TCONS_00003563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003563
Unique NameTCONS_00003563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003563 ID=TCONS_00003563|Name=TCONS_00003563|organism=Clytia hemisphaerica|type=transcript|length=1222bp
TCCACAGTCACAGTTATTCACCAACATTCTTTGACTTTTTCACGGATAAT
TTTCCTCTTGAATTCAGGGCTAGAAGCCTGGTTGAGAAGATCTCGATAGA
CTGGCAAACGTTGGGTCATTTGAAAACACCAACGGTCACGAACCTGTCTC
ACCAAATTGAGATCCACTTCTGTCACCAGTAACCCATCATTGACCCGTGA
TAGACCTGGTGTGCGGCTCCCATTAGGAGCGGCTACGTAACTGGACCcat
aaaaatggccaaaatcatTATGAGCAGGTTTTCCATCGGCCGAAGTGAAC
TCATTCTCAAAATGCTCTGTACCAACACGGTTGATGGCAACTGTAAAGTA
GCAATTAGCAATAGCATGACATCTAGCTTCAATGGGCCATAAAGGCTCAC
TCAATGCACCAATAGTGGCTGATGGGTTGAAGACAATCTCAGCTCCATTC
AAACTATATCCTAACCAATTCAACGGGTGATGTCGACCATAACAGATATT
GATACCAATCATACCAAATTGAGTTTCAAAGACAGGATGGCCAAGCTCAC
TTTCCGAATAATAGGTAGATTCATTAAAATCACCTACTCTCGGGATGTGG
TTCTTACGGCTTTTCCCAATGACACGTCCAAAGTTTGAGATGACAACAGC
AGTATTCCAGATTGTGTCCTGGTGTTCTTCATCTCTTTCCAGAATAGGAG
AAACAATGACCATGTTCCATTTCTTGGCTAATTCTTGTAAAAACAAGGTT
GTAGCACCATTTTCAGCTGACTCAGCAAATTGCATCCAAGGATGTTTCTC
GCGTGTACAAAAAGCAAAAGGCATGGTCCATGCTTCTTGTAAACAAAGCA
CATTGACACCAGATTCCCCAGCAGCGTCAATCATTAATCCCAAACGGTCA
TGCATTGCTTTGATTTGTTCACCAATAGGTGCACTGGTTGGAAGCACAAT
CTTATTTTGGATTGCACCAATACGAACCATTCTTGGAGCTCGTGTAGATT
CTGGTTTTGCTGTCATCTTGTAGCCAACAACTTCAAAATCATTCTTTGAA
GCATTGTCTAAGACATTTTGAGGGATGTCGATTTTTTCACATGGCGAACC
GTATAGGATTCTTTTTACCTCAGCCAAGTCTTCTCCGTCCAATTTGTCTT
CCAAGACTTTCTCCAAGCTGTGGATTTGCTCGTTGGATGCCATCTTATTG
TTTTTCTTACAGATAAACTAAA
Run BLAST on NCBI

transcript from alignment at sc0000030:597055..598644+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003563 ID=TCONS_00003563|Name=TCONS_00003563|organism=Clytia hemisphaerica|type=transcript|length=1590bp|location=Sequence derived from alignment at sc0000030:597055..598644+ (Clytia hemisphaerica)
TCCACAGTCACAGTTATTCACCAACATTCTTTGACTTTTTCACGGATAAT
TTTCCTCTTGAATTCAGGGCTAGAAGCCTGGTTGAGAAGATCTCGATAGA
CTGGCAAACGTTGGGTCATTTGAAAACACCAACGGTCACGAACCTGTCTC
ACCAAATTGAGATCCACTTCTGTCACCAGTAACCCATCATTGACCCGTGA
TAGACCTGGTGTGCGGCTCCCATTAGGAGCGGCTACGTAACTGGACCcat
aaaaatggccaaaatcatTATGAGCAGGTTTTCCATCGGCCGAAGTGAAC
TCATTCTCAAAATGCTCTGTACCAACACGGTTGATGGCAACTGTAAAGTA
GCAATTAGCAATAGCATGACATCTAGCTTCAATGGGCCATAAAGGCTCAC
TCAATGCACCAATAGTGGCTGATGGGTTGAAGACAATCTCAGCTCCATTT
AAACTATATCCTAACCAATTCAACGGGTGATGTCGACCATAACAGATATT
GATACCAATCATACCAAATTGAGTTTCAAAGACAGGATGGCCAAGCTCAC
TTTCCGAATAATAGGTAGATTCATTAAAATCACCTACTCTCGGGATGTGG
TTCTTACGGCTTTTCCCAATGACACGTCCAAAGTTTGAGATGACAACAGC
AGTATTCCNGAAGTGAACTCATTCTCAAAATGCTCTGTACCAACACGGTT
GATGGCAACTGTAAAGTAGCAATTAGCAATAGCATGACATCTAGCTTCAA
TGGGCCATAAAGGCTCACTCAATGCACCAATAGTGGCTGATGGGTTGAAG
ACAATCTCAGCTCCATTCAAACTATATCCTAACCAATTCAACGGGTGATG
TCGACCATAACAGATATTGATACCAATCATACCAAATTGAGTTTCAAAGA
CAGGATGGCCAAGCTCACTTTCCGAATAATAGGTAGATTCATTAAAATCA
CCTACTCTCGGGATGTGGTTCTTACGGCTTTTCCCAATGACACGTCCAAA
GTTTGAGATGACAACAGCAGTATTCCAGATTGTGTCCTGGTGTTCTTCAT
CTCTTTCCAGAATAGGAGAAACAATGACCATGTTCCATTTCTTGGCTAAT
TCTTGTAAAAACAAGGTTGTAGCACCATTTTCAGCTGACTCAGCAAATTG
CATCCAAGGATGTTTCTCGCGTGTACAAAAAGCAAAAGGCATGGTCCATG
CTTCTTGTAAACAAAGCACATTGACACCAGATTCCCCAGCAGCGTCAATC
ATTAATCCCAAACGGTCATGCATTGCTTTGATTTGTTCACCAATAGGTGC
ACTGGTTGGAAGCACAATCTTATTTTGGATTGCACCAATACGAACCATTC
TTGGAGCTCGTGTAGATTCTGGTTTTGCTGTCATCTTGTAGCCAACAACT
TCAAAATCATTCTTTGAAGCATTGTCTAAGACATTTTGAGGGATGTCGAT
