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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003577 ID=TCONS_00003577|Name=TCONS_00003577|organism=Clytia hemisphaerica|type=transcript|length=1426bp
TCTTCACCCCTTTTTACGGTACTAGTAATTTAAGTCTAACCCAAATTCGA
AAAAGATCTTTGGTCTTTTAAAGATCAAACTAGAGAGAGGCTATTGAAta
tgaaattcaaatttcctgGAGCATTGTTTTGGAATTTCGATGTTCTTCTt
tctagatttttaaattttaaataaagcTGATTCCTTTGGATTAGTTCATG
ATGTCGGTTCAGATACACGAATTAGAAGTTCGAATCAAATATTTGAGAGC
AGCCCTTTACAAGATTATGGTTCACTTGCTCAAATTCTGTGTTCGAAATC
ACAAAGATTGCATTACAAGGATGAATCCTGATATCGGATTGGCTGAAATC
ATCAATACACATTTGACTAGATTTCAGAGGAAGAAAGTGTTTCACGCAGA
ACCTGAATACAAGAAATGTTTTTATGATACTGCTGGGAATTTAAAAACAT
TGATAGCAATAGATGGTTTAGAATTGATGGTTGTTTATCATTTAATACAT
ACTTCTTTCATATCTGatatcaacaaaagaaaatgttgtGGACGTTGCAC
TCACCCTTGTTTGACGTGTCCTGGTGTTTGCCAAGCGAAGGCAGATTGTC
TTTTCGGCTCTTGTTCGTCATGCCGCAACTCTAATTGTGAATCTTCATCA
ATGCAACAATTCATCCATATAGTATCTTCACTTCGCCATGGCTATTCACA
TGCTGAGTTTCATTTTTACCGTCGATTCCAGTCTGGAAGAGATGTCTTTA
CTGATTTTCCACGATCAAAAACGTTTGAAGATATTTGGAAAATCGCAAAT
GAGAGCTCAACTAAATGTCTTGATGTTATGTTAAAGGTTGGCTTCTtgaa
tcaaagtcaatttgaTGATTTGAAAATGGAGCTGAGAATAGCTTTACGTA
AAGATATCAAATTCTTATTAGCTGTTGgtgaatctaaaagatATCACAAC
TTTGAAATAATAGCTGTcttatttgcacttttggctgtAATAATCTGGCA
AATCTTTGTTCCTGGATCTTACTTCAGCTTGTTTAGGTGCAGACATGGAC
ATTTGCACCCCATTCGCACCTCAAATTTTACAATGAATCCTTTAGCAGAT
CAATATGCAaatgTCTTCGTGGAAGGCTTGGAATTCAACTTCGAAGATGC
TTTGAAGAAAACAGTCCATCCAAACTACAAGCGACTGAACGAAGGATATC
GTTATTtcgttaatatcaaaagatgtGCTTACGGAAGCATCAAAGAATAT
GTTACATTATTTGGGGAGCGAATCCAAAGAGGTCCTGATATGTTCGCCGT
CGATGAGAATTGTCAGAAGGTTTTCTATTACAATGATGCAAAGGACAGCT
GGACAATCTATAACAGTGCTAAAAATCTAACGTGTAGCTAGTTCAACTTG
TAATGTTTAGTTCAATTTCTATATTT Run BLAST on NCBI protein sequence of TCONS_00003577-protein >TCONS_00003577-protein ID=TCONS_00003577-protein|Name=TCONS_00003577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MMSVQIHELEVRIKYLRAALYKIMVHLLKFCVRNHKDCITRMNPDIGLAE
IINTHLTRFQRKKVFHAEPEYKKCFYDTAGNLKTLIAIDGLELMVVYHLI
HTSFISDINKRKCCGRCTHPCLTCPGVCQAKADCLFGSCSSCRNSNCESS
SMQQFIHIVSSLRHGYSHAEFHFYRRFQSGRDVFTDFPRSKTFEDIWKIA
NESSTKCLDVMLKVGFLNQSQFDDLKMELRIALRKDIKFLLAVGESKRYH
NFEIIAVLFALLAVIIWQIFVPGSYFSLFRCRHGHLHPIRTSNFTMNPLA
DQYANVFVEGLEFNFEDALKKTVHPNYKRLNEGYRYFVNIKRCAYGSIKE
YVTLFGERIQRGPDMFAVDENCQKVFYYNDAKDSWTIYNSAKNLTCS Run BLAST on NCBI transcript from alignment at sc0000030:830250..833359+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003577 ID=TCONS_00003577|Name=TCONS_00003577|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at sc0000030:830250..833359+ (Clytia hemisphaerica)
