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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003582 ID=TCONS_00003582|Name=TCONS_00003582|organism=Clytia hemisphaerica|type=transcript|length=3038bpRun BLAST on NCBI protein sequence of TCONS_00003582-protein >TCONS_00003582-protein ID=TCONS_00003582-protein|Name=TCONS_00003582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MQDTIDKPIKNMKDEIDVGSLKTKKTRASAEDLGPVLELIFKYLDAISLRRun BLAST on NCBI transcript from alignment at sc0000030:870437..879519+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003582 ID=TCONS_00003582|Name=TCONS_00003582|organism=Clytia hemisphaerica|type=transcript|length=9083bp|location=Sequence derived from alignment at sc0000030:870437..879519+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:870437..879519+ >TCONS_00003582 ID=TCONS_00003582|Name=TCONS_00003582|organism=Clytia hemisphaerica|type=CDS|length=10872bp|location=Sequence derived from alignment at sc0000030:870437..879519+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003582 vs. Swiss-Prot (Human)
Match: FBW1B (F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11 PE=1 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 6.858e-93 Identity = 172/433 (39.72%), Postives = 258/433 (59.58%), Query Frame = 3
Query: 1242 TRASAEDLGPVLELIFKYLDAISLRAAEKVCKKWLNCIINSRLWKNQIKEKAHREIVWKGLGKRRGWMDSL--NTLSEEFDHKYFRALYSKTEKDIKRLVCNWRKGRYHVDRL---DSGGLGVNWLQYDDQKIVTGQQNGEIKVWDRHTLACNKVLDGHTKGVLCLQYDGDILITGSIDGTVKVWGLTSGELMNTLEHHTKPVAILVYKHGVLVTSAALENVIYVFTVHSSKDIKLRSKLLGYRTDCLALDLDERYIVTAARDFPQRCGDTDIKVWNTKTCEHVRDITGSEEGTITLQYRYPLIVTCCFSFDMKVWDVENGTCLRTFKGHPKLLGFLRFNNKYMVSADGDGVCKIWDMEAILDQQRKEEDLLLASFQEYHSDGSILANTFANTNHLQFDDFIIMTGNSDGTIMIYDF-DEEKISQHQGRKNSK 2522
T + L + E I YLDA SL AAE VCK+W I LWK I+ + +WKGL +RRGW L N ++ + ++R+LY K +DI+ + NWR GR+++ R+ GV LQYDD+KI++G ++ IK+WD+ +L C KVL GHT VLCLQYD +++TGS D TV+VW + +GE++NTL HH + V L + +G++VT + + I V+ + S+ DI LR L+G+R +D D++YIV+A+ GD IKVW+T TCE VR + G + G LQYR L+V+ +++WD+E G CLR +GH +L+ +RF+NK +VS DG K+WD++A LD + L L + E+ G + LQFD+F I++ + D TI+I+DF + +Q++ R S+
Sbjct: 121 TALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSK-DRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSAS-------GDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH--SGRVF--------RLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSR 535 The following BLAST results are available for this feature:
BLAST of TCONS_00003582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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