TCONS_00003571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003571
Unique NameTCONS_00003571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003571 ID=TCONS_00003571|Name=TCONS_00003571|organism=Clytia hemisphaerica|type=transcript|length=2782bp
ATTAGTATTATGGGTTTTGGTTGTTatccaaataaaatttatttggtGTT
TTAAAGAAtcacaaatttatcaaaaacatgCATTTGAAGATTGTATTGGT
TGTGTTCCTGGCGACTTCCATTAGTTTGGTTGCTTCAGCTCCCAGAAAAA
ATCACCACAAAACGAAAACTACAAAACAACACGAACAGCTGACAGAAACA
GAAGACAACCAAGCCATTGCCAGCGACGAAGGGGAAGAAGTGTCCTCAAC
AGTTGACGATGATGCAAATTCAGCTGATGGCGGATCCACATCGTTGGAGA
GAATTGGATTTCAACAAGAAGTTGTACCTGTGCAACAAACACAACAACAA
GTAGTACAAACGCAACAAAATCCTACAGTCgctcaacaacaaaatcaacA
GAACCTACAACAATACAACAATAATGGCAACACTTCAAGCAACATGTTGA
ATCagtttcaacaacaacaacaaggttTGAGCAGCAATCCCTCTGTTGCT
GCAACACCTATTCTTAACCAACAGAATTCTTTAGCAACCAACTTTgggaa
aactttcaaaaacgttTCGTCAGATTCGACAAAGAAACTCCACATGCTAA
CTGAGAAAGATGAAGAGTTGAAGtgtTTCAACGATTTCGGAAGCAAGATG
AACACAACCAACGGAAAAACAGCCGATAAACTTGTTGAGATATATGAAGG
TCTTCATAAATGTCTGACGAACAGAAAATGTAACTACAAAAAGGCTGAAG
TACTTTTGAAGAACTGCATTACACCACAAAACCCTTATCAGAATTACACC
TGCTACTACACGTGGTATGAACAGATCAAGAAGGACTGTGACCCTAGCCG
TGGCGACGAGAGGCCGAAAGCTGAGAACGCTATCCCTTCAAGAGGTACTT
CTCAATCAAAGTTGGAATTAAAAGATAACATCATAACTCCTAATGACAAA
GCTTCATAGATACTGTAACATTTGGTTAGTCTTGGATATCCCTGAACCTT
GAATTTCGCTCCTTGTAGTCTTATGCCTCtccccagctgacacacaacgt
tgttttaacttttatttaaagctcaaaacgtccatataacgttagatgaa
cgttgaaacaatgttgtgagCCAGCTGGAGAACGTCCAACTGAAATCTTT
GTATGAAGATACTTACTATGTAACTTACGGAGTAAATCGTTTACCCATGT
CACTGGAAGGATCAATTTTCCACCAGCCGACCGAGAAAACACCGACAACC
GCGCAAAAAGACGACGCGAAGACGATATACCATCGATTGTTGTCAGCCAA
CCTTTCGAATCAAGAGCCTCAGAAACTTTATTTGTTCCacagggaaatac
ccaaaataaCATCAACACATCTGAGCTGATCAAACTTGACCGCTTGATTG
ATCGACAAGACCGATATGAGTCACACAAACAATTCTTAAATCGTTGCATC
GAACAGAAAGTTGTCCCTAAGGGACTTCAAATCAATTTAGAACCATCGAT
TGGAAACCATGATCCACAATTTGTAGAACAATGGTATAGTAAACTCAAcg
aattttcttttgtattgATGAAGATGACTGCCGATTTCTGCGAAAAAACA
ACTCCAGAAATTGATGACAAGATCAAAGAAGCTGACGAAGCTATCAAAAC
CAAAACCGAACCAGGTAAATACAGAGAAATTAAAAAAGCGCTTAAAGAAA
ATCAGGATACGCGCAAGAAAACCCTTGATACCaggaaaaacaagaaattt
tacCGATTGAAATACAACGTGGACCAGTCCACTCGCCAAGGCCGATCAGC
CAACGTTACAGCAGAAGATGATGCTCCACCACGACGAAATCGCAGCCGAT
CTAGAAGCAGATCTAACAAACCCTTATACTCTCAAGTTGCTCGCAGAAAC
AACAGCAGAACAAACAACTTCTACCAGAGAAGCAATAACTACACCCAACG
