TCONS_00003578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003578
Unique NameTCONS_00003578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003578 ID=TCONS_00003578|Name=TCONS_00003578|organism=Clytia hemisphaerica|type=transcript|length=1489bp
TATTAGAGATACAATCTGGTTTTCTGTAAAGTTTTTGTTGAATTATTTAT
CAACTGCATCAATTCTCACCAGTCTTGAAAGGGAAGCAAAACTTGAAACT
TTAGATCTTGTGTGCACTGCTGCAACTATAAATAGCCTGTTAATCTATGA
TAACCGAATACAGAATATTATGCAACTAGAATCATTCTCAAATACTGAAA
ATAAGCTAACGCAAATATTCCAGAAGATTGAAGCTACACAAGCTCTTCTT
TGTAATGGGAACTTGAAAGTCGATGTGCATTTccaattcaagaaaaaaat
ccGCTTTCATTTGGAATGCCCAGAGGCTGACAATATTGaaagagttttta
aaaatttgcttaaaaGATACTTTTCTAAGTTTCGAACAATAACAGAAGAA
ACGTTTGAAGTTTCTATGCTACGATTCAATAAATTGAAGCAGAAAAGtac
caaaacaaaaaacgttCCACTAAAGATTGAAATAACATCATCTGAAATtg
atttcaagaaatttaaaaaccGTAAATCAGAGGAATCAAAAGCTTTATGG
AGAGAATTGAAAGAGTGTGTCAAgaaggaattacccatagctGAAGTTGA
GCTTTGGGGCTGGGAGCAAGGTTCTCTCTTAATTTTCCTCTCTCTTTGGA
GAACAGACGAAAATCTTTGGTCTGAAAAAGACATCCCTACAATTGACAGC
TTTCTTCTAAACCTTCCATCAATGGTTGAAGATTTTTTACCCTTGTGTGA
ATGTCAATGCAAGCGAATTGGTGATGGTGTAGAAATGAATGAGAAAAATG
AACTGTCTTCAATGGCTGGTATTGCTGTTCAATTTTCTATTACAACGACT
GTGGAGGACACATTTTATGAAGACTTCGAACCAGCTACTTTCAATGAAAT
GGTGTTAGTTGAACTTGGTTATTCAACACCTGAAGAATGCGAAGAAAGTT
TACAATTCAACAAAAGTACTGAAGATTGGATATGGGTAGAAAACCCACAA
GACAATGTTATGGAATTTTCTAGAGGAGAAATGCACTCTCAAAGTGttca
taCAGACACGACTGATTATCCATACTCAACTGACTATCGAGACTCAACAT
ATTCTGGCTACGATACAGACTCTGAAGTTTTGTCCCCGACTGTTACACCA
CCAACCTCATTGGGAAGAGGCTTTAAAGGACAAGTGAGGAGCCCCATCCT
ATCTCCAGAACAATTAAAGAAAGACATCAGTGATGTTACACGCTCAAAAG
TTTATGATGCAAATTCAGATTCTGATGTTTTCTTCTCCACTTGGAAGAAA
GGAAGACAAAGAACGGgtAAATGTCTAACAGACACAACTGATTATCCAAA
CACAACAGATTCTGGTTCAAACTCAGATTCTCAAATTTGGTTCCAAACTG
TTCCATTGTCATCAAGTTCtccaaaaaagacaaaaagaagagTTGCGAAA
TATCATACAGGCAGTACCGGTGATTCAACGAATTCTGGC
Run BLAST on NCBI

transcript from alignment at sc0000030:841144..844582+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003578 ID=TCONS_00003578|Name=TCONS_00003578|organism=Clytia hemisphaerica|type=transcript|length=3439bp|location=Sequence derived from alignment at sc0000030:841144..844582+ (Clytia hemisphaerica)
TATTAGAGATACAATCTGGTTTTCTGTAAAGTTTTTGTTGAATTATTTAT
CAACTGCATCAATTCTCACCAGTCTTGAAAGGGAAGCAAAACTTGAAACT
TTAGATCTTGTGTGCACTGCTGCAACTATAAATAGCCTGTTAATCTATGA
TAACCGAATACAGAATATTATGCAACTAGAATCATTCTCAAATACTGAAA
ATAAGCTAACGCAAATATTCCAGAAGATTGAAGCTACACAAGCTCTTCTT
TGTAATGGGAACTTGAAAGTCGATGTGCATTTccaattcaagaaaaaaat
ccGCTTTCATTTGGAATGCCCAGAGGCTGACAATATTGaaagagttttta
aaaatttgcttaaaaGATACTTTTCTAAGTTTCGAACAATAACAGAAGAA
ACGTTTGAAGTTTCTATGCTACGATTCAATAAATTGAAGCAGAAAAGtac
caaaacaaaaaacgttCCACTAAAGATTGAAATAACATCATCTGAAATtg
atttcaagaaatttaaaaaccGTAAATCAGAGGAATCAAAAGCTTTATGG
AGAGAATTGAAAGAGTGTGTCAAgaaggaattacccatagctGAAGTTGA
GCTTTGGGGCTGGGAGCAAGGTTCTCTCTTAATTTTCCTCTCTCTTTGGA
GAACAGACGAAAATCTTTGGTCTGAAAAAGACATCCCTACAATTGACAGC
