TCONS_00003550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003550
Unique NameTCONS_00003550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003550 ID=TCONS_00003550|Name=TCONS_00003550|organism=Clytia hemisphaerica|type=transcript|length=1496bp
gagtgttaATGAGAGAGGgaagacgatgagagaagtgctgctgtttataa
atcatactttatcgcagaggtctccgtacgggaatgcacacagagtgtac
tacgaagcgataaacGACCACCACGTGACGGCTACTCCACATGTACACCA
CCCACAGCCACAAGCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCG
TTAACCAACAACAAGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCC
CATCACCAACATGCGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAA
TCAACCACAACAGACACAACCACATTATATTACAAGACCGGTATATCGAA
CGCAATCATATCCTTCCGCTGGCACGCCAATCGAGATGCAAAACAATTCA
CCCATATTGAGTAACCCAACATCGGTGTATCCGAGTGCAGCAGCGGGTTA
TGTACAGAATCAACCGCAGATGTTTGTACTGAACACGCAACAGTACCAGC
AGCAGATGATGCAAGGTCAACAAGGACAACCTTATATGACGGCGCCTCAC
CCTTCCGCCATCCGTTTCATCAATCCAGCACAGCGCATGCCCAATACCGC
CAATTTCCACCCACAAGATAACAATGCGACCATCGCATCAAGTTATATAT
TACAAGCGACACCTCATTCTGTGGCCACACCCCACCAAACGATGGCGGCT
TCCTACCAACAACATCAAACGCCCTCTTCTCCCGCCACAGGGGGCGCCGG
TTCAGTGGTGGTCTCACAACATTACGTACCGTCCCACCATCAGCAATACG
TTATGAATAACCAAAATACAAATTATCAACATGTTGCGCACTCAATGCAT
TCACAAGGGAACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCA
ACGACCATCAGTATACACAGCGGGTGGACAACCTCATCATCAGCAACAAC
ACCAACAACCGNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCG
GGTGGACAACCTCATCATCAACAACAACACCAACAACCGTTCGTCGTTAT
ACCACAACCCTTTCATCACCCAGGCCAAGGAGGGTTGATTCAGCCGAACT
TTCAACAGGGAAATTAGAAAAGTGAACAcataaaaaacatagaaaatggT
TCAATGGTATGCTTACGTGGGGATGTTCAAGCGTTCAGTTTTTGCAAATg
aagaaaacacaaaaaaatagaaagcaAATTCACGTCGGGGAAATGCTCCG
AATCAAGGTTGAGAGAAGAAAAAAGAGACGAGATTACTAGTCTATGATTA
CAGATAGAATTGATAGATATTTTCTCTTCGGGAAACGATACAAACTTTGT
ATTTTAtacgaaaaatatttagcaaAGAATAAGATTTTATGCATCCAGGA
TGTGACAATGCCAAAGCAAtgtcttttcaaaaattggataaaaagatatt
ttgatgagataataaaaagaaagaattcagaaatgaaataaaatta
Run BLAST on NCBI

protein sequence of TCONS_00003550-protein

>TCONS_00003550-protein ID=TCONS_00003550-protein|Name=TCONS_00003550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
SVNERGKTMREVLLFINHTLSQRSPYGNAHRVYYEAINDHHVTATPHVHH
PQPQASHQYIAATPGGVNQQQVVIAAHHQQAAAHHQHAPQVGPQEVIQPN
QPQQTQPHYITRPVYRTQSYPSAGTPIEMQNNSPILSNPTSVYPSAAAGY
VQNQPQMFVLNTQQYQQQMMQGQQGQPYMTAPHPSAIRFINPAQRMPNTA
NFHPQDNNATIASSYILQATPHSVATPHQTMAASYQQHQTPSSPATGGAG
SVVVSQHYVPSHHQQYVMNNQNTNYQHVAHSMHSQGNPAAAAAATAVYQQ
RPSVYTAGGQPHHQQQHQQPXAVYQQRPSVYTAGGQPHHQQQHQQPFVVI
PQPFHHPGQGGLIQPNFQQGN
Run BLAST on NCBI

