TCONS_00003555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003555
Unique NameTCONS_00003555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003555 ID=TCONS_00003555|Name=TCONS_00003555|organism=Clytia hemisphaerica|type=transcript|length=1983bp
AAACCAATAGACAACAACAAACAGAAGCAAACAAAACACTAATCAGACTT
GAAAATGGCAAAGAATACAAATAATCGAAAGCAAATGGCAGTTCACGTTG
TTACAAAGCCAGAAGAAGAATTGGAGTTTTATGTTGATAAAAACATCAAA
GGCcaagaattgtttgatttggtttgTAAGGTGATTGGTTTGagagaaaa
ttattattttggtTTGCATTATGAATGTCCGAATCAACAACCTCTCTGGT
TAAGAATGGACAAGAAGGTCAGGAGTGAACTTGGAGAACAAAACATGAGC
AATATCAAACTTTATCTTCAAGTGCAATTTTATCCCATTGATGTTGATAC
TGGTATCATTATGGAACAAACTACTCATCTATTCTTTCTTCACGTCAAAT
CTGAGATTCTCAGCGAAAGTATATACTGCCCAACTGAGGAATCGATCTTA
TTAGCATCTTATGCTGTCCAAGCTAAGTATGGTGATTTTGATTCAGACat
tcataaaaaacattttctggcAAATGACCAACTGCTACCTCAAAGAGTGT
TAGCGCAATACAAATTAAGCGCTGATGAGTGGGAGGAAAGAATTGTCAAG
TGGTATTCACAACATTGTCAAGGTCTTTCAAGATATCAAGCTGAGATGGA
GTACCTCAAAACAGCACAAAATCTCGAGATGTATGGCATTGGATATTTTA
GGATCCAGATTTGGATACAACCGATGGATAAGGAAGTACAAGATTTTCAT
TTCGTCTCGTTAGATGTCGCGATCAATAGAAAGATTTTGTTGCTAAGCAG
TGGTAACCATGACCTGTACATGCGCAGTAAGAAAGAAGATACAATGGAAA
TCCAGATAATGAAATCACAAGCGCAAGATGCCAGGGAGCAGAGACATAGG
GAACAAAATCGGTTGTACAAAGAGATTCGACGTCGGATAGAAGAAACACA
GGCAAGGATCGATATGGAGAAACGACTGAAAGATTACAGTGGTCTCATTG
ATGAATACAGGAAACATTTGCAAAAAGCGGAAGAAACGACCGACCTTTTG
GCGGAGAAAGCCCTCGTGGCGGAAGAAGAGgcgaaattacttttaaagaa
agCAGCCGATTTTGAAACGGAAATCAAATCGTTACGACATGTTTGCAATC
AAaaagATGAAGAGAAAACATACTTAGAGTCACACATTCAATCTGCTCAA
ATCAACATCCAACAAATCCTACACGAATCCAACCGaagAGCTCAAGAAAC
TGTACTATTAAAACAAGAATTAGACAAATCTCGGCACTCTGAAAAGATGG
CCACTGAAAAACTGATACAAATATCCAACAACTACCAAAGGGCTCCTCCG
ATCCAATATTCATCATACGCCCAACACCAACAACCGCCCCAACTTCAGAA
AGTGCAACAGCAGCCTACACAACACGTGCAAGGTCCTCAACAAGTTTCAC
AATCACATCTGCATTACGGAGGAGCGCCTAATTATGTGGGCGGTGACGGA
GAAGATTTCACAATGTCCGTACAACTTGAGAGGGTTGAGTACTTGGAGAA
AAGCAGACATCTCGAACGACAACTCACCGAATTGAAAACTGAAATTGAAG
GATTAAAAGTAGCTGGCAACCCTGATATTCTGGATCGAATTCATCTCGAA
AGTGTTGGAAAAGGAGAGACTAAATTCTCAACTATGCAAAAGcttcAAGC
GGCTTCAACGAACTCTCGTGTTCAAGTTTATCAAAGATTATAAAACAACT
CCAGCATTTAGTCTAACcatcttatttttaaaattttgatcaccCCTGTC
TCGAAAagaccatagtccgtataagaAACCACAGTCTGGGTAGActgagt
cgtttataatgcgtgtaatactaataatacgggatttagtttgtataaac
taaaattgttcccttcattactttttgctttatttctactatgtataaat
tagtcgtctaggtTGCTAGACTACGGTCTGGGa
Run BLAST on NCBI

transcript from alignment at sc0000030:300001..310932+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003555 ID=TCONS_00003555|Name=TCONS_00003555|organism=Clytia hemisphaerica|type=transcript|length=10932bp|location=Sequence derived from alignment at sc0000030:300001..310932+ (Clytia hemisphaerica)