TCTTCACCCCTTTTTACGGTACTAGTAATTTAAGTCTAACCCAAATTCGA
AAAAGATCTTTGGTCTTTTAAAGATCAAACTAGAGAGAGGCTATTGAAta
tgaaattcaaatttcctgGAGCATTGTTTTGGAATTTCGATGTTCTTCTt
tctagatttttaaattttaaataaagcTGATTCCTTTGGATTAGTTCATG
ATGTCGGTTCAGATACACGAATTAGAAGTTCGAATCAAATATTTGAGAGC
AGCCCTTTACAAGATTATGGTTCACTTGCTCAAATTCTGTGTTCGAAATC
ACAAAGATTGCATTACAAGGATGAATCCTGATATCGGATTGGCTGAAATC
ATCAATACACATTTGACTAGATTTCAGAGGAAGAAAGTGTTTCACGCAGA
ACCTGAATACAAGAAATGTTTTTATGATACTGCTGGGAATTTAAAAACAT
TGATAGCAATAGATGGTTTAGAATTGATGGTTGTTTATCATTTAATACAT
ACTTCTTTCATATCTGatatcaacaaaagaaaatgttgtGGACGTTGCAC
TCACCCTTGTTTGACGTGTCCTGGTGTTTGCCAAGCGAAGGCAGATTGTC
TTTTCGGCTCTTGTTCGTCATGCCGCAACTCTAATTGTGAATCTTCATCA
ATGCAACAATTCATCCATATAGTATCTTCACTTCGCCATGGCTATTCACA
TGCTGAGTTTCATTTTTACCGTCGATTCCAGTCTGGAAGAGATGTCTTTA
CTGATTTTCCACGATCAAAAACGTTTGAAGATATTTGGAAAATCGCAAAT
GAGAGCTCAACTAAATGTCTTGATGTTATGTTAAAGGTTGGCTTCTtgaa
tcaaagtcaatttgaTGATTTGAAAATGGAGCTGAGAATAGCTTTACGTA
AAGATATCAAATTCTTATTAGCTGTTGgtgaatctaaaagatgtaagAAA
TTTTAGCTTAATTtaaacatacacgtttttttataagaactataaaaaac
tatataagaacaaaaagcttcgattgccaaaatgctaagaacatttcaag
gcttagcagactcaaaaacacccggttttttaggaaaatgggtaaaaatg
gtcacaaaatgaagaaaataataacattttgaaaacatattttggcttaa
aacccaaaaagttaagaatacccgaagaatgttcttataagaaacaaaaa
ttcaagAAGGTTTCGTGGactttaaaacacccgatttcttcgaaaaatgg
acaaaaataatcccaaaatggtgaaaataagaaagcttaagactttttta
tagacttaaaactcaataAATTAAGAACAAGAACGAAAACTTCAagatat
tttggatgttcttacaaaaaaacatgtatgtatTTGTTTTATTACAATGT
AACTCTTTGTATGAGCAACAGATTTCTTGTTTCAAAATCTTCATTCAAAC
TGAAGATTCTTTGAATAAAACATGAAACTATCagtattgacaaaaaatat
tcaactaCCATATCACGCTTCCGGTTTGGGTTGATTAAGCGCTCTATTGA
TGAAAAATCATTGcatcaaaaattaattataatTGCCAAACTTTATTGAC
AACGAATAAATTGCTCCCATATCATACTTCGAACTGATTCGGTGAGGATT
TGTagtaatacatgttttttcttccATAAGCATaatgtttataagcatat
gaaggctcagtttttggtacctaaagaatggctctattgtttgagaacaa
tagaatgctaagcataatgcgagcctgatagggacacacttgcttataaa
aacatgaattgggggggggggggggaaaaaaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGG
GGGGGGAGAGAATAAATTCGAAATGATAAATTGTCTCATCTTTTTTTATC
CATAGATCACAACTTTGAAATAATAGCTGTcttatttgcacttttggctg
tAATAATCTGGCAAATCTTTGTTCCTGGATCTTACTTCAGCTTGTTTAGG
TGCAGACATGGACATTTGCACCCCATTCGCACCTCAAATTTTACAATGAA
TCCTTTAGCAGATCAATATGCAGTGAGTtaatttgttattgttttttttg
aaccagaaatattgaaatattgaaaCTTTAAAGAACATACAGGCCTTCTT
ATGATTTGAGCTCACCGAATATGAATATGTTTGCTATAAAAAttcattta
tatatttagaatgTCTTCGTGGAAGGCTTGGAATTCAACTTCGAAGATGC
TTTGAAGAAAACAGTCCATCCAAACTACAAGCGACTGAACGAAGGtgaat
atataatatttttttcatacgTGTCTCCAATTAGTCACAAATAAGCAAAG
TCAAGAACTTTAGTCAACTACCTCTGATTCAACTTTCTACTATTCaaata
