TCONS_00003597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003597
Unique NameTCONS_00003597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003597 ID=TCONS_00003597|Name=TCONS_00003597|organism=Clytia hemisphaerica|type=transcript|length=221bp
ACCTTTGCGATTGTTTTGGGTGAGATTTCCCCCGTCTCTAATAAACGTAA
CAATTCGTATCTCTCGTCTTCAGTTTTTCCGTAcaagaaattgaaataac
tTTGATTGACTTCGCGGTCGCGTGAACCCTCTAAGAGACCGCACGACACT
TTATGATGAATACNTTGAACCAAGCTGAAGCAACGGTTACTGAGACTTGC
GACGTAGAAATAATGTTGTAG
Run BLAST on NCBI

transcript from alignment at sc0000030:142350..142628-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003597 ID=TCONS_00003597|Name=TCONS_00003597|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0000030:142350..142628- (Clytia hemisphaerica)
ACCTTTGCGATTGTTTTGGGTGAGATTTCCCCCGTCTCTAATAAACGTAA
CAATTCGTATCTCTCGTCTTCAGTTTTTCCGTACAAGAAATTGAAATAAC
TTTGATTGACTTCGCGGTCGCGTGAACCCTCTAAGAGACCGCACGACACT
TTATGATGAATACGCTGGACCAAGCTGAAGCACCGGTTACTGAGACTTGC
GACGTAGAAATAATGTTGTAGNTTGAACCAAGCTGAAGCAACGGTTACTG
AGACTTGCGACGTAGAAATAATGTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002007XLOC_002007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003597-exon-sc0000030-1575043694:142466..142628TCONS_00003597-exon-sc0000030-1575043694:142466..142628Clytia hemisphaericaexon
TCONS_00003597-exon-sc0000030-1575043694:142350..142407TCONS_00003597-exon-sc0000030-1575043694:142350..142407Clytia hemisphaericaexon
TCONS_00003597-exon-sc0000030-1510915933:142466..142628TCONS_00003597-exon-sc0000030-1510915933:142466..142628Clytia hemisphaericaexon
TCONS_00003597-exon-sc0000030-1510915933:142350..142407TCONS_00003597-exon-sc0000030-1510915933:142350..142407Clytia hemisphaericaexon
TCONS_00003597-exon-sc0000030-1491911889:142466..142628TCONS_00003597-exon-sc0000030-1491911889:142466..142628Clytia hemisphaericaexon
TCONS_00003597-exon-sc0000030-1491911889:142350..142407TCONS_00003597-exon-sc0000030-1491911889:142350..142407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:142350..142628 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	50.198	41.8114	26.0827	52.7058	0	0.68958	4.06334	0	0	0.995654	2.17633	2.69777	1.61927	1.8227	0	1.83288	0	0.915588	0	0.048371	0	0.829673	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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