AAACCAATAGACAACAACAAACAGAAGCAAACAAAACACTAATCAGACTT GAAAATGGCAAAGAATACAAATAATCGAAAGCAAATGGCAGTTCACGTTG TTACAAAGCCAGAAGAAGAATTGGAGTTTTATGTTGATGTAAGAcacttt aatttcatttttctttttggacctaccccggtggggtggaggtcctataa attaacctttgttcgttgGTTTGTTGGTtggttcgttcgttattagcttt cctcctgattggctcattagttgtttcaggttttttgcacaaagatgtaa atacaatgttcttagttaaattactcaattttttttttgagatagatgtt tttttttgctcaagagggcttacttttgaagaatgtgtgtgtttagacat gaaattttggttgcttggcgtgtttttatagaaaaactggccaaatccga tatttatttataagcacattatcaattacttaggtattagcttttctcaa gattggctctttgattttttgcacaaagatgcataactataaaccctcgg aTGTGACAGAAAccgactttcaaaaaaaaatttggggcgcaaatttgggc caaaaaacggctaaaaaatgtttttttttggactttgtgaaaaattggat cattaactttttctgattttttgcatgaaagtagggttaccatcataggt aaaagatggctcaagtagattttttcaaaaaaactttgttAGCTCATAAA ACGCTTGGCTCATGTTTATCTATAATCTATTAttgataagcatacatcaa tgttcttagccaattcaatcaattttttaatgagatagatgtttttttgc tcacaaaatcttgaatatgaaagaatatttcaagagcatgaaattttggt ttctataaacgtttttttataagaaacaaacgactaattttaatagatcg tcactatttgtgttctgaatgattgtttaatgatcacgctcacgtagata ccaattatatatgtgttaaatgcataaccaggtaggtccataaaagtatc acttgtgaAATTTGCTTTATAGTTGAGGGCTAAGCCTGGGGTcctgtgac atcttttttacgacctagccatttttagtctattccaaaaaacaatatat tacaagatatttttgagagggaagATGTGGATTAGGCCCGGTAAAAcgtt ttatgaccaaaatagtgacgctaTATGCAAAACTGCAAGagaaaataagg ggtagagaaatggctgattttcaaaagtcaaaataaaagaagaagattgG TTGTATATGTTTTAAtacaaaattaatgaaaaacttGCCTGTGAGTATAt gatatatggtgaagatcagagatctgacctcaaggagagagagtgttgaa aatactaaataaaataaagatgaaacataataaggcactaatatttttat aattatatataTAATTACCTCACAAATATGAACCGTTTGTGTCCTTTTCC TTTAGAAAAACATCAAAGGCcaagaattgtttgatttggtttgTAAGGTG ATTGGTTTGagagaaaattattattttggtTTGCATTATGAATGTCCGAA TCAACAACCTCTCTGGTTAAGAATGGACAAGAAGGTATAATTCATGATGT GTTAGCTCAAGGATTTTAAACCTTATAACCAACTTCAACAGTCTTGGAAt ccctgaaaatgaaaaaaattagaacTCTGTTTGTGAAGTTTCCTAAAAGT CAGTTTTGGAATTTTGTGACACACACAAAAAACTTGAAGTAATGAATTTG ACATTCTACATTGCTTTCATCTAAACCAAGAAACTGTGGAAATTTATATG TTCCATAGATAATTTGTTTAACTGTTTCTTTTGATAGGTCAGGAGTGAAC TTGGAGAACAAAACATGAGCAATATCAAACTTTATCTTCAAGTGCAATTT TATCCCATTGATGTTGATACTGGTATCATTATGGAACAAACTACTCATCT ATTCTTTCTTCACGTCAAATCTGAGATTCTCAGCGAAAGTATATACTGCC CAACTGAGGAATCGATCTTATTAGCATCTTATGCTGTCCAAGCTAAGGTT ACtttcaaaaagttgattttctttgaaCTATTTTTGTCATTTGTCCCAAG TTGATTCTTCCATTGCAAAATGTAACATTTTGATAAGGCAAACGCATTAA CTTTTTTAACTTCTTCtccaatttttggaaattttttctttgtgccAGCC AGGCTGATTTTGATTACAATGATCCAATctctttttttatcttattCCAT ACAATTCGTTTACTTTTATTGTTTTTAGTATGGTGATTTTGATTCAGACa ttcataaaaaacattttctggcAAATGACCAACTGCTACCTCAAAGAGta ggattgttttttcaatCATAAGATTTGGGATAGTGTTTTTTGCTTTCAAC TATGAACTATCCTCAGCTGAGGTTTTGTCAAAGCAAACTGAGTTGAAATG AATTGTAACTTACAAGCTTCAAAGTTTCTCATGTACTTCCACACCTTTCA ACATATAGATAGGCCTAAAAGTTATCAAAGTTAAAAGTTGCAGTGGTCAT GGTGTAAAAGAAAGACACTGAAACATCAAGAATgcatgaaatgaaatttt tagttttcacttcTATTGCATTGAAACTTTTTATTGTTACAGTCTGTTAC ATAACCCATataattatttcttttgttcttattCAGGTGTTAGCGCAATA