tttctgtaattcgaactaaaaataTTTGTCCTCTAAGCTGGAAAGTGGTC
TAGATTACTCACtgtaatttgaatctttttctatttcgaaaaagattttt
gatcctcgaattagagagagacaactgtcccagctggcacacaacgttgt
ttcaacgtttatttcatgttcataacgtccatataacgttagatggacgt
tgaaacaacgttttgtgtcAGCTGAGGGTAGTTCAGTCGGTTTCATGTTA
CGTTTTTTGTGAATTGCCTTTCTTTAAGGATATCGTTATTtcgttaatat
caaaagatgtGCTTACGGAAGCATCAAAGAATATGTTACATTATTTGGGG
AGCGAATCCAAAGAGGTCCTGATATGTTCGCCGTCGATGAGAATTGTCAG
AAGGTTTTCTATTACAATGATGCAAAGGACAGCTGGACAATCTATAACAG
TGCTAAAAATCTAACGTGTAGCTAGTTCAACTTGTAATGTTTAGTTCAAT
TTCTATATTT Coding sequence (CDS) from alignment at sc0000030:830250..833359+ >TCONS_00003577 ID=TCONS_00003577|Name=TCONS_00003577|organism=Clytia hemisphaerica|type=CDS|length=4776bp|location=Sequence derived from alignment at sc0000030:830250..833359+ (Clytia hemisphaerica)
ATGATGTCGGTTCAGATACACGAATTAGAAGTTCGAATCAAATATTTGAG
AGCAGCCCTTTACAAGATTATGGTTCACTTGCTCAAATTCTGTGTTCGAA
ATCACAAAGATTGCATTACAAGGATGAATCCTGATATCGGATTGGCTGAA
ATCATCAATACACATTTGACTAGATTTCAGAGGAAGAAAGTGTTTCACGC
AGAACCTGAATACAAGAAATGTTTTTATGATACTGCTGGGAATTTAAAAA
CATTGATAGCAATAGATGGTTTAGAATTGATGGTTGTTTATCATTTAATA
CATACTTCTTTCATATCTGatatcaacaaaagaaaatgttgtGGACGTTG
CACTCACCCTTGTTTGACGTGTCCTGGTGTTTGCCAAGCGAAGGCAGATT
GTCTTTTCGGCTCTTGTTCGTCATGCCGCAACTCTAATTGTGAATCTTCA
TCAATGCAACAATTCATCCATATAGTATCTTCACTTCGCCATGGCTATTC
ACATGCTGAGTTTCATTTTTACCGTCGATTCCAGTCTGGAAGAGATGTCT
TTACTGATTTTCCACGATCAAAAACGTTTGAAGATATTTGGAAAATCGCA
AATGAGAGCTCAACTAAATGTCTTGATGTTATGTTAAAGGTTGGCTTCTt
gaatcaaagtcaatttgaTGATTTGAAAATGGAGCTGAGAATAGCTTTAC
GTAAAGATATCAAATTCTTATTAGCTGTTGgtgaatctaaaagatATCAC
AACTTTGAAATAATAGCTGTcttatttgcacttttggctgtAATAATCTG
GCAAATCTTTGTTCCTGGATCTTACTTCAGCTTGTTTAGGTGCAGACATG
GACATTTGCACCCCATTCGCACCTCAAATTTTACAATGAATCCTTTAGCA
GATCAATATGCAaatgTCTTCGTGGAAGGCTTGGAATTCAACTTCGAAGA
TGCTTTGAAGAAAACAGTCCATCCAAACTACAAGCGACTGAACGAAGGAT
ATCGTTATTtcgttaatatcaaaagatgtGCTTACGGAAGCATCAAAGAA
TATGTTACATTATTTGGGGAGCGAATCCAAAGAGGTCCTGATATGTTCGC
CGTCGATGAGAATTGTCAGAAGGTTTTCTATTACAATGATGCAAAGGACA
GCTGGACAATCTATAACAGTGCTAAAAATCTAACGTGTAGCTAGATGATG
TCGGTTCAGATACACGAATTAGAAGTTCGAATCAAATATTTGAGAGCAGC
CCTTTACAAGATTATGGTTCACTTGCTCAAATTCTGTGTTCGAAATCACA
AAGATTGCATTACAAGGATGAATCCTGATATCGGATTGGCTGAAATCATC
AATACACATTTGACTAGATTTCAGAGGAAGAAAGTGTTTCACGCAGAACC
TGAATACAAGAAATGTTTTTATGATACTGCTGGGAATTTAAAAACATTGA
TAGCAATAGATGGTTTAGAATTGATGGTTGTTTATCATTTAATACATACT
TCTTTCATATCTGatatcaacaaaagaaaatgttgtGGACGTTGCACTCA
CCCTTGTTTGACGTGTCCTGGTGTTTGCCAAGCGAAGGCAGATTGTCTTT
TCGGCTCTTGTTCGTCATGCCGCAACTCTAATTGTGAATCTTCATCAATG
CAACAATTCATCCATATAGTATCTTCACTTCGCCATGGCTATTCACATGC
