TCONS_00003606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003606
Unique NameTCONS_00003606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003606 ID=TCONS_00003606|Name=TCONS_00003606|organism=Clytia hemisphaerica|type=transcript|length=3428bp
ACTTTGAGGCATACTTAAATGGCCTCGAACTGTCTTATCATCTGATCTAT
CTGATAGAAAGAGAGCGTGAAAAAAGCGTAAATTTTGATAACTAGAGAGA
GcgttaaatttattttcagtttcagtgtTCTACATTAGCTAAAAAATCGA
AAGGTTCTGCAACGAATAAGAGTGCGAAAACTAAGTGGCTagcaaaagat
aaaaatctattaacaaaataataattataattcTTGGTGTCAATTTCATC
AGGGGTTTTGTGTGAAAATCAGAGGTGTCAAAATGGAGCCCAACTATGGT
GAGAATTttgaacaacaacaaaataaatttgaagaaaagaaaatcgGACC
TACTACAGAACTACAAGATGATCCTTCCAAGGAGGAATACTACAtcccac
caccaccaccaccaccaccatcaacgacccctactacaggccagTACCAA
CTGAATGTGATACAGTCATCAGTAGGCCTCCCACAGCCCGTTCCACCCAC
GCAACAGACCCATCCTGAATGCTCGCCTCCACCTCAAAATCTATGGAACC
AACCGTCAAACAACTCCATCCCAAACTATTCTTATTATCCACCTACCGCA
CCATCTTTTTACTCGGCACCTGGCACTGGACCTGCGACTCAAGACCTACC
ACCGCCACCGCAGTTCAATAACCAATCATCAGAATATAACATGTATTATC
CAGCTTTGTCGCCATCAACTGGACCTTCAACTTTCGGCCCCGGCGGTGCA
ATGCCACCAGCACAATATTTAGATTACGGTAAACACTGCAATGTTGACGA
TGATGATGAGAATCGACCTGTGGTGACGTTGGAGAATAAATCTTTATGGC
AAGAATTTCATGAAGTTGGTACAGAAATGATCATCACTAAAACTGGAAGG
AGGATGTTTCCGCCCATAAAATTCCGTATATCAAACCTGGAACCTAAAAC
AAAATATATCCTCATCATGGACATCATTCCTGCTGATGATTGTCGTTATA
AATTCAGCAGGGGAGCGTGGTTAATTGCCGGAAAAGCCGACCCACCGATG
CCTAAACGGATGTTTATTCATCCGGACGGACCGAACACCGGGAATCAGTG
GATGTCGAAAAGTATTTCATTCAATAAAATGAAAGTCACCAATTGTGTTC
AAGGAAAGAATGGATATCCTATTTTGAATTCCATGCATAAATATCAACCT
CGTTTCCATATCGCGAAAGTTGCAGACTTCTATAAAATGAACATGTCCAA
TCTGAAGACCTTTGTTTTCCGAGAAACCGAATTTTTGGCTGTCACAGCCT
ACCAGAACGAAAAGGTGACAAAACTGAAGATCAAATACAATCCATTCGCC
AAAGGTTTCCGTGAGGATGGAGCTGCTGGTAAACGTATTTCAAGAATCGA
GAATAACGAGAGTGAtggtgaagaagaaaaatcaacttCGCATCAAAACA
AGAAAACCAAATTCTCACCAACACCCAATGAACTAAAAGGAAAACACAAA
TTAGACGAATCACCAGAATCTGGAATTTCCAGTTTAAATTCAACTCCAAG
CAAGATGCGTTTCAAAGACACAATTTCACCTCCAACACATATATCGTCTT
ACGAAAGTCACATCAAATCACGACGTTTCCTTTCCCCGACAGCCATGTTT
ACTTCATCACGTGATCAATTCTTCTCATCACGTGATTTTTCACCACGTGA
TGAGTTCCGATATCATTATAACCCGGCCGCATCGCCTTCCCCATCCCCGA
GTTTCGAAAATTATCTCCCACAAAACACTTCAGCGAATTCAGTATTACCA
ATGGTCCTACCCGGATCTATTTATTCGTCCGGAAATCCTCAAAATACAGT
GAATACACCCGGTACTGAATATAATAACGGGGCGAGTTTCCACGATCACG
TAGGAGCAGGAAAATCGCTTAAAAAACAATTACAACTCAATACGGAACTT
TTATCGAGTACTTCTTCTCAATGGCAGAATTTTGGCAGTTATACCACACC
AACTACCAATGTCGGATCACCTTATACAcaaaacaattatttttcatCGA
CCCCCAATTACGGACGGTATGGAAGCACCCCTCTTTGTAGACACGGGCTG