CAAATTAAGCGCTGATGAGTGGGAGGAAAGAATTGTCAAGTGGTATTCAC AACATTGTCAAGGTCTTTCAAGGTATCTATCTAATTGCTAAAGTCCTTTA TATGTTCGTTGTGATTTCCACAGAAATTGAGCTGGTCTATTCTTCCAGGT GTATTTTGCCATCTAAgaccatattattattattattattaacatgaaaa tttcaaggttTGTGTAGCCTGAGACAACTCCAGCACAAAAGCCATTTAAG ATGCTTAgttgaaattcatttttgtcATTTAATAATAGATATCAAGCTGA GATGGAGTACCTCAAAACAGCACAAAATCTCGAGATGTATGGCATTGGAT ATTTTAGGATCCAGGTTggttaaagtttttatttttacattacTGTTCCT GTATCATATCAGACAaaatgtttcatatcaggactgCCTAttttatattg tgctgatagaagcaaaataatgtttttcttttccttctttctgaccaatc ttgctatagatccgtgtcaattcaatatcaaaaacctTTTCTCTTTGACT TAGATAAAGCAAGTCCTCACTGCAAAATCTTGTGctttttctgaaagaaa ttactttatttacatgaaaataaatatggaagtatttaacgaccttgaaa tttgcacgatctgaaattaacacgaatttttctgcaaggacaccacggct ggttttaattaagggggtttttatttacacgaaattttcaattcgtgtta aatacttccatatttattttcatgtaataaggtaggTGAAAGCCGATTCG CGAAAATTCGCTACgcgaaatttttagattctCAATTCGACaagaaaatt aatccacttttAAGGCAAATATTCTGATTGTTGTTTATATTCATAGAATG AACTTGGAACAGAACTATGGCTCGGTATACACGCTACTGGGATAAATATT TACGAATCGGACAATCAGCTCATTCCTAAAGTCTCCTTTCTATGGACAGA AATAAAGAATATTAGCTTCAAAAATAAACAAGTAAGCAATGTTCAAGTTG CTCTAATAATGAATCCTAATGGTCAAACAATAAATCTTATAAAGTTGGTC CAACAGAAAGTCATATCATTGGAGTCAATATGACCATGAAATGGACTATG GATATGTCACAGTCCTGTGAGctattactttaatcgtagaaattttagcg agactaatttaagcgttttagcgagttttcccaattttcgctaaaataaa tctcgctaaaacaacCCGAATCGACAggtcgctaaaatttatccgcgcga caTTTCTGGTtatatattgccttgatacatttttatcaacaggaagggtt tcagtgcaaagaaatgctagaaaacgaattcagtcaataatataatatga gtattcgctaaaatttatccacgcgaaattttttgaaatcgtgattcgct aaaataaatctaaaaaaaaatcaagattttcctgactcgctaatatacgc taaaattagtctcgctaaaatttccaCGATCCTTTGCTCGGAAGAATCAG TcttgattttatatttttatggaATCTTTTATCGGATTTGAAAAGCTTGC ATTgggtttttcaagaaaatattcGTACCTGGGGAGGAGGTttggtggag gatatagtgtctggGGGtaatgaaaaatctacaaaatttttcttgtccgg gggtaaacttgctctgtttgggggtaactttgctctgtttgagggtaatc tTGAATGTCGAGGGGGTAAACTGATGCTTTTCCGGGGGTTAGACCTACCG TCCGGGCGGAGAATTTCCAAAAACGTCATATCCTCCGCCCCTCATGCTTa atttctttctggaaaagcccactGTACTTAAAATACTGAGCTCAATGTAA TAACCCAAAGACTACTTGTTTCGTTTGTGTTCTTACAGATTTGGATACAA CCGATGGATAAGGAAGTACAAGATTTTCATTTCGTCTCGTTAGATGTCGC GATCAATAGAAAGGTTCGCTTCTTTTCCTTTCATACTTGTAGTGATTTCT ACTACTTGCCATGAATAACCAAAAATTAATTCGATACTTTAAATTATATG ATATAGTCCGCTCACATTTGTTGATTAATTGTAAATCAATTTCTACACGT GAATGACTACTTAagactcaaaatttttttgctactaTTATTAAGATCGG CGATTATTTTTTAACTATGGTTGTAAAAAGTGATTTTGAGTATACACTGA TACTGCTTGATACAGTCTTCCTACAAAATATTATTTACCTTGGAtaagaa tttcattcaattcTTTTCTCAGATTTTGTTGCTAAGCAGTGGTAACCATG ACCTGTACATGCGCAGTAAGAAAGAAGATACAATGGAAATCCAGATAATG AAATCACAAGCGCAAGATGCCAGGGAGCAGAGACATGTATGTTCTGATTT ATTAACATCACTTTAGTTTCTCGTCACCTTTCGTCACTACGAAAGACGAA TCCTCAAATTCTAAGTGTAATATTTTACTGTTTCGGGAGCTAACGGCTAA CGTTAGTTTGTCTTATCGCTTGAGATTCCTAAATACACACTTCTCGAGAT AAATCAACAGCATTGCGGGCCTCGTTTCCAAATGGAATTATTTCTTCGAA CGACATTAACATAATGTTTTCCCAAAAGAGAGTTTAATAACTGTGCCACG