TGAGTTTCATTTTTACCGTCGATTCCAGTCTGGAAGAGATGTCTTTACTG
ATTTTCCACGATCAAAAACGTTTGAAGATATTTGGAAAATCGCAAATGAG
AGCTCAACTAAATGTCTTGATGTTATGTTAAAGGTTGGCTTCTtgaatca
aagtcaatttgaTGATTTGAAAATGGAGCTGAGAATAGCTTTACGTAAAG
ATATCAAATTCTTATTAGCTGTTGgtgaatctaaaagatATCACAACTTT
GAAATAATAGCTGTcttatttgcacttttggctgtAATAATCTGGCAAAT
CTTTGTTCCTGGATCTTACTTCAGCTTGTTTAGGTGCAGACATGGACATT
TGCACCCCATTCGCACCTCAAATTTTACAATGAATCCTTTAGCAGATCAA
TATGCAaatgTCTTCGTGGAAGGCTTGGAATTCAACTTCGAAGATGCTTT
GAAGAAAACAGTCCATCCAAACTACAAGCGACTGAACGAAGGATATCGTT
ATTtcgttaatatcaaaagatgtGCTTACGGAAGCATCAAAGAATATGTT
ACATTATTTGGGGAGCGAATCCAAAGAGGTCCTGATATGTTCGCCGTCGA
TGAGAATTGTCAGAAGGTTTTCTATTACAATGATGCAAAGGACAGCTGGA
CAATCTATAACAGTGCTAAAAATCTAACGTGTAGCTAGATGATGTCGGTT
CAGATACACGAATTAGAAGTTCGAATCAAATATTTGAGAGCAGCCCTTTA
CAAGATTATGGTTCACTTGCTCAAATTCTGTGTTCGAAATCACAAAGATT
GCATTACAAGGATGAATCCTGATATCGGATTGGCTGAAATCATCAATACA
CATTTGACTAGATTTCAGAGGAAGAAAGTGTTTCACGCAGAACCTGAATA
CAAGAAATGTTTTTATGATACTGCTGGGAATTTAAAAACATTGATAGCAA
TAGATGGTTTAGAATTGATGGTTGTTTATCATTTAATACATACTTCTTTC
ATATCTGatatcaacaaaagaaaatgttgtGGACGTTGCACTCACCCTTG
TTTGACGTGTCCTGGTGTTTGCCAAGCGAAGGCAGATTGTCTTTTCGGCT
CTTGTTCGTCATGCCGCAACTCTAATTGTGAATCTTCATCAATGCAACAA
TTCATCCATATAGTATCTTCACTTCGCCATGGCTATTCACATGCTGAGTT
TCATTTTTACCGTCGATTCCAGTCTGGAAGAGATGTCTTTACTGATTTTC
CACGATCAAAAACGTTTGAAGATATTTGGAAAATCGCAAATGAGAGCTCA
ACTAAATGTCTTGATGTTATGTTAAAGGTTGGCTTCTtgaatcaaagtca
atttgaTGATTTGAAAATGGAGCTGAGAATAGCTTTACGTAAAGATATCA
AATTCTTATTAGCTGTTGgtgaatctaaaagatATCACAACTTTGAAATA
ATAGCTGTcttatttgcacttttggctgtAATAATCTGGCAAATCTTTGT
TCCTGGATCTTACTTCAGCTTGTTTAGGTGCAGACATGGACATTTGCACC
CCATTCGCACCTCAAATTTTACAATGAATCCTTTAGCAGATCAATATGCA
aatgTCTTCGTGGAAGGCTTGGAATTCAACTTCGAAGATGCTTTGAAGAA
AACAGTCCATCCAAACTACAAGCGACTGAACGAAGGATATCGTTATTtcg
ttaatatcaaaagatgtGCTTACGGAAGCATCAAAGAATATGTTACATTA
TTTGGGGAGCGAATCCAAAGAGGTCCTGATATGTTCGCCGTCGATGAGAA
TTGTCAGAAGGTTTTCTATTACAATGATGCAAAGGACAGCTGGACAATCT
ATAACAGTGCTAAAAATCTAACGTGTAGCTAGATGATGTCGGTTCAGATA
CACGAATTAGAAGTTCGAATCAAATATTTGAGAGCAGCCCTTTACAAGAT
TATGGTTCACTTGCTCAAATTCTGTGTTCGAAATCACAAAGATTGCATTA
CAAGGATGAATCCTGATATCGGATTGGCTGAAATCATCAATACACATTTG
ACTAGATTTCAGAGGAAGAAAGTGTTTCACGCAGAACCTGAATACAAGAA
ATGTTTTTATGATACTGCTGGGAATTTAAAAACATTGATAGCAATAGATG
GTTTAGAATTGATGGTTGTTTATCATTTAATACATACTTCTTTCATATCT
GatatcaacaaaagaaaatgttgtGGACGTTGCACTCACCCTTGTTTGAC
GTGTCCTGGTGTTTGCCAAGCGAAGGCAGATTGTCTTTTCGGCTCTTGTT
CGTCATGCCGCAACTCTAATTGTGAATCTTCATCAATGCAACAATTCATC
CATATAGTATCTTCACTTCGCCATGGCTATTCACATGCTGAGTTTCATTT
TTACCGTCGATTCCAGTCTGGAAGAGATGTCTTTACTGATTTTCCACGAT