CACAAATAACTTCGCACCAAGAAACAATAATCTAAATCAGTTAACTAATA
ACTACAATCAAAGACCCCCGCGAATCCTGCAAAGGCCACAGCAAAACAAC
GCCCCCGACCGTGACGAGCAAATTGACAAACTGCAGGAACAAATACGTGA
GCTAAGATCACAAAGAACAACAAGATATACACCTGAAGAGCCTGGACCTT
CAAAAAACTACAAGCCTGCCCCTTCTCAAGGGGCACAAAGCACAAACGAT
ATAATAAACCTCATAAACACTACCATGAAAACGTTAAGCGACTTTGCAAC
ACAATTCCAACAACAAGATACGCCACAGACCCCTCAGGGAATGTAGttaa
tctttcaaaacaaaaattcacaaAAGCAGAATACAACCTACTTGGTAAAA
ACCTAAACTTTTGTCCAACACAAGGTAACTACAACAGAACAACGCTACAG
AACGACATAAACGACTTCgcaagaaaaattaaactaaaagcACATTTTGG
AAACGACCCTAATGTAACAATGGCTAAAAAGCCATTctacataaaaaaga
aaaataaccaatGGACACCAAATAACCCACATCACAcagtcaaaactttt
attgacgCCTTTGAAAACGAGATAAATAACCATGAGGTCACAAGAACCAA
ACGCAAATACaatctgaaaaaagaagaacgtGAAGCTTTAGAACAACTAA
GGAGAAAAGAAGACATCATCATCACAAACGCCGATAAAGGAGGCGCCGTA
GTAATCCAAGACGTTGCAGATTATATAAATGAAGCCCTAAGACAACTAAA
CGATCAGACTTTCTACAAGGAGTGTGACCAAG
Run BLAST on NCBI

protein sequence of TCONS_00003571-protein

>TCONS_00003571-protein ID=TCONS_00003571-protein|Name=TCONS_00003571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MHLKIVLVVFLATSISLVASAPRKNHHKTKTTKQHEQLTETEDNQAIASD
EGEEVSSTVDDDANSADGGSTSLERIGFQQEVVPVQQTQQQVVQTQQNPT
VAQQQNQQNLQQYNNNGNTSSNMLNQFQQQQQGLSSNPSVAATPILNQQN
SLATNFGKTFKNVSSDSTKKLHMLTEKDEELKCFNDFGSKMNTTNGKTAD
KLVEIYEGLHKCLTNRKCNYKKAEVLLKNCITPQNPYQNYTCYYTWYEQI
KKDCDPSRGDERPKAENAIPSRGTSQSKLELKDNIITPNDKAS
Run BLAST on NCBI

transcript from alignment at sc0000030:791292..801523+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003571 ID=TCONS_00003571|Name=TCONS_00003571|organism=Clytia hemisphaerica|type=transcript|length=10232bp|location=Sequence derived from alignment at sc0000030:791292..801523+ (Clytia hemisphaerica)
ATTAGTATTATGGGTTTTGGTTGTTatccaaataaaatttatttggtGTT
TTAAAGAAtcacaaatttatcaaaaacatgCATTTGAAGATTGTATTGGT
TGTGTTCCTGGCGACTTCCATTAGTTTGGTTGCTTCAGCTCCCAGAAAAA
GTAAGTATTTTTGTTTATGGTTTTGTTTCTTTGCCAGCTTTGCCAAAAAC
CGTTCGATACATCCTGTAGTTTGCAAGCTTCTCGAGCTTTTTGATTGACT
AGAATCTCAtctgaaagaaaacattgactgaatttttacttttatcatta
ctttttgctgAGTTTAAGTTACAGATtgactagactggagtcgtttataa
tgcgtgttaTACAATAGTATAgacgttatatgataatacgattattgtta
cgggatttagtttgtataaactagaACTGTTCCCTCCGTTacctttttgc
tttatttctactatgtctggtctgaattagtcgtctagcttacTAGACTA
CAGATTGACAAAATTTTAGATTCTTGTTGATTTTTGGACACCATTTTAGA
TCACCACAAAACGAAAACTACAAAACAACACGAACAGCTGACAGAAACAG