GCGCATTGTGCAGTTTGCTCATATAGTAGCtctattttaaattcagctAA
TTTataatgattatttttgtttcatttcgattttcgtcttttttgttgtt
gtgaatatttttcatttttgaattttttgtaaaaagaaacttttaaaaag
agAGGCCAGAAATAGGacaaacacgtttttttataagaacatccaaaatc
tttgaagccttgggatgttcttaactttttgagattcaagcctaaaaatg
ttaattaacatattcttattttcgccattttttgagtgtttttgtctatt
tccctaagaaattcagtattttagagtccgcaaagccctaaaatgttctt
aacttgttcttaacattttggtcatcgaaatcttaagtttttatatagtt
tgttcttataaaaaaccgtgtaGTAGTAATTTGCAACTTGGCGACGCTAG
TCTTAAGTTATGTTTCAAAGACTTTAACTTGTAAGCTTTTTCAATACTGT
GAAAAAGTCCTGTAAAAGTCGATGCCTCTTGTTGTTAGAATTTGCTGATG
AACTTTGCAAAGAATATTTGCTAATAGCAAAGTTAAGTGTAAATAGGGAG
TTAATGTATCAGAGGATTTCGAGGGCAACGATAAAGTGAAGTCGatgcaa
aacaaagtcgatagttgatgtacggctctatatcgccgttgctcacctaa
acagatgACGGTATTTTGGGTTTTTTACCTTCGTGAGGACGGCGATTTTG
gtgacatgtcaactttgctttatatcGTCTCCTTCGATTTACATAACTTT
GCTAATAGATAAATCACGAACGAGGACGGACGAATTTCCACTAGCCTTTA
TTCACAGTAAGGAACTTTTTCTACAGGCTAAGTACAAAGCAAGATAGACT
TACCTCGCGTAGTATATCCGCTTTGTAATTTTTCTATCGATACTTTAACA
TCGCCAATCTAATGTTTTTAAAGGAGAGCGAATACAAGTGAGATAAATTC
TGTTATGAAATATGTACCAAAACCATGATAAATAAAGTCTTAACGAAATA
AGCTtgcgtcaattttttttgttgcgTTCTCATTGTATGACTTCATTTTT
AATGTTATTTTTAATTGaactttaatttactttaaaTCTTTTGTtcataa
tttatttcaaaatatacgataattttattttttatttatccATTTTGTGA
CCTTTTGGGCACCTTTTTTTattaaatacaattttaaaatttacataTCA
CTACAAATTGAGCTGTATAttatatctttaaaattttcaataaaatcgtt
tttctgaaatatttcaatTAAATTGTAC
Run BLAST on NCBI

transcript from alignment at sc0000030:264251..272221-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003606 ID=TCONS_00003606|Name=TCONS_00003606|organism=Clytia hemisphaerica|type=transcript|length=7971bp|location=Sequence derived from alignment at sc0000030:264251..272221- (Clytia hemisphaerica)
ACTTTGAGGCATACTTAAATGGCCTCGAACTGTCTTATCATCTGATCTAT
CTGATAGAAAGAGAGCGTGAAAAAAGCGTAAATTTTGATAACTAGAGAGA
GCGTTAAATTTATTTTCAGTTTCAGTGTTCTACATTAGCTAAAAAATCGA
AAGGTTCTGCAACGAATAAGAGTGCGAAAACTAAGTGGCTAGCAAAAGAT
AAAAATCTATTAACAAAATAATAATTATAATTCTTGGTGTCAATTTCATC
AGGGGTTTTGTGTGAAAATCAGAGGTGTCAAAATGGAGCCCAACTATGGT
GAGAATTTTGAACAACAACAAAATAAATTTGAAGAAAAGAAAATCGGACC
TACTACAGAACTACAAGATGATCCTTCCAAGGAGGAATACTACATCCCAC
CACCACCACCACCACCACCATCAACGACCCCTACTACAGGCCAGTACCAA
CTGAATGTGATACAGTCATCAGTAGGCCTCCCACAGCCCGTTCCACCCAC
GCAACAGACCCATCCTGAATGCTCGCCTCCACCTCAAAATCTATGGAACC
AACCGTCAAACAACTCCATCCCAAACTATTCTTATTATCCACCTACCGCA
CCATCTTTTTACTCGGCACCTGGCACTGGACCTGCGACTCAAGACCTACC
ACCGCCACCGCAGTTCAATAACCAATCATCAGAATATAACATGTATTATC
