TCONS_00003559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003559
Unique NameTCONS_00003559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003559 ID=TCONS_00003559|Name=TCONS_00003559|organism=Clytia hemisphaerica|type=transcript|length=182bp
CGGTATATAATGACATAAAAAGGAGGGATACCGTGAAAGTGCAGAATAGT
GTACAAGAACCACTGGATGAACCGATAATCGAGATCGTTCTCAGGTAGAC
ATTACCCTTAATTGTCAACTTGACTAAAACATGGCAGGAAAATCATTTAT
TCACCATCGAAGCGCTAAGAATTATGCACCCG
Run BLAST on NCBI

transcript from alignment at sc0000030:523455..523850+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003559 ID=TCONS_00003559|Name=TCONS_00003559|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0000030:523455..523850+ (Clytia hemisphaerica)
CGGTATATAATGACATAAAAAGGAGGGATACCGTGAAAGTGCAGAATAGT
GTACAAGTAAGTACTCCctaataatttttcgaaaattttccacccaggac
atttttattaccccccccccgcttattaagttttgagattaacGTTAACT
GTAAATTTCTTTACATGTCTAATAAATATTCGATGGGTTTGATTGTGCTT
TCTATCTAAAGAGCTAACGTAATGGAAGCCCTGAATACACCTATTTTTAT
TCATTCGTTGTCTTTTATAGGAACCACTGGATGAACCGATAATCGAGATC
GTTCTCAGGTAGACATTACCCTTAATTGTCAACTTGACTAAAACATGGCA
GGAAAATCATTTATTCACCATCGAAGCGCTAAGAATTATGCACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001987XLOC_001987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003559-exon-sc0000030-1491911889:523455..523510TCONS_00003559-exon-sc0000030-1491911889:523455..523510Clytia hemisphaericaexon
TCONS_00003559-exon-sc0000030-1510915933:523455..523510TCONS_00003559-exon-sc0000030-1510915933:523455..523510Clytia hemisphaericaexon
TCONS_00003559-exon-sc0000030-1575043694:523455..523510TCONS_00003559-exon-sc0000030-1575043694:523455..523510Clytia hemisphaericaexon
TCONS_00003559-exon-sc0000030-1491911889:523725..523850TCONS_00003559-exon-sc0000030-1491911889:523725..523850Clytia hemisphaericaexon
TCONS_00003559-exon-sc0000030-1510915933:523725..523850TCONS_00003559-exon-sc0000030-1510915933:523725..523850Clytia hemisphaericaexon
TCONS_00003559-exon-sc0000030-1575043694:523725..523850TCONS_00003559-exon-sc0000030-1575043694:523725..523850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:523455..523850 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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