transcript from alignment at sc0000030:241339..247226+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003550 ID=TCONS_00003550|Name=TCONS_00003550|organism=Clytia hemisphaerica|type=transcript|length=5888bp|location=Sequence derived from alignment at sc0000030:241339..247226+ (Clytia hemisphaerica)
gagtgttaATGAGAGAGGgaagacgatgagagaagtgctgctgtttataa
atcatactttatcgcagaggtctccgtacgggaatgcacacagagtgtac
tacgaagcgataaacgtgagatacactctggtacagagtactcAATGAGG
TGTTTAGGAGAAATCCATTTAATGTCATAGTGGCCCGGGAGATACTAGGG
TTAAGGGAggctgggtatgtgcgtgccggACCTTCCAAACCCTTACCCTT
AGAGATActcatttttgttgaaaaggtgacccttagagagacctttttta
ataattttcttcgtcctccccccccccccccctttaaaattttttttccc
cccccctttttaatttttttttcaaccccccccccccccccccagtttaA
ACTCTTTTGTCAACCTCAGCTTGTGTGTCTCAAATGTAAAAACGAAGACA
TCGTAATAAAAGGAGGCTGTGATATGTCTGCTGACGCATCTCGACTTAAA
CTCAAAGACGCTCTTGGCTTAACTTTGCCTGAGCCAAATTTGCATAGTTA
GCGTCTATTGGTGAACTATGAGATAATCAccataactcgaacccagtcct
tCGCTCTTATCTTATGATATCAACTTAAACAATAGAGTGTCCATTATTAC
AATTCTTTGAAACAAATTTTCTGCTCGTCTGTCGATAAACCCTTAAACAA
AACAGTTTTCATAACTTGATCTCTCTATTACTCGAATACTACATTTTTGT
TCCTCGTGTTTGATCGAGTTATGGAGAAATTGCTGATCACCTTCCCTCAT
TATAGGACCACCACGTGACGGCTACTCCACATGTACACCACCCACAGCCA
CAAGCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCGTTAACCAACA
ACAAGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCCCATCACCAAC
ATGCGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAATCAACCACAA
CAGACACAACCACATTATATTACAAGACCGGTATATCGAACGCAATCATG
TAAgaatttctgttttgttttgttttaaacttttttttgttactACAGGT
GGTAAACTTTAAAACTTATTAAGGATATAATGATCTCAAAAATGTGAAAC
AGTGTTAATAGATgcttgaatttcaaagaaataaacaaaCACTCTTCATT
CGGACTATGTTTCGCGAGATTTAATTTCGAAAACAAATCTCGCGAAATTG
CACGAGATCACTGACAATGCTATTTTTAACGTTTCATGGGTCACTTTATG
CAAAATTTTGGTTGACGCAAAAATTTGTCTAATTAAAGTATCTTTGATCT
AATAAAAGTTCGAGTTCACGGAGAGTTTTTAGTTCGACGGGAATTAGATG
GATCGAACAAAGTTTGATGAATGAGTATATATAGACTCAatacattcaat
atttttcctttttctaaaCAGATCCTTCCGCTGGCACGCCAATCGAGATG
CAAAACAATTCACCCATATTGAGTAACCCAACATCGGTGTATCCGAGTGC
AGCAGCGGGTTATGTACAGAATCAACCGCAGATGTTTGTACTGAACACGC
AACAGTACCAGCAGCAGGTTCGTCTTAAGGTAGACTACACATAACTTTTT
GATTAATGATTAATAGGATAAGATTCCTTGGATTTCTTGAAATCAAGTCC
CGATGGAGATTTGAAATGATTTTATCAAGAATTCTgtgaaaaatagtgaa
aaactactaaaaactactaaaatagaagaaaaaatgaaaattgagatCTT
CTAGAGAGGAAAATATTGAGCCTACTCTTCTTTCGGAAAGTTagctttgt
tttttgtaaacaaaggagAGATTTCCATGTGTAAAAAAGGTAAACTTGGT
ACTTTTCTAAGTTGTTAAAGTCCGTTCACTTTATGCGTGCGCTAATTCTT
GTTTTACACTTGCTTActaacatattatataccgttgaaaagataattca
gagcgctttaatttttggggaaaatgattcaaaaaaaaatacaaaataaa
gataaaaaatggAGAAGAAGAAAGATTTTTATCCTTTGTTTGTaggaact
