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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003553 ID=TCONS_00003553|Name=TCONS_00003553|organism=Clytia hemisphaerica|type=transcript|length=2204bpRun BLAST on NCBI protein sequence of TCONS_00003553-protein >TCONS_00003553-protein ID=TCONS_00003553-protein|Name=TCONS_00003553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=607bp MAKNTNNRKQMAVHVVTKPEEELEFYVDKNIKGQELFDLVCKVIGLRENYRun BLAST on NCBI transcript from alignment at sc0000030:299915..310932+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003553 ID=TCONS_00003553|Name=TCONS_00003553|organism=Clytia hemisphaerica|type=transcript|length=11018bp|location=Sequence derived from alignment at sc0000030:299915..310932+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:299915..310932+ >TCONS_00003553 ID=TCONS_00003553|Name=TCONS_00003553|organism=Clytia hemisphaerica|type=CDS|length=29184bp|location=Sequence derived from alignment at sc0000030:299915..310932+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003553 vs. Swiss-Prot (Human)
Match: MERL (Merlin OS=Homo sapiens GN=NF2 PE=1 SV=1) HSP 1 Score: 421.394 bits (1082), Expect = 2.097e-137 Identity = 254/620 (40.97%), Postives = 392/620 (63.23%), Query Frame = 3
Query: 138 KMAKNTNNRKQ---MAVHVVTKPEEELEFYVDKNIKGQELFDLVCKVIGLRENYYFGLHYECPNQQPLWLRMDKKVRSELGEQNMSN---IKLYLQVQFYPIDVDTGIIMEQTTHLFFLHVKSEILSESIYCPTEESILLASYAVQAKYGDFDSDIHKKHFLANDQLLPQRVLAQYKLSADEWEERIVKWYSQHCQGLSRYQAEMEYLKTAQNLEMYGIGYFRIQNELGTELWLGIHATGINIYESDNQLIPKVSFLWTEIKNISFKNKQIWIQPMDKEVQDFHFVSLDVAINRKILLLSSGNHDLYMRSKKEDTMEIQIMKSQAQDAREQRHREQNRLYKEIRRRIEETQARIDMEKRL---KDYSGLIDEYRKHLQKAEETTDXXXXXXXXXXXXXXXXXXXXXDFETEIKSLRHVCNQKDEEKTYLESHIQSAQINIQQILHESNRRAQETVLLKQELDKSRHSEKMATEKLIQISNNYQRAP--PIQYSSYAXXXXXXXXXXXXXXXXXXXXXXXXXSQSHLHYGGAPNYVGGDGEDFTMSVQLERVEYLEKSRHLERQLTELKTEIEGLKVAGNPDILDRIHLESVGK-GETKFSTMQKLQAASTNSRVQVYQRL 1961
+M+ ++ RKQ V +VT + E+EF + KG++LFDLVC+ +GLRE ++FGL Y + WL+MDKKV + ++S + + +FYP + + ++ E T HLFFL VK +IL E IYCP E S+LLASYAVQAKYGD+D +HK+ FLA ++LLP+RV+ Y+++ + WEERI WY++H +G +R +AEMEYLK AQ+LEMYG+ YF I+N+ GTEL LG+ A G++IY+ +N+L PK+SF W EI+NIS+ +K+ I+P+DK++ F F S + +N+ IL L GNHDL+MR +K D++E+Q MK+QA++ + ++ E+ RL +E + R E + R ++E+RL K+ + + +E L ++EET DLLAEKA + EEEAKLL +KAA+ E E++ ++ + +EEK +E + A++ ++ ES RRA+E LKQ+L ++R +E+ A +KL++I+ P PI P S + + + ++ D + +M ++ E+VEY+EKS+HL+ QL ELKTEIE LK+ LD +H E+ + G +K +T++KL S SRV ++ L
Sbjct: 8 RMSFSSLKRKQPKTFTVRIVTM-DAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVA-WLKMDKKVL----DHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEH-RGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANE---ALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKPTYPPMNPIPAP----------------------LPPDIPSFNLIGDSLSFDFKDTDMKRLSMEIEKEKVEYMEKSKHLQEQLNELKTEIEALKLKERETALDILHNENSDRGGSSKHNTIKKLTLQSAKSRVAFFEEL 595 The following BLAST results are available for this feature:
BLAST of TCONS_00003553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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