CAGGTACACTATTTTTTTAATAAGAACAAACTATATAAGAACATAAGGCT
TCGATGGAATATATGAATGTTAAGAACATGTTAAGAACATTTTTAGGCCT
AAAACTCAAAAAGTTAAGAACATCCTAAGGCTTCAAAAATTTTGGATGTT
CTTGTAAAAAAAGTGTACCTGGATAATTGATTCTATCATTTTAGCCTCAA
ATAGTTCTTTTTTAGTTTTTACCTTATTATTAATCGTCGCTTCGTTTCAT
ATTCCAACTCCTTTTCGTACATTTCTTAGTTATTTAGGGAAAAAAACGTG
TAATGATACTGTTCCAGCCTTACTTTGTACTGACATTCACTTTTCAACTG
ATTTCATTCTTTTTTGGAATATTATACCGAAAGTTAATTTTTTAATTTTT
TTATATATCCAGCTTTGTCGCCATCAACTGGACCTTCAACTTTCGGCCCC
GGCGGTGCAATGCCACCAGCACAATATTTAGATTACGGTAAACANAGCTT
TGTCGCCATCAACTGGACCTTCAACTTTCGGCCCCGGCGGTGCAATGCCA
CCAGCACAATATTTAGATTATGGTAAACACTGCAATGTTGACGATGATGA
TGAGAATCGACCTGTGGTGACGTTGGAGAATAAATCTTTATGGCAAGAAT
TTCATGAAGTTGGTACAGAAATGATCATCACTAAAACTGGAAGGTAGCTA
TTGCTTTTTTGAAAGAACATCCTAAACTTTTGAAGCCTTTAGATGTTCTT
AACTTTTGATTTTTCGGTCTAAAATTGTTCTTAATTTGACCATTTTAAAA
GTCTTTTTGTTTGCAATTTCCCAAGAAATCGGGTGTCTTAGAGTCTGTAA
AGCCTTAAAATATTCTTAACTTGTTCTTAATATTTTGGCCATCGAAGCCT
TATGTTCTTATGTAGTTTGTTCTTGTAAAAAACGTGTATACACTTTGAGG
TACCTATAAATTCGCAATTTATCTCCAGGATGGTAACGATAGAATCACGC
TTTCTATTGAAATTAATAGAAATTTGCATTTCTTTTGTGAGAGATTATTA
GTCATCTTTGTTTAGATAATGACATGAAAATTTGCTTTAAAAATCAACAT
GTGTTTTCTATAGCGAAAGTGTGGTGTTTGTCTCGAGTGCTTTTAGAAAG
AAAATTTTCCTTCGATATGCTTTTTCATCTGAATCGTGAATAATTACCGA
TAATTATCTCTAAATTAATTANAATATGCTTTTTCATCTGAATCATGAAT
AATTACCGATAATTATCTCTGAATTAATTATTTTTATTGTTGTCTGAAAA
ATTTTATTTAATCGCAACATGCCGTACATTAGATACGATCAGTTCTTTTG
GCTTTTTCTCTTATTTCTCTTTTCCAATTTTCCGCGAGGAGTTTAAACTA
TCCGACAATAGGGACCGCTAAACGTGTTAAAGCTTTTGTCTTGGATACAG
CAAATTGTTTTGATTGGAATTTCAAAGAAAAAACTTACTGCCAAGAATTT
TTCTAATGACAATTCAAAAAAATTTAAAAGATTGATTCTTTTTCGAAAAA
ATATCTTCCTAAAATTAATTAAAAAAGGTTTTCCTTTAAATCATTTTAAA
TCACTTGTGGGTTTTCTTTTAAAACTTCATTGTGAAATAAAAATGATTTT
AAACCGTAAAAAATCCAACCTGTTCTTTAGAATTAAAAGATAAAAGATTT
CAAAAGAATTTTAACACTATTTTTATCTACTCAAATCCTATTGACTTAAT
TAATTGACTTAGAAATAAATCATACCATAGTGTTTATAAACTGTCCTTAA
TCATGGTGATTTTAACTTGATTATTGTGATTGATATTAAATTGTTTCAAT
AAAAAAGTATGATAAGAAAGAATGACTTGAGGGGGGGTTTTGGTCGGATT
AAGCACGAGGAAGTGTAATCTCTGTTCAATCGATCTTTCAGTTGTCTTAA
TTACATCCCCTTCTCACAGACCCACTGGGACCTAGATTATTTTTATTATT
TTTATATTAACCCGTATCTATTATTTTAACTCCCACTAGCTGAAAAAGTC
TTACCGGGTCTGTGAGAAGGGGATTTAATTGTTCTCAAAATCACCGTTCT
CGATGTTTTTTTTGTTTTTTTTTTGCTCGAAAGTTTTTTGTTCTTGTATA
CTTTTTTCTTATAGGCCATTTCACAGTCGAAATGAATCATGGGTAATCAT
GACCACCGCGCTGTAATAACAACTTTCTGTTGGTCTAAATTTTTGGATGT
TTTTGGGTCCAGCCAACGGGAAGCCGTTATGGAGGTGCAATTAGTCCTGA
TTACCCATGATTCATTTCGACTGTGAAGGAGAAACATTTGTGGTGACCGC
