TCONS_00003585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003585
Unique NameTCONS_00003585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003585 ID=TCONS_00003585|Name=TCONS_00003585|organism=Clytia hemisphaerica|type=transcript|length=1298bp
CGCATTCCGAAGACAAACAAATAACAAACACCAACTTTTCATCTTCGGTA
ACAGTAAAGGTCAAGCCATGTACGTCATACGAGCTGGAGATACGGAAGGC
TAAAGCTTTGATGACTCTGGATGAACATTTTTTCACTGTCATTTTAccag
attttgataaaaagactTATTCGTTAAAGaaaaaagaatatgtggTTATC
CGCCGAAAATTAGTAATTCAAGAGGACAGCTTATCTTGGTTGTATGGTTG
CTCGTGTGACCCATTTAAACAAATCTACATCGATGGCCTTTCATTTGATA
GCGATTATGTCCAGAAAGATCAAGATTTATGCATCCATCAAACCGTTGCA
AAGATTCTAATTCCCGAACTTGACGGGTGGACCGAAGATGAAGACCCTTT
TGaAACATTTGAAATCCATACACTGAAATCCAAAACGGAGACTGATGTAT
ACGATATCGCTTTCGCCAATAAAAACACAGTTCTTGTGGTGTTCGAGGGG
GATGTTGGGGTCGTGACGTTTAATGGAACGCGGTTTTACTGCAACATGTG
TCACAAAAACCATTGTATCCATACAACGTACCTGAAGAAAAGACAAAAGG
AAGATGAGCCACCTGAATTTTTGGATGATTATTTCAAGATCAAGCCATCC
ACTGAACACACGAAAACCAAAGACGCAGTCTCTAAGAAGCAGATTCAATT
TGATGTCCCTCCCCACATGAAACATACTACTCAATCCCCGAATGTGTATT
TGCCAAAATTTGGAGAACTCTTTCTTTGTACTGACGACGATGAGTTATGC
CGTGCAGATTGTGGTGGTGCTTTGATGACATTAAGCAGTTTTTACGACGT
TCCGCTTTATTGCAAAGGATATTCGATTATGTGCAGAGTTGCACCCTACA
CGGATATTACCAGATAATGGTGAAGGAACACAGTGACGCAGGAAGAACCC
TTGAAAGATTCCGTCACAATGATTTACGGTCGTCGTGGTACGCTTTCCTC
AATTTGTTGTCCATCTCTTTTGAAGACGGTGCTAAATGTGGTCAATGTGG
CAAGATACCTGACATCGTAGTGTGTGATGCCACCGGAATGGGTTATCAAC
GAAAATTCCTGACAGCTGGTTTATCCGACAGTGGAAATCAATTTGTTCAT
AAAAGATATTCGTATGATTACCTTAATTGTTACTTATTACGTGAAACACA
AGATATAAAAGGGGGCAGGCAATTGCACCACGACACCTATGACAGTCAGT
ACGGCGGTGACGCGATTGTCAAATTTGTAAAATGCAGTTAGTATACCC
Run BLAST on NCBI

transcript from alignment at sc0000030:908990..912961+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003585 ID=TCONS_00003585|Name=TCONS_00003585|organism=Clytia hemisphaerica|type=transcript|length=3972bp|location=Sequence derived from alignment at sc0000030:908990..912961+ (Clytia hemisphaerica)
CGCATTCCGAAGACAAACAAATAACAAACACCAACTTTTCATCTTCGGTa
aatttggttttattttaGTACAGTTTTTTTTATTGGAACTGTTAATTTTG
GCCAGGCCTTGATGTGCTTATTTTGTTGAGAAATTAATCGCTTAATCAGA
CTGGTCATGTTCTTGTGATGCtcctattttgtttttgaatttcagcTTGT
AAATGTTCTTATAACCTGGGTtataataaagaaagaaaacttGCGGGATA
TATTTTATTCTGGTAAGTCTCTTTACAGTGGTATCCAAATCAAACtccat
ttattttcaattttccaataattttttttatctattcaGGTAACAGTAAA
GGTCAAGCCATGTACGTCATACGAGCTGGAGATACGGAAGGCTAAAGCTT
TGATGACTCTGGATGAACATTTTTTCACTGTCATTTTAccagattttgat
aaaaagactTATTCGTTAAAGGTTTTTCATAATTACTAACGCCAAATAAT
TTTAAGTTGTCACAAAAAGCTCaagaaaaattgagcaaaaataATGTCTT
GCCATTGATTaagtttattatttcaaaagattaagttgattttaaaaagt
tacGGCCGAGTAAGTATTATTAAGTAACGACCTAACTTCCTAAATTGTTA
CAGCCCTACCTCTATTTAGcaataaatgttcttatatttttaaAAGAGCT
AATATAACTGAATGATACTTTAAAGGGTTTTAATAccaaatttcattgtt
ttaagtTAAAACTGAGTAATTACTGTTTTCCTCCTTTTGTTTACGtttag
aaaaaagaatatgtggTTATCCGCCGAAAATTAGTAATTCAAGAGGACAG
CTTATCTTGGTTGTATGGTTGCTCGTGTGACCCATTTAAACAAATCTACA
TCGATGGCCTTTCATTTGATAGCGATTATGTCCAGAAAGATCAAGGTATT
TTGAAATACCAGTGCTCAAGGGTTTTGAACTTCCCGTGGAAAAACGAATT
TTCTTGTCCAAATAAACTAGAAAATAAATAATGACTCCCCTCTTTAGAAT
agaattttcttagaaaaagtCTCATGGCATCGATCTGAAATCAGCAGAGT
