TCONS_00003589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003589
Unique NameTCONS_00003589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003589 ID=TCONS_00003589|Name=TCONS_00003589|organism=Clytia hemisphaerica|type=transcript|length=1019bp
CTGGAAACTAGTTTCATGGGAAACGGGTTTCTGCGCACAGCATTTTTGGA
CGACAGAATCATTGACATTTTAAACGAttctcattttttcttcaaataga
tttgtaaattacgattttatatttttgtaaaaattattttgtagtTAATT
TTATAATCCATTcacaaatttcaaaatgaaatagaTAACATTTTTGCAAG
CTTTATTTGACTGTTACAACacttattcgaagaaaatttaaTGGTTCTGA
GAAACTAAAAATGCtattaagaaaaatattatctATGATAATTATCTTTG
CTTCTCTagtaaatcaataaaaaattaaacaagaaTACTATGAATAGAAT
ATTTGCAAGTGTTAAACAGGTTACAAGAATAATTTCTTCATCAGTTGGCC
AACAAAGTGGAGGTATTCTAAACAATCTTTTCAACAATGGCAGTGCTGTT
GGTCGCCGCCAAGGAATTCTAGGTGGATTTGAAATTCTTCAGATCCGGGG
TGCAAAATTTGGTAGAGAATATCAACCAAATAACTACCAGAGAAAAAAGA
AGCATGGTTATTTGAAACGAAAGAAAACTGCTGCTGGTCGAGAGGTTCTT
GCAAGACGTGCTGCCAAAGGAAGAAAGTGGTTGTCTCATTAAGTCTGGGA
GTTGGACTGGCCTTATTATGGACTTGGAActattttatatttcaaaaaac
cTTTCATTTGCTAAAACTCTTGCTTATATGCGAAGTTTCAGAGCTAGAAA
GTCCTCATCAACAGGCTAGTCCTCTCAAGatttaaataataataaacAAT
TTGAAACACTTTAGTCAGTTATACTAACAAACAGGAAAGGGATTACTACC
ATTTTTTCTCAGCATAGTGACTGCTATTGGAGTCAATATTATATTAACAT
CCTGCGACCAATGACCATAAATTTTTATACTTGGTGCTTTGCTTTTGCCA
TCAACAAGTttgtaaataatatttttatacaACATAAATTACAGAAAATA
TGACTAAAGACAATTTATG
Run BLAST on NCBI

protein sequence of TCONS_00003589-protein

>TCONS_00003589-protein ID=TCONS_00003589-protein|Name=TCONS_00003589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MNRIFASVKQVTRIISSSVGQQSGGILNNLFNNGSAVGRRQGILGGFEIL
QIRGAKFGREYQPNNYQRKKKHGYLKRKKTAAGREVLARRAAKGRKWLSH
Run BLAST on NCBI

transcript from alignment at sc0000030:14762..16619-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003589 ID=TCONS_00003589|Name=TCONS_00003589|organism=Clytia hemisphaerica|type=transcript|length=1858bp|location=Sequence derived from alignment at sc0000030:14762..16619- (Clytia hemisphaerica)
CTGGAAACTAGTTTCATGGGAAACGGGTTTCTGCGCACAGCATTTTTGGA
CGACAGAATCATTGACATTTTAAACGATTCTCATTTTTTCTTCAAATAGA
TTTGTAAATTACGATTTTATATTTTTGTAAAAATTATTTTGTAGTTAATT
TTATAATCCATTCACAAATTTCAAAATGAAATAGATAACATTTTTGCAAG
CTTTATTTGACTGTTACAACACTTATTCGAAGAAAATTTAATGGTTCTGA
GAAACTAAAAATGCTATTAAGAAAAATATTATCTATGATAATTATCTTTG
CTTCTCTAGTAAATCAATAAAAAATTAAACAAGAATACTATGAATAGAAT
ATTTGCAAGTGTTAAACAGGTTACAAGAATAATTTCTTCATCAGTTGGCC
AACAAAGTGGAGGTATTCTAAACAATCTTTTCAACAATGGCAGTGCTGTT
GGTCGCCGCCAAGGAATTCTAGGTGGATTTGAAATTCTTCAGGTAAAAAT
GATTTATAACTTTTTCCAAAGTCTACATAATGATGTAATTTTTATTTATT
CATGGTATGCACCACTGGAGTCTCTTCTGAGAACTTTCAAAATTTTCCAC
TCAAAACGTCACTTTTCTATTTTTTTAAGTGACGTATTATTGGGTGGAAG
ATTTTGAAAGTTCTCAGAAGGCTCTCCAGTGGTGCATATCATGAATACCT
TAAATAGTAAAAGGCTTACACGACAAAACAACAGTAACAGCAGTAACAAT
GAACAAACAACAATAACATACTCTCTCTAACATGGGACTAAAAATTTTCT
TGAATTAGAGAAAGATTGGGATTAGAGAGAGCAATTTTCAAACCATGCTG
AGGGGACTAAGCTCTAGTTTAGACGGCCCACTTTTTGCCCTGCCTATTCT
AATTGTGAATTAAAGAGGGCATAAAGTGGGCTGTCTAAAGTCGATGCATA
GCCCTCTTTTGACGTCAATGCAATGTCTTCTTTCAAACCTTTCCAAGCAA
AGATTTTAACAACCAACTTTGTGCCCTCTTTCTGCCTACTCTAACAATTA
GCCTATGCAGGGCAGAAAGTCGGCCGTCTAAACTAGAGCTAATACTTGTG
TTCGAATCACAGAAGGACTCAAATAATGAGGTTCGAATTAGAGAGGGTAC
GGTACCACTAAAAATGTCTTCAAGGAGAGATTTAGACCACGTTCACACGC
TACGGTCTTGTTTCGCTCCGAAACGAAATGAAGCCATTCTATTGGTTAAA
TTCAAGATTTGCGTCAATTCTAACCAATAGAATGGCTTCATTTCGTTTCT
TTCCTTCCTTTCATGGTCTTAATCTTTTTAGATCCGGGGTGCAAAATTTG
GTAGAGAATATCAACCAAATAACTACCAGAGAAAAAAGAAGCATGGTTAT
TTGAAACGAAAGAAAACTGCTGCTGGTCGAGAGGTTCTTGCAAGACGTGC
TGCCAAAGGAAGAAAGTGGTTGTCTCATTAAGTCTGGGAGTTGGACTGGC
CTTATTATGGACTTGGAACTATTTTATATTTCAAAAAACCTTTCATTTGC
TAAAACTCTTGCTTATATGCGAAGTTTCAGAGCTAGAAAGTCCTCATCAA
CAGGCTAGTCCTCTCAAGATTTAAATAATAATAAACAATTTGAAACACTT
TAGTCAGTTATACTAACAAACAGGAAAGGGATTACTACCATTTTTTCTCA
GCATAGTGACTGCTATTGGAGTCAATATTATATTAACATCCTGCGACCAA
TGACCATAAATTTTTATACTTGGTGCTTTGCTTTTGCCATCAACAAGTTT
GTAAATAATATTTTTATACAACATAAATTACAGAAAATATGACTAAAGAC
AATTTATG