AAGACAACCAAGCCATTGCCAGCGACGAAGGGGAAGAAGTGTCCTCAACA
GTTGACGATGATGCAAATTCAGCTGATGGCGGATCCACATCGTTGGAGAG
AATTGGATTTCAACAAGAAGTTGTACCTGTGCAACAAACACAACAACAAG
TAGTACAAACGCAACAAAATCCTACAGTCgctcaacaacaaaatcaacAG
AACCTACAACAATACAACAATAATGGCAACACTTCAAGCAACATGTTGAA
TCagtttcaacaacaacaacaaggttTGAGCAGCAATCCCTCTGTTGCTG
CAACACCTATTCTTAACCAACAGAATTCTTTAGCAACCAACTTTgggaaa
actttcaaaaacgttTCGTCAGATTCGACAAAGAAACTCCACATGCTAAC
TGAGAAAGATGAAGAGTTGAAGGTAAAAGCCCGATTACttaacacccctg
tatcacagacccggtgggatccaagccccactggaaaattttgccaagat
ttcgtccccggtgggaccCTTGCCcaactgagaaattgactttgatttca
tcccggtaaaaaattcaatggggaaaactatcccactggattttttgagc
TGGGAGCACATAGAATCTCTATCCGCACCGTGagaaaagttctaccgggg
ctttgagacaggggtgtatagttCAAGTTCAATCCTTGGATGAAGGTTTT
AAAGAAAACTGATCCAAAGCTTGATGACCCTAAAAGGTATGTGATTCAAA
GCAAGATCAGGGGAATGCTAAGAGGTGTCTTTCAAGGGCgacagtttttg
ttttgaaaaagatcCCGAAAAATAGTTATTACATGACAAAATTTGATAAT
GAGTACCCCGATGATATAgtatacagtcaactctctctaattcgaacctc
tattattcgaatatttctacaattcgaactaaaatatcggtcccctcagc
tggaaagtcgTTTCAATTactctttgtaattcgaatctttctttaattcg
aaagAAATCcctggtcccttgaagatcggaTTAGAGAGGGTCAACTGTAG
GTGCACAATTTTAACACAACTTGCTATTACAAACTAGGAGTTTAAACGGT
TACAGTTGACtcacttattcgaacttctattattcgaatctttttattat
taatttcgcatagcgaaagtattacgatagtcttTCTATGTATGtatcga
gaaaatttttggggcgcaaattatggcgtgggcgtttggctgcgggcgta
ctacggccaatattctaaaggtggactcactcacaaagataaaaagtgat
aaaagacagcgcttttcttaataattaaaatacgctagtgcaagaagtgt
aaccaagcctttgtaaacattcatcttGAGAACTTTTAATGGCTGCtgat
tgcacatgcttttgaaacttgctgctgttgtataaatttttatcatgttt
tctggtcttttggagagtatttaaagaggtttaatatttgtttactacta
agtgttttatgtttgtgtagtttgTGAAtacaccaataaattgatcatgt
cagtaaagtagtacaaaaagagttaattttccacaacaacaacaacatta
accctctcttctcttcttcaccaaaactacaaacagcgcaggtatgatct
tttttcctctttttaccagatagttatgtgttaatagtgaaaccagttgt
gacaaacagtcagttttagcaagtatttcctagaaatcatgtcaattgaa
atttaGCAATCATTTTCGTAATCAAAATGACCCTGGACACATTGACATTG
ACATTGTACGGTGGGTGTACGAAGGATTTCAAAtaacctattttcaccgc
cGTACAAAGTTCAGTGGTCCCACCAGACATCgtacagtcaggcacatcct
ggcaaatgaacggggtgagcatttgcattgggtattcgtcacccagtgta
aatgagataggacgtctcaggctaaaagcttgaaaatgaataaaaatgaa
cttcaaactgaaaaagggaaaaaaggaagaaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNacaaaattgacccatggaaaaaaaatttcatctatgcagttct
ttgaaatgaagcaaaatatttccaacccggttcaattaaactgggtattc