tcatttttggtacaGAGGTACTTTGAAGCCTCCTGATTTCAGCTatataa
taattatttttctctcAAAGTTCCTGCATCGAGCCCCTAGAAGGTAGCTC
GTTCGAGTcgaaaaatgttataaaaatggATTAATACTTTAGTTCGACTT
ACATAAAGATTCAACTTGTTCAAATTCGAATAAGAGAGGTTTGACAGTAT
TTACTTTTGCATCTTTCAGATGATGCAAGGTCAACAAGGACAACCTTATA
TGACGGCGCCTCACCCTTCCGCCATCCGTTTCATCAATCCAGCACAGCGC
ATGCCCAATACCGCCAATTTCCACCCACAAGATAACAATGCGACCATCGC
ATCAAGTTATATATTACAAGGTAAGGTCcacattttaaacaattttgaac
agaaatatttttacagcCTCGCAAGCCATATCTTGAGTGCTTACACACTA
AAAGGACGNTTTAAACAATTTTGAAcagaaatatttttacagcCTCGCAA
GCCATATCTTGAGTGCTTACACACTAAAAAGACACCTCTGTATTCTCAAA
TATGTCATCGAAACGAACTTAAACATTTTCTCTTTTAGCGACACCTCATT
CTGTGGCCACACCCCACCAAACGATGGCGGCTTCCTACCAACAACATCAA
ACGCCCTCTTCTCCCGCCACAGGGGGCGCCGGTTCAGTGGTGGTCTCACA
ACATTACGTACCGTCCCACCATCAGCAATACGTTATGAATAACCAAAATA
CAAATTATCAACATGTTGCGCACTCAATGCATTCACAAGGTAAACTTTAC
TCTATACTTGTATTTCCATCCTTAAGTTGCTGGGAAGAACTGATTCTAGA
GAAATTCGGTCCCGGAAATATCACCCTACCCGGAAATCTCCTTTCGGGGA
AAATTTCCAGGGTCTGATTGAACTTCTGTCACCGGCAGAAGTAAAGTGGA
CTCTAAGAATTTTCCATAAGATGCTTTTTATGATTCGAATCTCTATGACA
TTCCACCAAATTAGATTACACGCTCTGAGTCCGAATTAAgcaaaattaaa
ggttttgtcttGATTGAAAGGTCCgatgatgctgatgtagtaaaaacaag
tgcgacaagattagaaaaggttttgaaaaaacgaaaatacattgaattaa
aaaatttttcttcaaaaaaagggATTTTTACTGATACTCTTCCGAATGTT
TCATCTTAtattataatcaaaacattcggtTGTAAATCTgctcgaaatca
actttgctattcttttgtttacaaaagcaataaaatgtgaggtcacatct
cgaaacaactttcgatctttcacttgtttgcagAATATCGTTGCGTAAAA
AAAGTAGCTTAAATTTATCTGACTCAGCTTGAAGACACTGCAtaaaataa
gctccttttattcccgTAAAGAGCCTTTAAGCATGTACTTAGCATCAGCT
TTACCAACAAAATTTACACCACGCCTCTAAAAACGTGTATTCCTGTTTAG
GGAACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCAACGACCA
TCAGTATACACAGCGGGTGGACAACCTCATCATCAGCAACAACACCAACA
ACCGNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCGGGTGGAC
AACCTCATCATCAACAACAACACCAACAACCGTTCGTCGTTATACCACAA
CCCTTTCATCACCCAGGTAACCGAAAACTCTTTGTGGAGATTTGTCAGTT
TTGAATTGAACTTAGCATTGATGAAGCCAGTTTTTACAAGGCCAAGATAC
GGCTGACGGCATTATAGCGTTATCGgcgctttaatgatttttatgtacgg
aattttaagtttgccttgaaaaacaGATATTCactcacaacttaccatca
gattttaccaagtgactgaatcaatctggcttagatCTCTAGGCTAGCAT
TAGGCTATTGCCATTATTGATGGGTTtcgataagataagataagataaaa
agcTGAAATGGAAAAAGAGGACAAGGTTAGATTGAGAGATTATTAGTTCT
GTGAAATAAAAAGACGAAAACACATTATCTCGGCTCCCATTTTTATCAGT
ATTACTGCTGTTTTTCCAACTTTAAGGTAGAGAAAAACTGAGGCATTTTC
GTCTTAGGTAACTGAAAATTCAGCATCTTAAAGGTTTCCCGAGTATATAG
CCAACGGTGCCNGTCAGTTTTGAATTGAACTTAGCATTGATGTAGCCCGA
GTATATAGCCAACGGTGCTTAATTATGATAacctttcttctttctttctc
agGCCAAGGAGGGTTGATTCAGCCGAACTTTCAACAGGGAAATTAGAAAA
GTGAACAcataaaaaacatagaaaatggTTCAATGGTAAGCtggtttatt