gtcctttttttaaagtttgcttaagaaaatcgctagttcaaactttaaag actTATATCTccagatctagaaggagttagaagctcgttgatagttcgtt ggatagcttagagtctcttctttttttttcgagaAGAGCGTAACCATTGC AATTGTAAACTAGGGCAAATGCGAAATATTATTGAAATAGTATAAGTTTA TCACAATGGGAAACCTTTAAAGGAGTTTTCTGTTTGTAATGGGATTTTCT TAGAGTCTCTTTTCATAATAAGCGACCGTGCCTTGTAACttatttgaaaa tcgaattgtCTTTTATAAACCCATTTATAGAGGGGACAGAATCGGGCCCG TGCCTTGTAACTCATTAAAAAATCGAATGCTCTTTAACCCATTTATAGAG GGAACAGAATCAGGACCTTGCCTTGTAACTCATTTGAAAATCGAATACTC TTTTAACTTCTTTATAGAGGGAACAGAATCGGGCCCGTGCCTTGTAACtc atttgaaaatcgaattttcttttaaaaacgcATTTATAGAGGGGACAGAG TCGGGCCCGTGCCTAGTAACtcatttgaaaatcgaattttcttttaagaa ccCATTTATAGAGAGAACAGAATCGGGCCCGTGGTTAGTAACTCATTTGA AAATCGAATGCTTTTAAAAACCCATTTATAGAGGGAACAAAATCGGTTGT ACAAAGAGATTCGACGTCGGATAGAAGAAACACAGGCAAGGATCGATATG GAGAAACGACTGAAAGATTACAGTGGTCTCATTGATGAATACAGGAAACA TTTGGTGAGAActtcttgactttttctttgctttCCTTTTTTCCCACTGA TCTTTCTTTATTgtacttttccaaaatttccaaaaatgaaaaaaatctaa gtttcaaactattggacctgTCCCAAACTACCCCATTCTAAGACTGGCTC TTAAGGTGTCGTGGTATCCTCATGTTATCAAAATTCAAGAGTAGACAGAA AGTCAAACTTCGTGAATCTTTTTATCAGTACAGTtcgctctctctaattc gatcttcaagagaccaaaaattttattaaaattagagatagatttgaatt acagagagtgATTAAAAAACCATTTCCAGCTGATagaaccaatattttag tttaaattagagaaagattcgaataatagagatttGAATTAGAGGGAGTC GACTGTATTCCACTAACCTTAACCTCTATTCATATGATTTGTATCTTCTA TTATCAGCTTTCTGACAGTtgctgatagcgctagatattctctggcgtct atcagtaacgtaaataaagcctgggatataCGGGGACGAGGTTAAATGAA GTActatttgttgttgttgttttttgtctTCCAAAATGTTAAGTTTTATA AATCTTCTGTTTCAGCAAAAAGCGGAAGAAACGACCGACCTTTTGGCGGA GAAAGCCCTCGTGGCGGAAGAAGAGgcgaaattacttttaaagaaagCAG CCGATTTTGAAACGGAAATCAAATCGTTACGACATGTTTGCAATCAAGTA TGCtcaccttaagtggattaaatttcgcttGGATTATTaatcttgcaaat tttggccattttcgcgaaaattagtcctcacgaaaaattttaaatccgAA ATgggattttccagaaaaaacttttacccccactgttgaggatattgatt tttcaaagtatcGAACCACCGATATcttactttattagtaaagatatcct ctcttataaagatgcttaatcccctggatatcgtattttttaattgaaaa gacacttaaccccttggatatccactcccttgtagatattcacccccctg gatatccacttttgaacaaaaatatttaaccccctggatatccgatatcc tcaacagagGGGGGCATggactatttttggaaaagtccATTTTGGCCAAA TCCCCTAGGAAATATAGAAAGAAGTTAGGTGAAAAAAAGAGGTCGATTCG CGAACTTGTGTCCACGTGAAAACTTTGGATTCTCAATCCACGAAAAAAAA GTCCATGCGAAAATTATTTCCCATTAAAAGGTACTTTTTTGTAACGGTTT TTGTCTTTCAGATCCTTGTTTTAAGCAATGCAGATAATATTCAATTAGCT TTTTAATATTAGCAAATAAGACCCCTTCTCAGCCCTTTTAGAAAAAGGTG AAGCAAATTATGCCAAACTTCAGAGATTTTCTATTGATTATCAATTGCGA GATGAGCGTCCCTCTATTTGGAGATGACTAAAGCGTAGACTTTGCCTTAG GAGGTTTCTTTCTTCCTCGCTAAATTAAGAACAGACTGACTGGACATTTA GAGTCGaaattttacgtggatagcccagtaatctaggactttaaGGTAGT CGTTCGATTGTTTTTAAGGGTTCCACGGCCAGcaggctcggctatctatg aactgaacggaacgtTGGAAGGGGTTGGGATTCGAACCATGAAATCCTGA CTTGAGACACTGACGCCTTTGACAACTTAGCCATCACTCTATCACTCCTg tattatttctttttcagaaagATGAAGAGAAAACATACTTAGAGTCACAC ATTCAATCTGCTCAAATCAACATCCAACAAATCCTACACGAATCCAACCG