AATCTTGATTGTATCTTTTCTAGGAGGATGTTTCCGCCCATAAAATTCCG
TATATCAAACCTGGAACCTAAAACAAAATATATCCTCATCATGGACATCA
TTCCTGCTGATGATTGTCGTTATAAATTCAGCAGGGGAGCGTGGTTAATT
GCCGGAAAAGCCGACCCACCGATGCCTAAACGGATGTTTATTCATCCGGA
CGGACCGAACACCGGGAATCAGTGGATGTCGAAAAGTATTTCATTCAATA
AAATGAAAGTCACCAATTGTGTTCAAGGAAAGAATGGATATGTAAGATTT
CTCATTTTAATTCATTGTTCTTAAATCTAATAGGCCTTTCCATAAATTAT
TTAAAGTTCAACGACTACCTCGTTTTGAAACCATTACCAAGGTGATTAAT
TCCCTTGAGTCTTCAAATGATACCTTTATGAATAAAGTGAAATTCTTATG
GACTTCTCTTGGAATCAATAACCATAGCAATATTTTGAAAACGAGGTAAG
CGTTGCTCGTGACGTAATTTATGAAAAGGTCTATTGTTAAAAACTAGTTT
TTCATGGAGGCAGATTTTCTTATGACATCATTTTAACCCGCGATAGCTGA
CTGTGCCATTTTATTCTTACTAGCCTATCTATAGCTTTGGTTGAAAAATT
CTCACTATACAGCTAGATAATGCTATGCTGATCTTTCCTGTGAAGAATAC
ATATATTATTTCCCAAGAGTATTCCTTTAGCTGAAATAATTCTCACAGAT
AATTCTCACAGATGTTTTCATTGTTCACGTTTAAGAATGAAAATTTTAAA
GTTTTTCTGTCGATTAACATTTTACTTCCGTCACAGTGTGTACAACAAAT
TCTTCATGTGACGTTTGTTTTCGATATCTGAAACTGTAAATTATGGTGTA
AAGAAAAGCTTTCAGCATTTTAAGTTTATCTAACAAAATCAGAAACCATG
GATCAATCGCAGGCGTCGAAAAGTGAAAAATCATTTGCCTCAATTTGCCT
ATAAAAATACAAAATGTGTCCCAGAAAAAACGGACTAGACAATTTTTTGC
ATAAAGTAAAATCCTCAAAAAATGATTGAAATAAGATTTAAAATTCTCTG
TTCAAGTTCAATCAAAAGATATCCTCAAGATGATTAAATAGGTTTTTGAG
ATATTAAGTATACAAGTCGTAAAATTTCGCGGAGGATTTTATTTTCGATT
AAAATTTGTCCGCTTTTTTCGGACACTCTGTAGATTTATGTTTCAATTTT
TCAGTTTTAAAATCAGAATTCAACTTAACCCAGTTCCTTTTCTCTTCTTT
TTTCAGCCTATTTTGAATTCCATGCATAAATATCAACCTCGTTTCCATAT
CGCGAAAGTTGCAGACTTCTATAAAATGAACATGTCCAATCTGAAGACCT
TTGTTTTCCGAGAAACCGAATTTTTGGCTGTCACAGCCTACCAGAACGAA
AAGGTTTGAATAGATTCTCTGTTATTTTACTTGTACCGTCGAGTATGTAT
TATATACACTTCTTTTTCTTATAAGAACAATGAGCCTCTAAATCGCCAAA
AAATAGAAATTTAAACAATTTAGAGATCAAAGTAGTAAAGATTTGGTATA
AAGCCTAAAATATCTCAATCACACCCTATAACTAAGAACAGGATAAGAAC
AATTTAAGGCTCAAAGTGCCAAATATGAGAACAACCGAGCCTCATCAAAA
ATCTACCAGTTCTAATAAAAAAAGTGTTTATCAAACTGTGAATCAAACTG
TGTTATCAAACAGTTTATTCTTTTTTTATAAGAACCAGTAAATTTTTGTT
TCTATCATGTTCGCTTATTTCTAGGCGAAACACCTTGTCTGATCCTTTTG
TATAAAATTTAGCTAGAATTGTTCTTATTTTTTGGTACATTTTGCCCTCA
TCATCCTGATAAGAATATTATTGTAAAAATAAATATTTTAAATCTTACGG
GTTATAAAGAGTAAAAGAGCCTACACGTTCTTTTTATAAGAACATCCAAA
ATTTTTGAAGCCTTCGGATGTTCTTAACATTTTGAGTTTTAAGCCTAAAA
ATGTTCTTAACATATTCTTATTTATACTATTTTGTGAGTATTTTTAACCA
TTTTTTTAAGAAATCGGGTGTTTTTAGTTGTTGATCTTAATATTTTGGCC
ATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTAAAAGAACGTGTACTC
AAAATAGATTAAAAAATGAGGTTTTCCCTTGCCAAAGTAAAAGAGCCTTT
AATTCTTTCAAAACAATATGAAGAAACTGTACGTAAGAACATTTTTGATA
