TCONS_00003594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003594
Unique NameTCONS_00003594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003594 ID=TCONS_00003594|Name=TCONS_00003594|organism=Clytia hemisphaerica|type=transcript|length=206bp
CCGAACTGGACAGCTTAAAGCGGTGATAGCGTTCATTAACGAAGTAAAAG
TGATATCAATGGAATCTTATATCCGATAACGCTGGTAGCAGAACTAGAAG
TAGTTGTTTTCATTCCTACGTTGGCAGGATGTTGAATTTTGTGGTACTGT
TTCCTGTACAGACTTATCTTCCAAATAATCAGCTTTTAGTGATTCTAAAG
TCGCTA
Run BLAST on NCBI

transcript from alignment at sc0000030:35382..35721-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003594 ID=TCONS_00003594|Name=TCONS_00003594|organism=Clytia hemisphaerica|type=transcript|length=340bp|location=Sequence derived from alignment at sc0000030:35382..35721- (Clytia hemisphaerica)
CCGAACTGGACAGCTTAAAGCGGTGATAGCGTTCATTAACGAAGTAAAAG
TGATATCAATGGAATCTTATATCCGATAACGCTGGTAGCAGAACTAGAAG
TAGTTGTTTTCATTCCTACGTTGGCAGGATGTTGAATTTTGTGGTACTGT
TTCCTGTACAGACATTATCTATGATGGCACCAAACCCTGATGGCACACGA
CGTTGTTTCAACGTTCATCTAACGTTATATGGACATTGTGAACGTTAGAT
AAACGTCGAAAAAACGTTGTGTGAATTGAATTGAATTGAGTACAGACTTA
TCTTCCAAATAATCAGCTTTTAGTGATTCTAAAGTCGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002005XLOC_002005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003594-exon-sc0000030-1575043694:35559..35721TCONS_00003594-exon-sc0000030-1575043694:35559..35721Clytia hemisphaericaexon
TCONS_00003594-exon-sc0000030-1575043694:35382..35424TCONS_00003594-exon-sc0000030-1575043694:35382..35424Clytia hemisphaericaexon
TCONS_00003594-exon-sc0000030-1510915933:35559..35721TCONS_00003594-exon-sc0000030-1510915933:35559..35721Clytia hemisphaericaexon
TCONS_00003594-exon-sc0000030-1510915933:35382..35424TCONS_00003594-exon-sc0000030-1510915933:35382..35424Clytia hemisphaericaexon
TCONS_00003594-exon-sc0000030-1491911889:35559..35721TCONS_00003594-exon-sc0000030-1491911889:35559..35721Clytia hemisphaericaexon
TCONS_00003594-exon-sc0000030-1491911889:35382..35424TCONS_00003594-exon-sc0000030-1491911889:35382..35424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:35382..35721 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.18412	6.5157	3.93046	9.19912	0	4.78657	3.09731	3.05407	3.04983	6.33456	0	0	0	0	0	0	0	0	0	0	13.1293	14.647	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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