ggcactattacgtcactttcgttttcgaccctgatcatttgccaatggtc
gcaagtgaaaaataccccgttcatttgccaggatgtgcctgactgtcgTA
TGGTGGTGCTTTCCAGGAAGCTTAAATACCCAAATTCCTACtggacattt
agatccagccccactgtacaccaccgcacaatgtacggcggtgtccaggg
cCCTTAATCGAACTGTGGAACTATCCAtcgaaatcaaaccaaaatgatag
ctgttcgattaccgaacctgatttggtaagaaaatcttttgataAGTTTG
ATTATATGATTgtttgacagttttttatctgatgaagtttgattggtgtt
tgatgagtttggttagtaaaagttGAAAGTTCAAGCTTTAGggtgggcgt
ctgctaataagccgtcggaatgttaaaagaatgggcaacaaggtaataaa
tcaaactaattgagcctcaatcaaacttcaccgatcttaatacacctttt
gctaatcaggattttcattttgaatcattagAAACTCCAGTTGTACCGTT
GTTTGTACAGATTGccatttctgcactaagattcttgttacttttctggg
ATCTTTCccctaccgtgagatcgggtaacttgcatcagttaacttgcatc
agtggaggtaAACATGCAtatccctcaaatgaatgacctgtctggtcatt
aaaaaacAANTATCAGTGGAGGTAAACATGCAtatccctcaaatgaatga
tctgtctggtcattaaaatagaaagttaaatcaaaacaaaaatggtagag
tagagctgcaagcagagctgcgtaattgtattttaatgaccagacaggtc
attcatttgagcgctacgcatgttagcctccactgatgcaagttacccaa
tctcacggtatatatttttcacgggataactggcaagagattggggaggg
tttgtttaatggaATGCAGTTTAAAGCTCAACacaaggagtattatttct
ttaaagcttaaaattGGAGCTCAActgctttttgcctttaatgggcTCTT
TCAGAAAATGTCCGGAGGGGGAGGGTTAACTTTCTCCATGGGGTCAACTG
ACTTggccatattcaaatttttctggaaaGGCCAATGATTTTGATGGTGG
GCCATCATTCATaccagaaagcgaagatagtatacaacagatttttctga
ctagccatttttctcatttagataaattctactgtttatagaaagaagtt
CATATAAACTTTGCACTagtgaaagaagtctttatcacaagttccttcaa
agcacaaaatgaggtttctggcatGAAAGAATGAAgagttcatttttttt
cttcattttcaaaagaatttatttcttttctcaagtatattgcagttctc
tgatGCTAAATGCAAATGTAAcgtttcattcaaaatgcataatgttgcag
gagtcacgtttcacgcgtcttcgtcgttgatgttcaaatattatgcgaaa
ttttcgactttaagtcgtcttgttataACTTTTTTCAGTCCCCGTCAAGA
AGAAAGACTCCTAAAATTGTTCTATagttcaaatctttctatagttcaaa
tctttctatagtTCAAATCTCTATGTAGTTCGAACAAATTATATTTCCCG
CTAGacttcgaataagcgagagttagCTGCATTTAATTTTAgccttttta
aaagttttgttcttaaataagagtgatatcgattgcttactcatcaattt
caatatacaaggtttttcacattggattaacatggatgtggagcaagatt
ggtcagaaaagggaaaagaaaaacattttttgcttatatcagcataatat
aacaataggaagacactgtcctgatataaaatatgtgcctgatatgaaac
gggaacacttatacaaaaataaaacctttaataaaaGCTTGAAAAAGTTT
ATTCAGATACgatagttttttctttttctagtgtTTCAACGATTTCGGAA
GCAAGATGAACACAACCAACGGAAAAACAGCCGATAAACTTGTTGAGATA
TATGAAGGTCTTCATAAATGTCTGACGAACAGAAAATGTAACTACAAAAA
GGTAAGAAAAACACTCAAAGCCTCGAAAAATTTGGTGGAAAAATTTGATA
AGCttagaataagaatgtcctgagtggaatatttttgaaaaggaggctaa