CAAAAACGTTTGAAGATATTTGGAAAATCGCAAATGAGAGCTCAACTAAA
TGTCTTGATGTTATGTTAAAGGTTGGCTTCTtgaatcaaagtcaatttga
TGATTTGAAAATGGAGCTGAGAATAGCTTTACGTAAAGATATCAAATTCT
TATTAGCTGTTGgtgaatctaaaagatATCACAACTTTGAAATAATAGCT
GTcttatttgcacttttggctgtAATAATCTGGCAAATCTTTGTTCCTGG
ATCTTACTTCAGCTTGTTTAGGTGCAGACATGGACATTTGCACCCCATTC
GCACCTCAAATTTTACAATGAATCCTTTAGCAGATCAATATGCAaatgTC
TTCGTGGAAGGCTTGGAATTCAACTTCGAAGATGCTTTGAAGAAAACAGT
CCATCCAAACTACAAGCGACTGAACGAAGGATATCGTTATTtcgttaata
tcaaaagatgtGCTTACGGAAGCATCAAAGAATATGTTACATTATTTGGG
GAGCGAATCCAAAGAGGTCCTGATATGTTCGCCGTCGATGAGAATTGTCA
GAAGGTTTTCTATTACAATGATGCAAAGGACAGCTGGACAATCTATAACA
GTGCTAAAAATCTAACGTGTAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003577-exon-sc0000030-1491911889:830250..831191 | TCONS_00003577-exon-sc0000030-1491911889:830250..831191 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1510915933:830250..831191 | TCONS_00003577-exon-sc0000030-1510915933:830250..831191 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1575043694:830250..831191 | TCONS_00003577-exon-sc0000030-1575043694:830250..831191 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1491911889:832355..832521 | TCONS_00003577-exon-sc0000030-1491911889:832355..832521 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1510915933:832355..832521 | TCONS_00003577-exon-sc0000030-1510915933:832355..832521 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1575043694:832355..832521 | TCONS_00003577-exon-sc0000030-1575043694:832355..832521 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1491911889:832659..832743 | TCONS_00003577-exon-sc0000030-1491911889:832659..832743 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1510915933:832659..832743 | TCONS_00003577-exon-sc0000030-1510915933:832659..832743 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1575043694:832659..832743 | TCONS_00003577-exon-sc0000030-1575043694:832659..832743 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1491911889:833128..833359 | TCONS_00003577-exon-sc0000030-1491911889:833128..833359 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1510915933:833128..833359 | TCONS_00003577-exon-sc0000030-1510915933:833128..833359 | Clytia hemisphaerica | exon |
| TCONS_00003577-exon-sc0000030-1575043694:833128..833359 | TCONS_00003577-exon-sc0000030-1575043694:833128..833359 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:830250..833359 + |
Blast
The following BLAST results are available for this feature:
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