aaggtaccttaagggaactaattttggcaggaactaattttggcggattt agacgaaattcgccaaaattagttcccgccaaaatttaaaaatttcgcta ttcgccaaaataagttcccgccaaaattaattttttttgttttttgctta aatgaaccctgaaattcatcaaagttgctcaaaataaggtaaggcaacct tgcgaaccgtagtcggatgctctaccactgcgcCACGGTTCGCTTGCGAC GAAAGTACACTCCTGACCAGGGAACGGTTAATGGTCAATggtaaaataat tttcagtatGATTAGgacattgtattttttttcgttttacaGAGCTCAAG AAACTGTACTATTAAAACAAGAATTAGACAAATCTCGGCACTCTGAAAAG ATGGCCACTGAAAAACTGATACAAATATCCAACAACTACCAAAGGGTAAG CATTCTTGGcctttttacattgaatttaaGGATctaattttagcgggaac taattttagcgggaactaattttcgtggtcaagaaaaatttaaaaaaatt gcgtTTCGCGGGAATTTTCTAgggatatttcaaattttttgatgaaaaat agccAAATATGTAATTTGCGGGTTCTAATTTTCACAGTTTTACCGAGAAA ATgcgaaaaaagcgaaaatttaGTCCCTTCTTAATTTTGAACAGCATTGT AGAGTATATCATCTCGAAGCTACAATCGAATCCGTAGACATTTTGATCAC TTTGTGATTGATTGAATGTTTCTTGACCGCGAAAATTAGATAGACAAGCC GGAAGAAATGATCAAAACCGCTTGGCGACGAGAATTGGTAAGGAAAATTT TTAGCCAAGTTATATATTTCTAACCCAATGTTTCGCTTTTTTAAAATACC AGGCTCCTCCGATCCAATATTCATCATACGCCCAACACCAACAACCGCCC CAACTTCAGAAAGTGCAACAGCAGCCTACACAACACGTGCAAGGTCCTCA ACAAGTTTCACAATCACATCTGCATTACGGAGGAGCGCCTAATTATGTGG GCGGTGACGGAGAAGATTTCACAATGTCCGTACAACTTGAGAGGTAGGGA TTGGAAATTCTTTTCCCCGTACAGACCGGACGCTATTTTTATGGATTCTA TTACGTTAACCCCATCAAATTTTGAAGACAGACAAGGTTtctaccattga gtttcaagcccgaaaggctagaggcgagactccgggaaatgaaaccattt accttaaaggaagaaattttggcgagaatttaatttggcggatggacaaa aaagttttttcagagggaatttaatttggcggatggacgaaaaaactaaa tttggcgggaatttaatttggcggtcgcttaaaaatttaaccttaNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaaaatgtt taatttggcgggaatttaatttggcggatggcggaaaaaagaaattttgg cgggaacttaatttggcggatttcagccaaatccgccaaattctctttcc gccaaaatttcttcttttaaggtatttcccatccagaacgcccgcgcgta gtttttacacaaacgccggattgaaactaaaatctatcactagatttgaa aaagtgtagtcctccaaaacaaaggaaccgctagatacaatctgtcgtca tgattacggcgcgttctatgcgcgttttggatatGAAATAAGTGATTtca gcccttcgggcttgaaactcaaaggTTTCTACTGAGGTCTTTCAGAAAAG ATGGCAGAATATTTTTACTTCACCTGTCTGTGCTCGGAAATAATAGGGTA GCTCTATATAGTTTTTTATATGAGATATATGTGGTTTGTACTCGTGTTTT ATAATAGGGTTGAGTACTTGGAGAAAAGCAGACATCTCGAACGACAACTC ACCGAATTGAAAACTGAAATTGAAGGATTAAAAGTAGCTGGCAACCCTGA TATTCTGGATCGAATTCATCTCGAAAGTGTTGGAAAAGGAGAGACTAAAT TCTCAACTATGCAAAAGGTATTTCGATctttttattgtaattttaaTTAT TCATTCATTTTGAATCTATCAATTATTACTCCAAgccaattcgcgaaatt ttgtcgacgctaaaattttgaattctcAAAACGCGAAAAGGCGAAAATTC ATCCACTCAAGGTAAAATGCTATCACATACGCAGATTTGTTGGACTCGTC GAATTCCAGGGCTTTTcctcaactttttcaaaagagtataaatgTTGAGA ATTGACCGTTGACTCTAAAAATTTccctttctttttttcagcttcAAGCG GCTTCAACGAACTCTCGTGTTCAAGTTTATCAAAGATTATAAAACAACTC CAGCATTTAGTCTAACcatcttatttttaaaattttgatcaccCCTGTCT CGAAAagaccatagtccgtataagaAACCACAGTCTGGGTAGActgagtc gtttataatgcgtgtaatactaataatacgggatttagtttgtataaact aaaattgttcccttcattactttttgctttatttctactatgtataaatt