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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003552 ID=TCONS_00003552|Name=TCONS_00003552|organism=Clytia hemisphaerica|type=transcript|length=1658bp
GTACAATTTAattgaaatatttcagaaaaacgattttattgaaaatttta
aagatataaTATACAGCTCAATTTGTAGTGAtatgtaaattttaaaattg
tatttaatAAAAAAAGGTGCCCAAAAGGTCACAAAATggataaataaaaa
ataaaattatcgtatattttgaaataaattatgaACAAAAGAtttaaagt
aaattaaagttCAATTAAAAATAACATTAAAAATGAAGTCATACAATGAG
AAcgcaacaaaaaaaattgacgcaAGCTTATTTCGTTAAGACTTTATTTA
TCATGGTTTTGGTACATATTTCATAACAGAATTTATCTCACTTGTATTCG
CTCTCCTTTAAAAACATTAGATTGGCGATGTTAAAGTATCGATAGAAAAA
TTACAAAGCGGATATACTACGCGAGGTAAGTCTATCTTGCTTTGTACTTA
GCCTGTAGAAAAAGTTCCTTACTGTGAATAAAGGCTAGTGGAAATTCGTC
CGTCCTCGTTCGTGATTTATCTATTAGCAAAGTTATGTAAATCGAAGGAG
ACgatataaagcaaagttgacatgtcacCAAAATCGCCGTCCTCACGAAG
GTAAAAAACCCAAAATACCGTcatctgtttaggtgagcaacggcgatata
gagccgtacatcaactatcgactttgttttgcatCGACTTCACTTTATCG
TTGCCCTCGAAATCCTCTGATACATTAACTCCCTATTTACACTTAACTTT
GCTATTAGCAAATATTCTTTGCAAAGTTCATCAGCAAATTCTAACAACAA
GAGGCATCGACTTTTACAGGACTTTTTCACAGTATTGAAAAAGCTTACAA
GTTAAAGTCTTTGAAACATAACTTAAGACTAGCGTCGCCAAGTTGCAAAT
TACTACtacacgtttctttttacaaaaaattcaaaaatgaaaaatattca
caacaacaaaaaagacgaaaatcgaaatgaaacaaaaataatcattatAA
ATTagctgaatttaaaatagaGCTACTATATGAGCAAACTGCACAATGCG
CCAGCCCGTGTCTACAAAGAGGGGTGCTTCCATACCGTCCGTAATTGGGG
GTCGatgaaaaataattgttttgTGTATAAGGTGATCCGACATTGGTAGT
TGGTGTGGTATAACTGCCAAAATTCTGCCATTGAGAAGAAGTACTCGATA
AAAGTTCCGTATTGAGTTGTAATTGTTTTTTAAGCGATTTTCCTGCTCCT
ACGTGATCGTGGAAACTCGCCCCGTTATTATATTCAGTACCGGGTGTATT
CACTGTATTTTGAGGATTTCCGGACGAATAAATAGATCCGGGTAGGACCA
TTGGTAATACTGAATTCGCTGAAGTGTTTTGTGGGAGATAATTTTCGAAA
CTCGGGGATGGGGAAGGCGATGCGGCCGGGTTATAATGATATCGGAACTC
ATCACGTGGTGAAAAATCACGTGATGAGAAGAATTGATCACGTGATGAAG
TAAACATGGCTGTCGGGGAAAGGAAACGTCGTGATTTGATGTGACTTTCG
TAAGACGATATATGTGTTGGAGGTGAAATTGTGTCTTTGAAACGCATCTT
GCTTGGAGTTGAATTTAAACTGGAAATTCCAGATTCTGGTGATTCTATAG
AGATAAAA Run BLAST on NCBI transcript from alignment at sc0000030:264251..266185+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003552 ID=TCONS_00003552|Name=TCONS_00003552|organism=Clytia hemisphaerica|type=transcript|length=1935bp|location=Sequence derived from alignment at sc0000030:264251..266185+ (Clytia hemisphaerica)
GTACAATTTAattgaaatatttcagaaaaacgattttattgaaaatttta
aagatataaTATACAGCTCAATTTGTAGTGAtatgtaaattttaaaattg
tatttaatAAAAAAAGGTGCCCAAAAGGTCACAAAATggataaataaaaa
ataaaattatcgtatattttgaaataaattatgaACAAAAGAtttaaagt
aaattaaagttCAATTAAAAATAACATTAAAAATGAAGTCATACAATGAG
AAcgcaacaaaaaaaattgacgcaAGCTTATTTCGTTAAGACTTTATTTA
TCATGGTTTTGGTACATATTTCATAACAGAATTTATCTCACTTGTATTCG
CTCTCCTTTAAAAACATTAGATTGGCGATGTTAAAGTATCGATAGAAAAA