TGCAAAAACATCACATATTTTGATGGTGAAGTTGTAATAAACTAGTATGA
ACCGGTAGTATTAATTTAGGGGAGTTAGAATTTACTGTTACACCTTCagt
taaaaaacattttcttaaatATCTGAtgcgaaatatttttgctttccaCT
AGATTTATGCATCCATCAAACCGTTGCAAAGATTCTAATTCCCGAACTTG
ACGGGTGGACCGAAGATGAAGACCCTTTTGGTATACTTTTTTAGCTAAAG
TTTTGTTTGCTTTGTGTTTTTTACATTGTTTACAAAATGACGGACTCGTG
AGACCCTTGAAGGCTGTCCTGGGAAATTTTGCGCGCCTGAGGCGCCTTTG
CGATGACCGGAGGGCAACATTTCCACTACAGCTGAAACGAAGTCTTTCAT
TATTGTATTTTGCGAACTGTTTCCTTGCACgcttttcgaaattttgttga
atacgtcaattcaagaaaaattagatGAGAATGAAGTCATGCATTCCAGA
TAGTCGTGCAGAATTATTGCGAAAGATTAGCCGGTTAACAATATTCATTC
TTACCAATGCACGCATTAGCCATTCTAATTACAGGACACAAAGTAATTAG
ATCtttttttccctaaatttagaAACATTTGAAATCCATACACTGAAATC
CAAAACGGTAAGTAATGCGAAATGCACTGAAGATGACTTACGTAGTTTGA
AAAGAGAGTGTTGGTTTTTAAATAGAATTAAACATCAGTCGTTTGATTTT
TCTCCTGTTAATTGACAATTACTTTTAAGTAAATTAAAACTATAGGTTTT
AGGAGCTCTAGTTAAATAGATAATTGCGCTTTAAACATTTTGTTTGTAGC
CTCTTTTTAGTGATTTGGTTGGATCTTCATCATACTTTGAggtctttgaa
aaatcaagacTGTGTTTTTGTGAGCTGtgcttttttctcttttttgagaa
gataaaaaattagcCTGTATTTTATGTTGCATTATTAGGAGACTGATGTA
TACGATATCGCTTTCGCCAATAAAAACACAGTTCTTGTGGTGTTCGAGGG
GGATGTTGGGGTCGTGACGTTTAATGGAACGCGGTTTTACTGCAACATGT
GTCACAAAAACCATTGTATCCATACAACGTACCTGAAGAAAAGACAAAAG
GAAGATGAGCCACCTGAATTTTTGGATGATTATTTCAAGATCAAGCCATC
CACTGAACACACGAAAACCAAAGACGCAGTCTCTAAGAAGCAGATTCAAT
TTGATGTCCCTCCCCACATGAAACATACTACTCAATCCCCGAATGTGTAT
TTGCCAAAATTTGGAGAACTCTTTCTTTGTACTGACGACGATGAGTTATG
CCGTGCAGATTGTGGTGGTGCTTTGATGACATTAAGCAGTTTTTACGACG
TTCCGCTTTATTGCAAAGGATATTCGATTATGTGCAGAGGTAGGTTGTAT
AGTCTTTATGCACACTTTCTATAATTCTAGGTTGTATTTTATGCCACATG
CCTCatgtttctattgtttttaataaaagtagataaatatttaaaatcgt
CTTTTCAGTGAAGACAAAAGAATGCGAACTGTGCCACAAAGTTTGGGATT
ATGGGGGGATTATGATGGTGGATGTCAATCCATTctaaacatggaaaagt
ttttgGTGCACCACAGCCTTCTCAGAGACTACATGTATCATTTTCTCCAT
AGCAATAGGTACTATTAAAGGAGTGAGGACTCGagaagttttttctttta
tcaaatattttattGCGTTGTGTTGGCATTATTAAAGATCTTTGCTCTAA
AGCAAGGTCTAGAGTTTTGAGTCTAAACAGAATCTCGCGTTAAACGAAAA
ATTATTTATATTGCCTTTATTATGTTATTCTTCAATTATACACCTTTAAC
TTACATGTTCACCTTCAGTTTACAATAAGACAATAAATATATAAGAATAT
CTTGACTGCATCAAAGATGCTTCTTATTTAtttatctatattataatacg
cttaaatcggaactctcccattctcgcatgaggctttttcgctagcgatt
tttaaatacacggcaatttttttcgcgccttttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATACAAAtccctac
aagtttctgaaaaatagaaaagcgagcgaagcgagcgtattaaaaggagt
aagaagtcgtctcggacgacgccgggacggctagtttatctttattcttt
ttatgtttcaagTTGCACCCTACACGGATATTACCAGATAATGGTGAAGG
AACACAGTGACGCAGGAAGAACCCTTGAAAGATTCCGTCACAATGATTTA
CGGTCGTCGTGGTACGCTTTCCTCAATTTGTTGTCCATCTCTTTTGAAGA
CGGTGCTAAATGTGGTCAATGTGGCAAGATACCTGACATCGTAGTGTGTG
ATGCCACCGGAATGGGTTATCAACGAAAATTCCTGACAGCTGGTTTATCC
GACAGTGGAAATCAATTTGTTCATAAAAGATATTCGTATGATTACCTTAA
TTGTTACTTATTACGTGAAACACAAGATATAAAAGGGGGCAGGCAATTGC
ACCACGACACCTATGACAGTCAGTACGGCGGTGACGCGATTGTCAAATTT
GTAAAATGCAGTTAGTATACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002001XLOC_002001Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003585-exon-sc0000030-1491911889:908990..909036TCONS_00003585-exon-sc0000030-1491911889:908990..909036Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1510915933:908990..909036TCONS_00003585-exon-sc0000030-1510915933:908990..909036Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1575043694:908990..909036TCONS_00003585-exon-sc0000030-1575043694:908990..909036Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1491911889:909329..909460TCONS_00003585-exon-sc0000030-1491911889:909329..909460Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1510915933:909329..909460TCONS_00003585-exon-sc0000030-1510915933:909329..909460Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1575043694:909329..909460TCONS_00003585-exon-sc0000030-1575043694:909329..909460Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1491911889:909790..909934TCONS_00003585-exon-sc0000030-1491911889:909790..909934Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1510915933:909790..909934TCONS_00003585-exon-sc0000030-1510915933:909790..909934Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1575043694:909790..909934TCONS_00003585-exon-sc0000030-1575043694:909790..909934Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1491911889:910242..910319TCONS_00003585-exon-sc0000030-1491911889:910242..910319Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1510915933:910242..910319TCONS_00003585-exon-sc0000030-1510915933:910242..910319Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1575043694:910242..910319TCONS_00003585-exon-sc0000030-1575043694:910242..910319Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1491911889:910712..910746TCONS_00003585-exon-sc0000030-1491911889:910712..910746Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1510915933:910712..910746TCONS_00003585-exon-sc0000030-1510915933:910712..910746Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1575043694:910712..910746TCONS_00003585-exon-sc0000030-1575043694:910712..910746Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1491911889:911078..911528TCONS_00003585-exon-sc0000030-1491911889:911078..911528Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1510915933:911078..911528TCONS_00003585-exon-sc0000030-1510915933:911078..911528Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1575043694:911078..911528TCONS_00003585-exon-sc0000030-1575043694:911078..911528Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1491911889:912552..912961TCONS_00003585-exon-sc0000030-1491911889:912552..912961Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1510915933:912552..912961TCONS_00003585-exon-sc0000030-1510915933:912552..912961Clytia hemisphaericaexon
TCONS_00003585-exon-sc0000030-1575043694:912552..912961TCONS_00003585-exon-sc0000030-1575043694:912552..912961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:908990..912961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0503719	0	0.309797	0	0.120951	0.224116	0.183953	0.213145	0	0.084878	0.0678129	0.064492	0.0741173	0.0561681	0.25483	0.26607	0	0	0.23785	0	0.178034	0	0.143188	0.151066	0	0	0.160369	0.247558
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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