TTTCTTCTAAACCTTCCATCAATGGTTGAAGATTTTTTACCCTTGTGTGA
ATGTCAATGCAAGCGAATTGGTGATGGTGTAGAAATGAATGAGAAAAATG
AACTGTCTTCAATGGCTGGTATTGCTGTTCAATTTTCTATTACAACGACT
GTGGAGGACACATTTTATGAAGACTTCGAACCAGCTACTTTCAATGAAAT
GGTGTTAGTTGAACGTAAGTTTAGTATATAAATGTATTTTACACAAATTA
GCATagtttttattacaaattagTGACAAGCTTATGGATATTCATTATAA
AACaataagaaaattattattgGCAATATTGGTTGATTTCATCAAGCTCT
ATTTTTTTGGCTATTCACAGGGTAATACTTTTAGCACGtcaaaaaagtgc
aaaaataaaAGACTTTTTTTGGGCACTAAAGGCTGCGCTAAAATTAAAAG
ATACAAAAATTTTATGATTAAAATATTGAAGTAGAATCAACTCGTTATCT
GTCTTGAGGGTAAAGTATTTGcacaaaaaatgttcaaaaaacaTAATGAG
AATTAAAGTGTGTGCAAATcactattttttgtacaaaaaagttTAGGGAA
CGGAAATTGAAGGTTTCCTCTATGCTCTTTAAAATATAATCGATTGCCAA
TAAATTCTTTAgtgtttcatattttttttcattgaattcttccttttttt
agTTGGTTATTCAACACCTGAAGAATGCGAAGAAAGTTTACAATTCAACA
AAAGTACTGAAGATTGGATATGGGTAGAAAACCCACAAGACAATGTTATG
GAATTTTCTAGAGGAGAAATGCACTCTCAAAGTGGTATATTTattatact
ttttattttaaaagttttggctAGCCTGTCTTGTACTCTATTCATTGGAA
CAATGTCAAACTACGACAATCTTGAAAGTTCTACTGTATATTAATCATCG
AAAAATTTTAATGCACAGGAGTACAGCatgctattcatgatatgcaccac
tggagagtcttctgagaacttttaaaattttccatccaatacgtcactta
acaatagaaaaagtgacgtattgggtggaacaaaaacagaaaagttgcat
aatttcgtgaggTCATtgtagtggtgcatatcatgaacaGGCAAACAAAT
TGAATTTTCTAAAcactgttttttcaaaaaagttcataCAGACACGACTG
ATTATCCATACTCAACTGACTATCGAGACTCAACATATTCTGGCTACGAT
ACAGACTCTGAAGTTTTGTCCCCGACTGTTACACCACCAACCTCATTGGG
AAGAGGCTTTAAAGGACAAGTGAGGAGCCCCATCCTATCTCCAGGTATAG
TATTCTTTTCTTATAATGGATCTTCCCATTGTTAGGTTTTTTTAGATAGA
AAACCTTTGTataattcaaaaattaaaataataatcaataataataatag
ttaACAACAATTAATACCAAATCAAATGTAGAAACAGGAAATTTATTTAA
ATCATttatattgttattattttttattacccGAGTGAGAGGGCCATAGT
CGATATAAACAAAATGACGCTATCGATTCTCACAAATTGTTCTGATCAAA
GTGACGTCATAGGAATTTATATTCCACGTTATAGACCGGGAAATGAGGGA
CAATATTTTTTGACATCGGTCAATATTTTATGGTATTGTCGTCATAAATA
GTTAGTGTAAGGTTTATCATTTCCAAACCTTTGACAATTTCAGAACAATT
AAAGAAAGACATCAGTGATGTTACACGCTCAAAAGTTTATGATGCAAATT
CAGATTCTGATGTTTTCTTCTCCACTTGGAAGAAAGGAAGACAAAGAACG
GGTAAGCTTTCCAGTCTCAGCCCAGAGAGGAAAGATTTCCCTGATTAATT
TAAATCCggattcttttgaattttgaatgaatctTCCTAATTTGGGAACT
TTACGGTGTTGGTATCATTCTAAATTAGAAGACAAATTCCAAATTATTCC
CTAAAGAAATTTAGGATTCAAATTGACAATGAATCCTGAATTCAAAAtga
tattggcaattttgggtattttaacgaaTTTCAGAATTGCAGTTTCGGTA
TTttcactttgtttcattggaaTTTTCAATTTGGAAGGGGTTAattggct
tccaggctatagtTCTCATCcctattgaaacatttttcagcttttagaTC
CTGGGATTCTAAGTCTGCTAACATTTTTGAGGCTGATGCTGAgcaaatga
aattatttttccacACAATCTGTTGTAATTATGTTTCATCCAGATTATTT
ATTATTGTTataatttattcaatttttaatattttgatttttcaggtAAA
TGTCTAACAGACACAACTGATTATCCAAACACAACAGATTCTGGTTCAAA
CTCAGATTCTCAAATTTGGTTCCAAACTGTTCCATTGTCATCAAGTTCtc
caaaaaagacaaaaagaagagTTGGTACGTTGAGCGGAATACCACAGATA
TCATGATTAGCTGCTAGTTATTGCTTTACGAACCAGCTGTTTTAAGAGTT
GGGCAAGGTCCactagtttttttttcttttttggataTGTTTTTTAAAGT
ACAACGAACTGAGtgaaatctcaaaatattttggtctgaaaatccttAAC
AGCGGAtcaatttgtttcattttcatttttttctccattttttagCGAAA