TTACAAAGCGGATATACTACGCGAGGTAAGTCTATCTTGCTTTGTACTTA
GCCTGTAGAAAAAGTTCCTTACTGTGAATAAAGGCTAGTGGAAATTCGTC
CGTCCTCGTTCGTGATTTATCTATTAGCAAAGTTATGTAAATCGAAGGAG
ACgatataaagcaaagttgacatgtcacCAAAATCGCCGTCCTCACGAAG
GTAAAAAACCCAAAATACCGTcatctgtttaggtgagcaacggcgatata
gagccgtacatcaactatcgactttgttttgcatCGACTTCACTTTATCG
TTGCCCTCGAAATCCTCTGATACATTAACTCCCTATTTACACTTAACTTT
GCTATTAGCAAATATTCTTTGCAAAGTTCATCAGCAAATTCTAACAACAA
GAGGCATCGACTTTTACAGGACTTTTTCACAGTATTGAAAAAGCTTACAA
GTTAAAGTCTTTGAAACATAACTTAAGACTAGCGTCGCCAAGTTGCAAAT
TACTACtacacggttttttataagaacaaactatataaaaacttaagatt
tcgatgaccaaaatgttaagaacaagttaagaacattttagggctttgcg
gactctaaaatactgaatttcttagggaaatagacaaaaacactcaaaaa
atggcgaaaataagaatatgttaattaacatttttaggcttgaatctcaa
aaagttaagaacatcccaaggcttcaaagattttggatgttcttataaaa
aaacgtgtttgtCCTATTTCTGGCCTctctttttaaaagtttctttttac
aaaaaattcaaaaatgaaaaatattcacaacaacaaaaaagacgaaaatc
gaaatgaaacaaaaataatcattatAAATTagctgaatttaaaatagaGC
TACTATATGAGCAAACTGCACAATGCGCCAGCCCGTGTCTACAAAGAGGG
GTGCTTCCATACCGTCCGTAATTGGGGGTCGatgaaaaataattgttttg
TGTATAAGGTGATCCGACATTGGTAGTTGGTGTGGTATAACTGCCAAAAT
TCTGCCATTGAGAAGAAGTACTCGATAAAAGTTCCGTATTGAGTTGTAAT
TGTTTTTTAAGCGATTTTCCTGCTCCTACGTGATCGTGGAAACTCGCCCC
GTTATTATATTCAGTACCGGGTGTATTCACTGTATTTTGAGGATTTCCGG
ACGAATAAATAGATCCGGGTAGGACCATTGGTAATACTGAATTCGCTGAA
GTGTTTTGTGGGAGATAATTTTCGAAACTCGGGGATGGGGAAGGCGATGC
GGCCGGGTTATAATGATATCGGAACTCATCACGTGGTGAAAAATCACGTG
ATGAGAAGAATTGATCACGTGATGAAGTAAACATGGCTGTCGGGGAAAGG
AAACGTCGTGATTTGATGTGACTTTCGTAAGACGATATATGTGTTGGAGG
TGAAATTGTGTCTTTGAAACGCATCTTGCTTGGAGTTGAATTTAAACTGG
AAATTCCAGATTCTGGTGATTCTATAGAGATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003552-exon-sc0000030-1491911889:264251..265162 | TCONS_00003552-exon-sc0000030-1491911889:264251..265162 | Clytia hemisphaerica | exon |
| TCONS_00003552-exon-sc0000030-1510915933:264251..265162 | TCONS_00003552-exon-sc0000030-1510915933:264251..265162 | Clytia hemisphaerica | exon |
| TCONS_00003552-exon-sc0000030-1575043694:264251..265162 | TCONS_00003552-exon-sc0000030-1575043694:264251..265162 | Clytia hemisphaerica | exon |
| TCONS_00003552-exon-sc0000030-1491911889:265440..266185 | TCONS_00003552-exon-sc0000030-1491911889:265440..266185 | Clytia hemisphaerica | exon |
| TCONS_00003552-exon-sc0000030-1510915933:265440..266185 | TCONS_00003552-exon-sc0000030-1510915933:265440..266185 | Clytia hemisphaerica | exon |
| TCONS_00003552-exon-sc0000030-1575043694:265440..266185 | TCONS_00003552-exon-sc0000030-1575043694:265440..266185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:264251..266185 + |
Blast
The following BLAST results are available for this feature:
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