Coding sequence (CDS) from alignment at sc0000030:14762..16619-

>TCONS_00003589 ID=TCONS_00003589|Name=TCONS_00003589|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000030:14762..16619- (Clytia hemisphaerica)
ATCCGGGGTGCAAAATTTGGTAGAGAATATCAACCAAATAACTACCAGAG
AAAAAAGAAGCATGGTTATTTGAAACGAAAGAAAACTGCTGCTGGTCGAG
AGGTTCTTGCAAGACGTGCTGCCAAAGGAAGAAAGTGGTTGTCTCATTAA
ATGAATAGAATATTTGCAAGTGTTAAACAGGTTACAAGAATAATTTCTTC
ATCAGTTGGCCAACAAAGTGGAGGTATTCTAAACAATCTTTTCAACAATG
GCAGTGCTGTTGGTCGCCGCCAAGGAATTCTAGGTGGATTTGAAATTCTT
CAGATCCGGGGTGCAAAATTTGGTAGAGAATATCAACCAAATAACTACCA
GAGAAAAAAGAAGCATGGTTATTTGAAACGAAAGAAAACTGCTGCTGGTC
GAGAGGTTCTTGCAAGACGTGCTGCCAAAGGAAGAAAGTGGTTGTCTCAT
TAAATGAATAGAATATTTGCAAGTGTTAAACAGGTTACAAGAATAATTTC
TTCATCAGTTGGCCAACAAAGTGGAGGTATTCTAAACAATCTTTTCAACA
ATGGCAGTGCTGTTGGTCGCCGCCAAGGAATTCTAGGTGGATTTGAAATT
CTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002003XLOC_002003Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003589-proteinTCONS_00003589-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003589-exon-sc0000030-1575043694:16128..16619TCONS_00003589-exon-sc0000030-1575043694:16128..16619Clytia hemisphaericaexon
TCONS_00003589-exon-sc0000030-1575043694:14762..15288TCONS_00003589-exon-sc0000030-1575043694:14762..15288Clytia hemisphaericaexon
TCONS_00003589-exon-sc0000030-1510915933:16128..16619TCONS_00003589-exon-sc0000030-1510915933:16128..16619Clytia hemisphaericaexon
TCONS_00003589-exon-sc0000030-1510915933:14762..15288TCONS_00003589-exon-sc0000030-1510915933:14762..15288Clytia hemisphaericaexon
TCONS_00003589-exon-sc0000030-1491911889:16128..16619TCONS_00003589-exon-sc0000030-1491911889:16128..16619Clytia hemisphaericaexon
TCONS_00003589-exon-sc0000030-1491911889:14762..15288TCONS_00003589-exon-sc0000030-1491911889:14762..15288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:14762..16619 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.0386	17.5118	14.9769	11.7414	46.7805	31.599	23.5945	23.0905	26.5377	19.7959	23.1193	20.9443	13.5162	9.40824	14.5495	10.8629	35.1161	33.3642	8.14801	10.6213	19.5648	18.5283	29.7302	25.0201	13.0261	17.795	13.8734	11.3449	16.0427	14.1656
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000271Ribosomal_L34
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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