TATCATACAGGCAGTACCGGTGATTCAACGAATTCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001997XLOC_001997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003578-exon-sc0000030-1491911889:841144..842057TCONS_00003578-exon-sc0000030-1491911889:841144..842057Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1510915933:841144..842057TCONS_00003578-exon-sc0000030-1510915933:841144..842057Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1575043694:841144..842057TCONS_00003578-exon-sc0000030-1575043694:841144..842057Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1491911889:842546..842677TCONS_00003578-exon-sc0000030-1491911889:842546..842677Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1510915933:842546..842677TCONS_00003578-exon-sc0000030-1510915933:842546..842677Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1575043694:842546..842677TCONS_00003578-exon-sc0000030-1575043694:842546..842677Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1491911889:843026..843187TCONS_00003578-exon-sc0000030-1491911889:843026..843187Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1510915933:843026..843187TCONS_00003578-exon-sc0000030-1510915933:843026..843187Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1575043694:843026..843187TCONS_00003578-exon-sc0000030-1575043694:843026..843187Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1491911889:843587..843694TCONS_00003578-exon-sc0000030-1491911889:843587..843694Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1510915933:843587..843694TCONS_00003578-exon-sc0000030-1510915933:843587..843694Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1575043694:843587..843694TCONS_00003578-exon-sc0000030-1575043694:843587..843694Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1491911889:844189..844317TCONS_00003578-exon-sc0000030-1491911889:844189..844317Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1510915933:844189..844317TCONS_00003578-exon-sc0000030-1510915933:844189..844317Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1575043694:844189..844317TCONS_00003578-exon-sc0000030-1575043694:844189..844317Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1491911889:844539..844582TCONS_00003578-exon-sc0000030-1491911889:844539..844582Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1510915933:844539..844582TCONS_00003578-exon-sc0000030-1510915933:844539..844582Clytia hemisphaericaexon
TCONS_00003578-exon-sc0000030-1575043694:844539..844582TCONS_00003578-exon-sc0000030-1575043694:844539..844582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:841144..844582 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.234625	0.215269	0.0871471	0.122812	1.09039	0.118827	0	0	0	0	0	0	0	0	0.557818	1.44365	1.72597	1.57057	0.00408993	1.48907	1.02215	0.492636	0.390236	1.51911	0	0	1.06872	1.39187	1.48863	0.00676471
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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