ACACTTCCCTTCAGGTGACAAAACTGAAGATCAAATACAATCCATTCGCC
AAAGGTTTCCGTGAGGATGGAGCTGCTGGTAAACGTATTTCAAGGTATCT
ATCTAACTTTGTTTTGAAGTTTTTAGTTTTACATAAGTGTTCCTGTTGCA
TATCAGATACATGTTTTATATCATTGCGGTGTCTCCTATTGTTATATTGT
GTTCGATTTTGTGCTGAATAAACCAATATTGCTCCACAATGTGAGAAAGA
TTGAAGTTTAAATTGATGACTAAGCAAATGATATCAACTTTGATCAGTAT
ACATATATTTTAAATCACTTTTCTTCAGAATCGAGAATAACGAGAGTGAT
GGTGAAGAAGAAAAATCAACTTCGCATCAAAACAAGAAAACCAAATTCTC
ACCAACACCCAATGAACTAAAAGGAAAACACAAATTAGACGGTATGTATG
CCTAATATTTTCATTTAGAGGATTACCACATGAAAAGTCCCTGAAAATTG
TTGAAATTTGTAAAGCAAAAATAACAACGTTGGTTATTCATAATATTCAT
TACTTTCATTACTTATTATTCGACGGAAAGGCCCACATCATGAAATTGAA
AGTGGGGGGGGGGGCAATGAATATAAAGTCTATTGAGGTGCAACCAAGAA
TTTTCAGATTGCAAAAAATTAGCTTATTTTACCATATTTTATCTCTATAG
AATCACCAGAATCTGGAATTTCCAGTTTAAATTCAACTCCAAGCAAGATG
CGTTTCAAAGACACAATTTCACCTCCAACACATATATCGTCTTACGAAAG
TCACATCAAATCACGACGTTTCCTTTCCCCGACAGCCATGTTTACTTCAT
CACGTGATCAATTCTTCTCATCACGTGATTTTTCACCACGTGATGAGTTC
CGATATCATTATAACCCGGCCGCATCGCCTTCCCCATCCCCGAGTTTCGA
AAATTATCTCCCACAAAACACTTCAGCGAATTCAGTATTACCAATGGTCC
TACCCGGATCTATTTATTCGTCCGGAAATCCTCAAAATACAGTGAATACA
CCCGGTACTGAATATAATAACGGGGCGAGTTTCCACGATCACGTAGGAGC
AGGAAAATCGCTTAAAAAACAATTACAACTCAATACGGAACTTTTATCGA
GTACTTCTTCTCAATGGCAGAATTTTGGCAGTTATACCACACCAACTACC
AATGTCGGATCACCTTATACACAAAACAATTATTTTTCATCGACCCCCAA
TTACGGACGGTATGGAAGCACCCCTCTTTGTAGACACGGGCTGGCGCATT
GTGCAGTTTGCTCATATAGTAGCTCTATTTTAAATTCAGCTAATTTATAA
TGATTATTTTTGTTTCATTTCGATTTTCGTCTTTTTTGTTGTTGTGAATA
TTTTTCATTTTTGAATTTTTTGTAAAAAGAAACTTTTAAAAAGAGAGGCC
AGAAATAGGACAAACACGTTTTTTTATAAGAACATCCAAAATCTTTGAAG
CCTTGGGATGTTCTTAACTTTTTGAGATTCAAGCCTAAAAATGTTAATTA
ACATATTCTTATTTTCGCCATTTTTTGAGTGTTTTTGTCTATTTCCCTAA
GAAATTCAGTATTTTAGAGTCCGCAAAGCCCTAAAATGTTCTTAACTTGT
TCTTAACATTTTGGTCATCGAAATCTTAAGTTTTTATATAGTTTGTTCTT
ATAAAAAACCGTGTAGTAGTAATTTGCAACTTGGCGACGCTAGTCTTAAG
TTATGTTTCAAAGACTTTAACTTGTAAGCTTTTTCAATACTGTGAAAAAG
TCCTGTAAAAGTCGATGCCTCTTGTTGTTAGAATTTGCTGATGAACTTTG
CAAAGAATATTTGCTAATAGCAAAGTTAAGTGTAAATAGGGAGTTAATGT
ATCAGAGGATTTCGAGGGCAACGATAAAGTGAAGTCGATGCAAAACAAAG
TCGATAGTTGATGTACGGCTCTATATCGCCGTTGCTCACCTAAACAGATG
ACGGTATTTTGGGTTTTTTACCTTCGTGAGGACGGCGATTTTGGTGACAT
GTCAACTTTGCTTTATATCGTCTCCTTCGATTTACATAACTTTGCTAATA
GATAAATCACGAACGAGGACGGACGAATTTCCACTAGCCTTTATTCACAG
TAAGGAACTTTTTCTACAGGCTAAGTACAAAGCAAGATAGACTTACCTCG
CGTAGTATATCCGCTTTGTAATTTTTCTATCGATACTTTAACATCGCCAA
TCTAATGTTTTTAAAGGAGAGCGAATACAAGTGAGATAAATTCTGTTATG
AAATATGTACCAAAACCATGATAAATAAAGTCTTAACGAAATAAGCTTGC