agtcgtctaggtTGCTAGACTACGGTCTGGGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001984XLOC_001984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003555-exon-sc0000030-1491911889:300001..300138TCONS_00003555-exon-sc0000030-1491911889:300001..300138Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:300001..300138TCONS_00003555-exon-sc0000030-1510915933:300001..300138Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:300001..300138TCONS_00003555-exon-sc0000030-1575043694:300001..300138Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:301506..301634TCONS_00003555-exon-sc0000030-1491911889:301506..301634Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:301506..301634TCONS_00003555-exon-sc0000030-1510915933:301506..301634Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:301506..301634TCONS_00003555-exon-sc0000030-1575043694:301506..301634Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:301888..302097TCONS_00003555-exon-sc0000030-1491911889:301888..302097Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:301888..302097TCONS_00003555-exon-sc0000030-1510915933:301888..302097Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:301888..302097TCONS_00003555-exon-sc0000030-1575043694:301888..302097Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:302329..302397TCONS_00003555-exon-sc0000030-1491911889:302329..302397Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:302329..302397TCONS_00003555-exon-sc0000030-1510915933:302329..302397Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:302329..302397TCONS_00003555-exon-sc0000030-1575043694:302329..302397Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:302737..302822TCONS_00003555-exon-sc0000030-1491911889:302737..302822Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:302737..302822TCONS_00003555-exon-sc0000030-1510915933:302737..302822Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:302737..302822TCONS_00003555-exon-sc0000030-1575043694:302737..302822Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:303039..303114TCONS_00003555-exon-sc0000030-1491911889:303039..303114Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:303039..303114TCONS_00003555-exon-sc0000030-1510915933:303039..303114Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:303039..303114TCONS_00003555-exon-sc0000030-1575043694:303039..303114Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:304689..304763TCONS_00003555-exon-sc0000030-1491911889:304689..304763Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:304689..304763TCONS_00003555-exon-sc0000030-1510915933:304689..304763Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:304689..304763TCONS_00003555-exon-sc0000030-1575043694:304689..304763Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:305073