tacagcagaattagagcaaaagagggaactttcaaaaatattttcccaaa
aattaataagcggggggagggtaccgtgaaaagcacagctcaaaatcata
tatttacgctgtgccgacgaatcgagattctattcatcgcgcaatcagcg
aagacaaaagtaaccatgacgaccaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNttattaggtacccgagagtacc
cgCCAAGGAACGCTGGTATTGCTGACCAATGTTTCGTATTTTTTCATTGA
CACGGTGATTTTTCGCTAGCTGGGATAAAATACATAGAAACTAAATGTCG
AGGGTGACGGTTGGTGGATGGCGGAGTATCGGTAAATGGAAGAAGCCAGT
TTTTAGATTTGCTTCCCAACAAGAACGAAATTCCATGTATTTTTTACATA
GGATAATCACTACGACGTTTTGTCCAATGAGTAATAGAGTGGTTTAACAA
CAGGGCCCACGACTCAGGGGCCGAAGAGAGGTGTACAAACATACTCAACT
CATAATGTCAGGAGTGAAAAGAAGCAATCTGAATAGAGGCTCCCCAAACA
CTTCTTTTGCTTTCGGACAattcctacacgttttttttataagaaaaaac
tatataagaactaaGGCTTCGAAGGTTCGATGGCCAAACTACcaagaaca
agttaataacattttaaggttttccGGATTCTAAAACATCTaatttctta
tgaaaatggaataaaatattcacaaaatggtgaatttttttggtttaaaa
ctcaaaaaattaagagcatccgaagaattttttaatgttcttataaaaag
cgtgtatttcatAACGCCTCTAATGCCTCTATTTTCCTTCCAGGCTGAAG
TACTTTTGAAGAACTGCATTACACCACAAAACCCTTATCAGAATTACACC
TGCTACTACACGTGGTATGAACAGATCAAGAAGGACTGTGACCCTAGCCG
TGGCGACGAGAGGCCGAAAGCTGAGAACGCTATCCCTTCAAGAGGTACTT
CTCAATCAAAGTTGGAATTAAAAGATAACATCATAACTCCTAATGACAAA
GCTTCATAGATACTGTAACATTTGGTTAGTCTTGGATATCCCTGAACCTT
GAATTTCGCTCCTTGTAGTCTTATGCCTCtccccagctgacacacaacgt
tgttttaacttttatttaaagctcaaaacgtccatataacgttagatgaa
cgttgaaacaatgttgtgagCCAGCTGGAGAACGTCCAACTGAAATCTTT
GTATGAAGATACTTACTATGTAACTTACGGAGTAAATCGTTTACCCATGT
CACTGGAAGGATCAATTTTCCACCAGCCGACCGAGAAAACACCGACAACC
GCGCAAAAAGACGACGCGAAGACGATATACCATCGATTGTTGTCAGCCAA
CCTTTCGAATCAAGAGCCTCAGAAACTTTATTTGTTCCacagggaaatac
ccaaaataaCATCAACACATCTGAGCTGATCAAACTTGACCGCTTGATTG
ATCGACAAGACCGATATGAGTCACACAAACAATTCTTAAATCGTTGCATC
GAACAGAAAGTTGTCCCTAAGGGACTTCAAATCAATTTAGAACCATCGAT
TGGAAACCATGATCCACAATTTGTAGAACAATGGTATAGTAAACTCAAcg
aattttcttttgtattgATGAAGATGACTGCCGATTTCTGCGAAAAAACA
ACTCCAGAAATTGATGACAAGATCAAAGAAGCTGACGAAGCTATCAAAAC
CAAAACCGAACCAGGTAAATACAGAGAAATTAAAAAAGCGCTTAAAGAAA
ATCAGGATACGCGCAAGAAAACCCTTGATACCaggaaaaacaagaaattt
tacCGATTGAAATACAACGTGGACCAGTCCACTCGCCAAGGCCGATCAGC
CAACGTTACAGCAGAAGATGATGCTCCACCACGACGAAATCGCAGCCGAT
CTAGAAGCAGATCTAACAAACCCTTATACTCTCAAGTTGCTCGCAGAAAC
AACAGCAGAACAAACAACTTCTACCAGAGAAGCAATAACTACACCCAACG
CACAAATAACTTCGCACCAAGAAACAATAATCTAAATCAGTTAACTAATA
ACTACAATCAAAGACCCCCGCGAATCCTGCAAAGGCCACAGCAAAACAAC