GTCAATTTTTTTTGTTGCGTTCTCATTGTATGACTTCATTTTTAATGTTA
TTTTTAATTGAACTTTAATTTACTTTAAATCTTTTGTTCATAATTTATTT
CAAAATATACGATAATTTTATTTTTTATTTATCCATTTTGTGACCTTTTG
GGCACCTTTTTTTATTAAATACAATTTTAAAATTTACATATCACTACAAA
TTGAGCTGTATATTATATCTTTAAAATTTTCAATAAAATCGTTTTTCTGA
AATATTTCAATTAAATTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002012XLOC_002012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003606-exon-sc0000030-1575043694:271519..272221TCONS_00003606-exon-sc0000030-1575043694:271519..272221Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1575043694:271029..271109TCONS_00003606-exon-sc0000030-1575043694:271029..271109Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1575043694:270829..270943TCONS_00003606-exon-sc0000030-1575043694:270829..270943Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1575043694:268881..269148TCONS_00003606-exon-sc0000030-1575043694:268881..269148Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1575043694:267719..267865TCONS_00003606-exon-sc0000030-1575043694:267719..267865Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1575043694:266778..266857TCONS_00003606-exon-sc0000030-1575043694:266778..266857Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1575043694:266431..266543TCONS_00003606-exon-sc0000030-1575043694:266431..266543Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1575043694:264251..266171TCONS_00003606-exon-sc0000030-1575043694:264251..266171Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:271519..272221TCONS_00003606-exon-sc0000030-1510915933:271519..272221Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:271029..271109TCONS_00003606-exon-sc0000030-1510915933:271029..271109Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:270829..270943TCONS_00003606-exon-sc0000030-1510915933:270829..270943Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:268881..269148TCONS_00003606-exon-sc0000030-1510915933:268881..269148Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:267719..267865TCONS_00003606-exon-sc0000030-1510915933:267719..267865Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:266778..266857TCONS_00003606-exon-sc0000030-1510915933:266778..266857Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:266431..266543TCONS_00003606-exon-sc0000030-1510915933:266431..266543Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1510915933:264251..266171TCONS_00003606-exon-sc0