..305186TCONS_00003555-exon-sc0000030-1491911889:305073..305186Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:305073..305186TCONS_00003555-exon-sc0000030-1510915933:305073..305186Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:305073..305186TCONS_00003555-exon-sc0000030-1575043694:305073..305186Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:306132..306254TCONS_00003555-exon-sc0000030-1491911889:306132..306254Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:306132..306254TCONS_00003555-exon-sc0000030-1510915933:306132..306254Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:306132..306254TCONS_00003555-exon-sc0000030-1575043694:306132..306254Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:306866..306997TCONS_00003555-exon-sc0000030-1491911889:306866..306997Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:306866..306997TCONS_00003555-exon-sc0000030-1510915933:306866..306997Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:306866..306997TCONS_00003555-exon-sc0000030-1575043694:306866..306997Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:308018..308103TCONS_00003555-exon-sc0000030-1491911889:308018..308103Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:308018..308103TCONS_00003555-exon-sc0000030-1510915933:308018..308103Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:308018..308103TCONS_00003555-exon-sc0000030-1575043694:308018..308103Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:308443..308545TCONS_00003555-exon-sc0000030-1491911889:308443..308545Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:308443..308545TCONS_00003555-exon-sc0000030-1510915933:308443..308545Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:308443..308545TCONS_00003555-exon-sc0000030-1575043694:308443..308545Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:309003..309193TCONS_00003555-exon-sc0000030-1491911889:309003..309193Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:309003..309193TCONS_00003555-exon-sc0000030-1510915933:309003..309193Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:309003..309193TCONS_00003555-exon-sc0000030-1575043694:309003..309193Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:310208..310367TCONS_00003555-exon-sc0000030-1491911889:310208..310367Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:310208..310367TCONS_00003555-exon-sc0000030-1510915933:310208..310367Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:310208..310367TCONS_00003555-exon-sc0000030-1575043694:310208..310367Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1491911889:310642..310932TCONS_00003555-exon-sc0000030-1491911889:310642..310932Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1510915933:310642..310932TCONS_00003555-exon-sc0000030-1510915933:310642..310932Clytia hemisphaericaexon
