCAACTTGGCGACGCTAGTCTTAAGTTATGTTTCAAAGA
CTTTAACTTGTAAGCTTTTTCAATACTGTGAAAAAGTCCTGTAAAAGTCG
ATGCCTCTTGTTGTTAGAATTTGCTGATGAACTTTGCAAAGAATATTTGC
TAATAGCAAAGTTAAGTGTAAATAGGGAGTTAATGTATCAGAGGATTTCG
AGGGCAACGATAAAGTGAAGTCGATGCAAAACAAAGTCGATAGTTGATGT
ACGGCTCTATATCGCCGTTGCTCACCTAAACAGATGACGGTATTTTGGGT
TTTTTACCTTCGTGAGGACGGCGATTTTGGTGACATGTCAACTTTGCTTT
ATATCGTCTCCTTCGATTTACATAACTTTGCTAATAGATAAATCACGAAC
GAGGACGGACGAATTTCCACTAGCCTTTATTCACAGTAAGGAACTTTTTC
TACAGGCTAAGTACAAAGCAAGATAGACTTACCTCGCGTAGTATATCCGC
TTTGTAATTTTTCTATCGATACTTTAACATCGCCAATCTAATGTTTTTAA
AGGAGAGCGAATACAAGTGAGATAAATTCTGTTATGAAATATGTACCAAA
ACCATGATAAATAAAGTCTTAACGAAATAAGCTTGCGTCAATTTTTTTTG
TTGCGTTCTCATTGTATGACTTCATTTTTAATGTTATTTTTAATTGAACT
TTAATTTACTTTAAATCTTTTGTTCATAATTTATTTCAAAATATACGATA
ATTTTATTTTTTATTTATCCATTTTGTGACCTTTTGGGCACCTTTTTTTA
TTAAATACAATTTTAAAATTTACATATCACTACAAATTGAGCTGTATATT
ATATCTTTAAAATTTTCAATAAAATCGTTTTTCTGAAATATTTCAATTAA
ATTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002012XLOC_002012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003607-exon-sc0000030-1575043694:271519..272257TCONS_00003607-exon-sc0000030-1575043694:271519..272257Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1575043694:270829..271024TCONS_00003607-exon-sc0000030-1575043694:270829..271024Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1575043694:268881..269148TCONS_00003607-exon-sc0000030-1575043694:268881..269148Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1575043694:267719..267865TCONS_00003607-exon-sc0000030-1575043694:267719..267865Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1575043694:266778..266857TCONS_00003607-exon-sc0000030-1575043694:266778..266857Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1575043694:266431..266543TCONS_00003607-exon-sc0000030-1575043694:266431..266543Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1575043694:264251..266171TCONS_00003607-exon-sc0000030-1575043694:264251..266171Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1510915933:271519..272257TCONS_00003607-exon-sc0000030-1510915933:271519..272257Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1510915933:270829..271024TCONS_00003607-exon-sc0000030-1510915933:270829..271024Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1510915933:268881..269148TCONS_00003607-exon-sc0000030-1510915933:268881..269148Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1510915933:267719..267865TCONS_00003607-exon-sc0000030-1510915933:267719..267865Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1510915933:266778..266857TCONS_00003607-exon-sc0000030-1510915933:266778..266857Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1510915933:266431..266543TCONS_00003607-exon-sc0000030-1510915933:266431..266543Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1510915933:264251..266171TCONS_00003607-exon-sc0000030-1510915933:264251..266171Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1491911889:271519..272257TCONS_00003607-exon-sc0000030-1491911889:271519..272257Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1491911889:270829..271024TCONS_00003607-exon-sc0000030-1491911889:270829..271024Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1491911889:268881..269148TCONS_00003607-exon-sc0000030-1491911889:268881..269148Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1491911889:267719..267865TCONS_00003607-exon-sc0000030-1491911889:267719..267865Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1491911889:266778..266857TCONS_00003607-exon-sc0000030-1491911889:266778..266857Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1491911889:266431..266543TCONS_00003607-exon-sc0000030-1491911889:266431..266543Clytia hemisphaericaexon
TCONS_00003607-exon-sc0000030-1491911889:264251..266171TCONS_00003607-exon-sc0000030-1491911889:264251..266171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:264251..272257 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.30736	2.08435	1.54372e-05	8.10847e-05	0.486247	0.070289	0.000168018	1.8097	0	1.86574e-09	1.14448e-08	0.0965159	5.31672e-08	0.0833584	0	0	0.380502	0.235652	0	0	0	2.17487e-07	0	0	0	0
Blast
[Close]
BLAST of TCONS_00003607 vs. Swiss-Prot (Human)
Match: TBX2 (T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 6.555e-83
Identity = 128/214 (59.81%), Postives = 164/214 (76.64%), Query Frame = 1 
Query:  790 PPAQYLDYGKHCNVDDDDENRPVVTLENKSLWQEFHEVGTEMIITKTGRRMFPPIKFRISNLEPKTKYILIMDIIPADDCRYKFSRGAWLIAGKADPPMPKRMFIHPDGPNTGNQWMSKSISFNKMKVTNCVQGKNGYPILNSMHKYQPRFHIAKVADFYKMNMSNLKTFVFRETEFLAVTAYQNEKVTKLKIKYNPFAKGFREDGAAGKRISR 1431
            PPA +L   K    +D+ E+ P VTLE K LW +FH++GTEM+ITK+GRRMFPP K R+S L+ K KYIL+MDI+ ADDCRYKF    W++AGKADP MPKRM+IHPD P TG QWM+K ++F+K+K+TN +  K+G+ ILNSMHKYQPRFHI +  D  K+  S  +T+VF ET+F+AVTAYQN+K+T+LKI  NPFAKGFR+ G  G+R  R
Sbjct:   84 PPAAHLRSLKSLEPEDEVEDDPKVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTG-NGRREKR 296
The following BLAST results are available for this feature:
BLAST of TCONS_00003607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBX26.555e-8359.81T-box transcription factor TBX2 OS=Homo sapiens GN... [more]
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