TTTTTCACATGGCGAACCGTATAGGATTCTTTTTACCTCAGCCAAGTCTT
CTCCGTCCAATTTGTCTTCCAAGACTTTCTCCAAGCTGTGGATTTGCTCG
TTGGATGCCATCTTATTGTTTTTCTTACAGATAAACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001990XLOC_001990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003563-exon-sc0000030-1491911889:597055..597424TCONS_00003563-exon-sc0000030-1491911889:597055..597424Clytia hemisphaericaexon
TCONS_00003563-exon-sc0000030-1510915933:597055..597424TCONS_00003563-exon-sc0000030-1510915933:597055..597424Clytia hemisphaericaexon
TCONS_00003563-exon-sc0000030-1575043694:597055..597424TCONS_00003563-exon-sc0000030-1575043694:597055..597424Clytia hemisphaericaexon
TCONS_00003563-exon-sc0000030-1491911889:597793..598644TCONS_00003563-exon-sc0000030-1491911889:597793..598644Clytia hemisphaericaexon
TCONS_00003563-exon-sc0000030-1510915933:597793..598644TCONS_00003563-exon-sc0000030-1510915933:597793..598644Clytia hemisphaericaexon
TCONS_00003563-exon-sc0000030-1575043694:597793..598644TCONS_00003563-exon-sc0000030-1575043694:597793..598644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:597055..598644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.827488	0.461381	1.349	1.38292	36.0406	26.73	39.662	41.6093	52.4931	46.4997	43.5488	60.2796	42.9076	45.0428	92.8255	84.225	79.2243	76.8748	56.913	61.7677	62.1352	58.1149	227.402	331.539	265.265	242.173	1348.37	1096.4	43.6086	38.8298
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003010C-N_Hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Vocabulary: Biological Process
TermDefinition
GO:0006807nitrogen compound metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006807 nitrogen compound metabolic process
molecular_function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Blast
[Close]
BLAST of TCONS_00003563 vs. Swiss-Prot (Human)
Match: BUP1 (Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1)

HSP 1 Score: 515.768 bits (1327), Expect = 0.000e+0
Identity = 243/377 (64.46%), Postives = 288/377 (76.39%), Query Frame = -3 
Query:   39 SLEKVLEDKLDGEDLAEVKRILYGSPCEKIDIPQNVLDNASKNDFEVVGYKMTAKPESTRAPRMVRIGAIQNKIVLPTSAPIGEQIKAMHDRLGLMIDAAGESGVNVLCLQEAWTMPFAFCTREKHPWMQFAESAENGATTLFLQELAKKWNMVIVSPILERDEEHQDTIWNTAVVISNFGRVIGKSRKNHIPRVGDFNESTYYSESELGHPVFETQFGMIGINICYGRHHPLNWLGYSLNGAEIVFNPSATIGALSEPLWPIEARCHAIANCYFTVAINRVGTEHFENEFTSADGKPAHNDFGHFYGSSYVAAPNGSRTPGLSRVNDGLLVTEVDLNLVRQVRDRWCFQMTQRLPVYRDLLNQASSPEFKRKIIRE 1169
            SLE+ LE  L   DL EVKR+LYG    K+D+P+   + AS+ DFE+ GY   A  E  R PR+V +G +QN+I LP +AP+ EQ+ A+H R+  +++ A   GVN++C QEAWTMPFAFCTREK PW +FAESAE+G TT F Q+LAK  +MV+VSPILERD EH D +WNTAVVISN G V+GK+RKNHIPRVGDFNESTYY E  LGHPVF+TQFG I +NICYGRHHPLNWL YS+NGAEI+FNPSATIGALSE LWPIEAR  AIAN  FT AINRVGTEHF NEFTS DGK AH DFG+FYGSSYVAAP+ SRTPGLSR  DGLLV ++DLNL +QV D W F+MT R  +Y   L +A    +   I++E
Sbjct:    8 SLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEAAEEQLRRPRIVHVGLVQNRIPLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLDLNLCQQVNDVWNFKMTGRYEMYARELAEAVKSNYSPTIVKE 384
The following BLAST results are available for this feature:
BLAST of TCONS_00003563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BUP10.000e+064.46Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1... [more]
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