000030-1510915933:264251..266171Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:271519..272221TCONS_00003606-exon-sc0000030-1491911889:271519..272221Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:271029..271109TCONS_00003606-exon-sc0000030-1491911889:271029..271109Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:270829..270943TCONS_00003606-exon-sc0000030-1491911889:270829..270943Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:268881..269148TCONS_00003606-exon-sc0000030-1491911889:268881..269148Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:267719..267865TCONS_00003606-exon-sc0000030-1491911889:267719..267865Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:266778..266857TCONS_00003606-exon-sc0000030-1491911889:266778..266857Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:266431..266543TCONS_00003606-exon-sc0000030-1491911889:266431..266543Clytia hemisphaericaexon
TCONS_00003606-exon-sc0000030-1491911889:264251..266171TCONS_00003606-exon-sc0000030-1491911889:264251..266171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:264251..272221 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159093	0.310282	0.226947	0.888118	20.6461	25.29	8.23878	7.90766	2.62186	1.89656	0.687703	1.56196	0.093033	0.111084	0.0903383	0.0256269	0.11943	0.039054	0.169119	0.176971	0	0	0	0	0	0.437123	0	0	0	0
Blast
[Close]
BLAST of TCONS_00003606 vs. Swiss-Prot (Human)
Match: TBX2 (T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 6.159e-83
Identity = 128/214 (59.81%), Postives = 164/214 (76.64%), Query Frame = 1 
Query:  754 PPAQYLDYGKHCNVDDDDENRPVVTLENKSLWQEFHEVGTEMIITKTGRRMFPPIKFRISNLEPKTKYILIMDIIPADDCRYKFSRGAWLIAGKADPPMPKRMFIHPDGPNTGNQWMSKSISFNKMKVTNCVQGKNGYPILNSMHKYQPRFHIAKVADFYKMNMSNLKTFVFRETEFLAVTAYQNEKVTKLKIKYNPFAKGFREDGAAGKRISR 1395
            PPA +L   K    +D+ E+ P VTLE K LW +FH++GTEM+ITK+GRRMFPP K R+S L+ K KYIL+MDI+ ADDCRYKF    W++AGKADP MPKRM+IHPD P TG QWM+K ++F+K+K+TN +  K+G+ ILNSMHKYQPRFHI +  D  K+  S  +T+VF ET+F+AVTAYQN+K+T+LKI  NPFAKGFR+ G  G+R  R
Sbjct:   84 PPAAHLRSLKSLEPEDEVEDDPKVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTG-NGRREKR 296
The following BLAST results are available for this feature:
BLAST of TCONS_00003606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBX26.159e-8359.81T-box transcription factor TBX2 OS=Homo sapiens GN... [more]
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