TCONS_00003555-exon-sc0000030-1575043694:310642..310932TCONS_00003555-exon-sc0000030-1575043694:310642..310932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:300001..310932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.549848 0.00211064 0 0.881724 0 0 0 0 0 0 1.58309e-05 0.0957238 0 3.29536e-08 1.35148 1.24538 1.40347 0.474988 0 0 0.560099 5.19649e-08 0.7663 4.97984e-05 0 0 3.0201e-10 0 0.767171 0.000183754
Blast
BLAST of TCONS_00003555 vs. Swiss-Prot (Human)
Match: MERL (Merlin OS=Homo sapiens GN=NF2 PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 1.624e-108
Identity = 231/620 (37.26%), Postives = 357/620 (57.58%), Query Frame = 1
Query:   52 KMAKNTNNRKQ---MAVHVVTKPEEELEFYVDKNIKGQELFDLVCKVIGLRENYYFGLHYECPNQQPLWLRMDKKVRSELGEQNMSN---IKLYLQVQFYPIDVDTGIIMEQTTHLFFLHVKSEILSESIYCPTEESILLASYAVQAKYGDFDSDIHKKHFLANDQLLPQRVLAQYKLSADEWEERIVKWYSQHCQGLSRYQAEMEYLKTAQNLEMYGIGYFRIQ-------------------------------IW--------------IQPMDKEVQDFHFVSLDVAINRKILLLSSGNHDLYMRSKKEDTMEIQIMKSQAQDAREQRHREQNRLYKEIRRRIEETQARIDMEKRL---KDYSGLIDEYRKHLQKAEETTDXXXXXXXXXXXXXXXXXXXXXDFETEIKSLRHVCNQKDEEKTYLESHIQSAQINIQQILHESNRRAQETVLLKQELDKSRHSEKMATEKLIQISNNYQRAP--PIQYSSYAXXXXXXXXXXXXXXXXXXXXXXXXXSQSHLHYGGAPNYVGGDGEDFTMSVQLERVEYLEKSRHLERQLTELKTEIEGLKVAGNPDILDRIHLESVGK-GETKFSTMQKLQAASTNSRVQVYQRL 1740
            +M+ ++  RKQ     V +VT  + E+EF  +   KG++LFDLVC+ +GLRE ++FGL Y   +    WL+MDKKV     + ++S    +  +   +FYP + +  ++ E T HLFFL VK +IL E IYCP E S+LLASYAVQAKYGD+D  +HK+ FLA ++LLP+RV+  Y+++ + WEERI  WY++H +G +R +AEMEYLK AQ+LEMYG+ YF I+                                W              I+P+DK++  F F S  + +N+ IL L  GNHDL+MR +K D++E+Q MK+QA++ + ++  E+ RL +E + R E  + R ++E+RL   K+ + + +E    L ++EET DLLAEKA + EEEAKLL +KAA+ E E++ ++    + +EEK  +E  +  A++   ++  ES RRA+E   LKQ+L ++R +E+ A +KL++I+      P  PI                           P   S + +    + ++   D +  +M ++ E+VEY+EKS+HL+ QL ELKTEIE LK+      LD +H E+  + G +K +T++KL   S  SRV  ++ L
Sbjct:    8 RMSFSSLKRKQPKTFTVRIVTM-DAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVA-WLKMDKKVL----DHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEH-RGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANE---ALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKPTYPPMNPIPAP----------------------LPPDIPSFNLIGDSLSFDFKDTDMKRLSMEIEKEKVEYMEKSKHLQEQLNELKTEIEALKLKERETALDILHNENSDRGGSSKHNTIKKLTLQSAKSRVAFFEEL 595          
The following BLAST results are available for this feature:
BLAST of TCONS_00003555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MERL1.624e-10837.26Merlin OS=Homo sapiens GN=NF2 PE=1 SV=1[more]
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