GCCCCCGACCGTGACGAGCAAATTGACAAACTGCAGGAACAAATACGTGA
GCTAAGATCACAAAGAACAACAAGATATACACCTGAAGAGCCTGGACCTT
CAAAAAACTACAAGCCTGCCCCTTCTCAAGGGGCACAAAGCACAAACGAT
ATAATAAACCTCATAAACACTACCATGAAAACGTTAAGCGACTTTGCAAC
ACAATTCCAACAACAAGATACGCCACAGACCCCTCAGGGAATGTAGttaa
tctttcaaaacaaaaattcacaaAAGCAGAATACAACCTACTTGGTAAAA
ACCTAAACTTTTGTCCAACACAAGGTAACTACAACAGAACAACGCTACAG
AACGACATAAACGACTTCgcaagaaaaattaaactaaaagcACATTTTGG
AAACGACCCTAATGTAACAATGGCTAAAAAGCCATTctacataaaaaaga
aaaataaccaatGGACACCAAATAACCCACATCACAcagtcaaaactttt
attgacgCCTTTGAAAACGAGATAAATAACCATGAGGTCACAAGAACCAA
ACGCAAATACaatctgaaaaaagaagaacgtGAAGCTTTAGAACAACTAA
GGAGAAAAGAAGACATCATCATCACAAACGCCGATAAAGGAGGCGCCGTA
GTAATCCAAGACGTTGCAGATTATATAAATGAAGCCCTAAGACAACTAAA
CGATCAGACTTTCTACAAGGAGTGTGACCAAG

Coding sequence (CDS) from alignment at sc0000030:791292..801523+

>TCONS_00003571 ID=TCONS_00003571|Name=TCONS_00003571|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at sc0000030:791292..801523+ (Clytia hemisphaerica)
atgCATTTGAAGATTGTATTGGTTGTGTTCCTGGCGACTTCCATTAGTTT
GGTTGCTTCAGCTCCCAGAAAAAATCACCACAAAACGAAAACTACAAAAC
AACACGAACAGCTGACAGAAACAGAAGACAACCAAGCCATTGCCAGCGAC
GAAGGGGAAGAAGTGTCCTCAACAGTTGACGATGATGCAAATTCAGCTGA
TGGCGGATCCACATCGTTGGAGAGAATTGGATTTCAACAAGAAGTTGTAC
CTGTGCAACAAACACAACAACAAGTAGTACAAACGCAACAAAATCCTACA
GTCgctcaacaacaaaatcaacAGAACCTACAACAATACAACAATAATGG
CAACACTTCAAGCAACATGTTGAATCagtttcaacaacaacaacaaggtt
TGAGCAGCAATCCCTCTGTTGCTGCAACACCTATTCTTAACCAACAGAAT
TCTTTAGCAACCAACTTTgggaaaactttcaaaaacgttTCGTCAGATTC
GACAAAGAAACTCCACATGCTAACTGAGAAAGATGAAGAGTTGAAGtgtT
TCAACGATTTCGGAAGCAAGATGAACACAACCAACGGAAAAACAGCCGAT
AAACTTGTTGAGATATATGAAGGTCTTCATAAATGTCTGACGAACAGAAA
ATGTAACTACAAAAAGGCTGAAGTACTTTTGAAGAACTGCATTACACCAC
AAAACCCTTATCAGAATTACACCTGCTACTACACGTGGTATGAACAGATC
AAGAAGGACTGTGACCCTAGCCGTGGCGACGAGAGGCCGAAAGCTGAGAA
CGCTATCCCTTCAAGAGGTACTTCTCAATCAAAGTTGGAATTAAAAGATA
ACATCATAACTCCTAATGACAAAGCTTCATAGatgCATTTGAAGATTGTA
TTGGTTGTGTTCCTGGCGACTTCCATTAGTTTGGTTGCTTCAGCTCCCAG
AAAAAATCACCACAAAACGAAAACTACAAAACAACACGAACAGCTGACAG
AAACAGAAGACAACCAAGCCATTGCCAGCGACGAAGGGGAAGAAGTGTCC
TCAACAGTTGACGATGATGCAAATTCAGCTGATGGCGGATCCACATCGTT
GGAGAGAATTGGATTTCAACAAGAAGTTGTACCTGTGCAACAAACACAAC
AACAAGTAGTACAAACGCAACAAAATCCTACAGTCgctcaacaacaaaat
caacAGAACCTACAACAATACAACAATAATGGCAACACTTCAAGCAACAT
