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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003588 ID=TCONS_00003588|Name=TCONS_00003588|organism=Clytia hemisphaerica|type=transcript|length=1864bpRun BLAST on NCBI protein sequence of TCONS_00003588-protein >TCONS_00003588-protein ID=TCONS_00003588-protein|Name=TCONS_00003588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp MDEDSSKVGDDLDESMDNLTIEFGPTETVHQWCKMPECDEVVGSKRSKHTRun BLAST on NCBI transcript from alignment at sc0000030:834..14585- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003588 ID=TCONS_00003588|Name=TCONS_00003588|organism=Clytia hemisphaerica|type=transcript|length=13752bp|location=Sequence derived from alignment at sc0000030:834..14585- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:834..14585- >TCONS_00003588 ID=TCONS_00003588|Name=TCONS_00003588|organism=Clytia hemisphaerica|type=CDS|length=23940bp|location=Sequence derived from alignment at sc0000030:834..14585- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003588 vs. Swiss-Prot (Human)
Match: LZTR1 (Leucine-zipper-like transcriptional regulator 1 OS=Homo sapiens GN=LZTR1 PE=1 SV=2) HSP 1 Score: 645.966 bits (1665), Expect = 0.000e+0 Identity = 331/625 (52.96%), Postives = 418/625 (66.88%), Query Frame = 2
Query: 170 SKVGDDLD------ESMDNLTIEFGPTETVHQWCKMPECDEVVGSKRSKHTLVAWSDLLYVFGGDNGKRMLNDLLRFDIKENTWGRVVTTGTPPAPRYHHSAVVYANSMFVFGGYTGDIYSNSNLRNKNDLFEYRFNTGQWIEWQVNGKKPVARSAHGAVVYKSSVWIFAGYDGNARLNDMWMVGLTD-PVPFWTEVTQLGKRPPTCCNFPVAVARDSMYVFSGQSGAKITNDLFLFNFPERKWTRIVTEHLLKGTHPPPSRRYGHTMVAHDTHVYVFGGVADNNLPNDLFWYDLDTKTWDVI----------------------------------------------TTTG--------DIPSGRLFHHADIIDNKMYIFGGTIDNNVRSGELYYFTFSSYPRCTLQDDFGRFLESRQFTNLEFHL--EDEIIEGHKSIVAARSPYLRDEIARAIDRQARGEQTNTCTTTVPEERPSDYVPPTRGRRPSESQRKLVIPLDVNRYAFKVALWFIYTDQI-FPYIKDEHGATTDIMKLMMDVYSLAVKXXXXXXXXXCQQYIEASISTKNVIVALECAEDLGLDLIKELCMRFIVREVHFNQIIMSTDFENLDKVLMIEVVRRKQ 1852
SKV +D +S++ LT+ FGP ETVH+W ++P CDE VG++RSKHT+VA+ D +YVFGGDNGK MLNDLLRFD+K+ +W R TTGTPPAPRYHHSAVVY +SMFVFGGYTGDIYSNSNL+NKNDLFEY+F TGQW EW++ G+ PVARSAHGA VY +WIFAGYDGNARLNDMW +GL D + W EV Q G+ PP+CCNFPVAV RD M+VFSGQSGAKITN+LF F F ++ WTRI TEHLL+G+ PPP RRYGHTMVA D H+YVFGG ADN LPN+L YD+D +TW+V+ TT+ ++PSGRLFH A +I + MYIFGGT+DNN+RSGE+Y F FS YP+CTL +D+GR ESRQF ++EF L ++E ++GH +IV ARS +LR +I +A +R A+ + VP E P G RP V + F+V + F+YTD+I +P G D++ L+MDVY LA+ +L RL LC+QYIEAS+ +NV+V E A L L +KE C+ F+V+E HFNQ+IM +FE L L++E+VRRKQ
Sbjct: 22 SKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPCDEFVGARRSKHTVVAYKDAIYVFGGDNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKIEGRLPVARSAHGATVYSDKLWIFAGYDGNARLNDMWTIGLQDRELTCWEEVAQSGEIPPSCCNFPVAVCRDKMFVFSGQSGAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTLPNELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTLTYEERVGFKKSRDVFGLDFGTTSAKQPTQPASELPSGRLFHAAAVISDAMYIFGGTVDNNIRSGEMYRFQFSCYPKCTLHEDYGRLWESRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKITQARERLAQKLEQE--AAPVPREAPG---VAAGGARPPLLH---VAIREAEARPFEVLMQFLYTDKIKYP----RKGHVEDVL-LIMDVYKLALSFQLCRLEQLCRQYIEASVDLQNVLVVCESAARLQLSQLKEHCLNFVVKESHFNQVIMMKEFERLSSPLIVEIVRRKQ 633 The following BLAST results are available for this feature:
BLAST of TCONS_00003588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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