GTTGAATCagtttcaacaacaacaacaaggttTGAGCAGCAATCCCTCTG
TTGCTGCAACACCTATTCTTAACCAACAGAATTCTTTAGCAACCAACTTT
gggaaaactttcaaaaacgttTCGTCAGATTCGACAAAGAAACTCCACAT
GCTAACTGAGAAAGATGAAGAGTTGAAGtgtTTCAACGATTTCGGAAGCA
AGATGAACACAACCAACGGAAAAACAGCCGATAAACTTGTTGAGATATAT
GAAGGTCTTCATAAATGTCTGACGAACAGAAAATGTAACTACAAAAAGGC
TGAAGTACTTTTGAAGAACTGCATTACACCACAAAACCCTTATCAGAATT
ACACCTGCTACTACACGTGGTATGAACAGATCAAGAAGGACTGTGACCCT
AGCCGTGGCGACGAGAGGCCGAAAGCTGAGAACGCTATCCCTTCAAGAGG
TACTTCTCAATCAAAGTTGGAATTAAAAGATAACATCATAACTCCTAATG
ACAAAGCTTCATAGatgCATTTGAAGATTGTATTGGTTGTGTTCCTGGCG
ACTTCCATTAGTTTGGTTGCTTCAGCTCCCAGAAAAAATCACCACAAAAC
GAAAACTACAAAACAACACGAACAGCTGACAGAAACAGAAGACAACCAAG
CCATTGCCAGCGACGAAGGGGAAGAAGTGTCCTCAACAGTTGACGATGAT
GCAAATTCAGCTGATGGCGGATCCACATCGTTGGAGAGAATTGGATTTCA
ACAAGAAGTTGTACCTGTGCAACAAACACAACAACAAGTAGTACAAACGC
AACAAAATCCTACAGTCgctcaacaacaaaatcaacAGAACCTACAACAA
TACAACAATAATGGCAACACTTCAAGCAACATGTTGAATCagtttcaaca
acaacaacaaggttTGAGCAGCAATCCCTCTGTTGCTGCAACACCTATTC
TTAACCAACAGAATTCTTTAGCAACCAACTTTgggaaaactttcaaaaac
gttTCGTCAGATTCGACAAAGAAACTCCACATGCTAACTGAGAAAGATGA
AGAGTTGAAGtgtTTCAACGATTTCGGAAGCAAGATGAACACAACCAACG
GAAAAACAGCCGATAAACTTGTTGAGATATATGAAGGTCTTCATAAATGT
CTGACGAACAGAAAATGTAACTACAAAAAGGCTGAAGTACTTTTGAAGAA
CTGCATTACACCACAAAACCCTTATCAGAATTACACCTGCTACTACACGT
GGTATGAACAGATCAAGAAGGACTGTGACCCTAGCCGTGGCGACGAGAGG
CCGAAAGCTGAGAACGCTATCCCTTCAAGAGGTACTTCTCAATCAAAGTT
GGAATTAAAAGATAACATCATAACTCCTAATGACAAAGCTTCATAGatgC
ATTTGAAGATTGTATTGGTTGTGTTCCTGGCGACTTCCATTAGTTTGGTT
GCTTCAGCTCCCAGAAAAAATCACCACAAAACGAAAACTACAAAACAACA
CGAACAGCTGACAGAAACAGAAGACAACCAAGCCATTGCCAGCGACGAAG
GGGAAGAAGTGTCCTCAACAGTTGACGATGATGCAAATTCAGCTGATGGC
GGATCCACATCGTTGGAGAGAATTGGATTTCAACAAGAAGTTGTACCTGT
GCAACAAACACAACAACAAGTAGTACAAACGCAACAAAATCCTACAGTCg
ctcaacaacaaaatcaacAGAACCTACAACAATACAACAATAATGGCAAC
ACTTCAAGCAACATGTTGAATCagtttcaacaacaacaacaaggttTGAG
CAGCAATCCCTCTGTTGCTGCAACACCTATTCTTAACCAACAGAATTCTT
TAGCAACCAACTTTgggaaaactttcaaaaacgttTCGTCAGATTCGACA
AAGAAACTCCACATGCTAACTGAGAAAGATGAAGAGTTGAAGtgtTTCAA
CGATTTCGGAAGCAAGATGAACACAACCAACGGAAAAACAGCCGATAAAC
TTGTTGAGATATATGAAGGTCTTCATAAATGTCTGACGAACAGAAAATGT
AACTACAAAAAGGCTGAAGTACTTTTGAAGAACTGCATTACACCACAAAA
CCCTTATCAGAATTACACCTGCTACTACACGTGGTATGAACAGATCAAGA
AGGACTGTGACCCTAGCCGTGGCGACGAGAGGCCGAAAGCTGAGAACGCT
ATCCCTTCAAGAGGTACTTCTCAATCAAAGTTGGAATTAAAAGATAACAT
CATAACTCCTAATGACAAAGCTTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001994XLOC_001994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003571-exon-sc0000030-1491911889:791292..791441TCONS_00003571-exon-sc0000030-1491911889:791292..791441Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1510915933:791292..791441TCONS_00003571-exon-sc0000030-1510915933:791292..791441Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1575043694:791292..791441TCONS_00003571-exon-sc0000030-1575043694:791292..791441Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1491911889:791841..792313TCONS_00003571-exon-sc0000030-1491911889:791841..792313Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1510915933:791841..792313TCONS_00003571-exon-sc0000030-1510915933:791841..792313Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1575043694:791841..792313TCONS_00003571-exon-sc0000030-1575043694:791841..792313Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1491911889:796173..796292TCONS_00003571-exon-sc0000030-1491911889:796173..796292Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1510915933:796173..796292TCONS_00003571-exon-sc0000030-1510915933:796173..796292Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1575043694:796173..796292TCONS_00003571-exon-sc0000030-1575043694:796173..796292Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1491911889:799485..801523TCONS_00003571-exon-sc0000030-1491911889:799485..801523Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1510915933:799485..801523TCONS_00003571-exon-sc0000030-1510915933:799485..801523Clytia hemisphaericaexon
TCONS_00003571-exon-sc0000030-1575043694:799485..801523TCONS_00003571-exon-sc0000030-1575043694:799485..801523Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003571-proteinTCONS_00003571-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:791292..801523 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137885	0.121391	0.327891	0.137465	0.16444	0.275184	2.915	3.35037	1.34522	0.631412	2.23986	3.31667	3.9686	3.12866	2.64517	7.29747	4.04387	4.78868	0.46338	0.571884	2.52115	2.28981	1.05263	1.663	2.25166	2.90701	0.264743	0.296055	0.103625	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top