tttcattcgACATCTTATCGGGTTGAGGTTTTGCGGGTCATTTCAAACCA
TTCATTTGGCTGTTAGGTTTTGAAACATTCTattttattaaaggttttgt
ttttaaataagagtgatatcgtttgcttactcatcaattttaatttaaaa
gctttttcacattggattgacacggatgtgtaGCAAGATGAtcagaaaga
gggaaagaaaaacatttttttgtttataccagcacaatataacaataggc
agacactgtcctgattagacaggagacccgtcctgtatttttataatctg
atgtatacggGACGGGTATGACCTGCGAGGCACAaatctgcctcaaaaaa
tttacagtggaaAATTCGAAATTAGCGCTGCTGTCCTCactaaaacaaaa
accaaatttcggaagttgcgctttctctaagaaagtgtgaccagcaaaag
aataacaaaatttgattggctatgttttcaaccgttattaggatctggga
aattcaaactctcaggccataccatgctatatatttcgcctcaaattgtt
cttataaaacccACCCTTTTTCACAGACCCAGTAAgatattccattgttt
tcaagtcaaaaaaatccAGTAGGGATAGAAAGTAGCATATTGATGAtttg
tttatttaattattttcagtggggtcAAGAGCGGTGTATACTTTGCCAtt
tggggacgatattttagccaatttttttcagtggaaggggtcccaccggg
tctgtgagaaaaggGGTGTTATAAAGATAGTGTGTATAGCAAAGATTTGG
TGCATATGCACAGGGGGTAGATGTACCTGTCATGATGTTTACACGTTtgt
cataagaacatccaaaattttccaagctttcgaatgttcttaacatgttc
ttattttcaccattttgtgaccatttttatcAATGTTCCTAATAAATAGT
TGTCagcaaagcctcaaaatgttcttaacttgtacttgatatttttgcca
tcgaaacTTTTAAATGATTTTACTTCTGCATTTCTCTATTTTGTGTAGGT
ATGCTTACGTGGGGATGTTCAAGCGTTCAGTTTTTGCAAATgaagaaaac
acaaaaaaatagaaagcaAATTCACGTCGGGGAAATGCTCCGAATCAAGG
TTGAGAGAAGAAAAAAGAGACGAGATTACTAGTCTATGATTACAGATAGA
ATTGATAGATATTTTCTCTTCGGGAAACGATACAAACTTTGTATTTTAta
cgaaaaatatttagcaaAGAATAAGATTTTATGCATCCAGGATGTGACAA
TGCCAAAGCAAtgtcttttcaaaaattggataaaaagatattttgatgag
ataataaaaagaaagaattcagaaatgaaataaaatta

Coding sequence (CDS) from alignment at sc0000030:241339..247226+

>TCONS_00003550 ID=TCONS_00003550|Name=TCONS_00003550|organism=Clytia hemisphaerica|type=CDS|length=7812bp|location=Sequence derived from alignment at sc0000030:241339..247226+ (Clytia hemisphaerica)
agtgttaATGAGAGAGGgaagacgatgagagaagtgctgctgtttataaa
tcatactttatcgcagaggtctccgtacgggaatgcacacagagtgtact
acgaagcgataaacGACCACCACGTGACGGCTACTCCACATGTACACCAC
CCACAGCCACAAGCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCGT
TAACCAACAACAAGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCCC
ATCACCAACATGCGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAAT
CAACCACAACAGACACAACCACATTATATTACAAGACCGGTATATCGAAC
GCAATCATATCCTTCCGCTGGCACGCCAATCGAGATGCAAAACAATTCAC
CCATATTGAGTAACCCAACATCGGTGTATCCGAGTGCAGCAGCGGGTTAT
GTACAGAATCAACCGCAGATGTTTGTACTGAACACGCAACAGTACCAGCA
GCAGATGATGCAAGGTCAACAAGGACAACCTTATATGACGGCGCCTCACC
CTTCCGCCATCCGTTTCATCAATCCAGCACAGCGCATGCCCAATACCGCC
AATTTCCACCCACAAGATAACAATGCGACCATCGCATCAAGTTATATATT
ACAAGCGACACCTCATTCTGTGGCCACACCCCACCAAACGATGGCGGCTT
CCTACCAACAACATCAAACGCCCTCTTCTCCCGCCACAGGGGGCGCCGGT
TCAGTGGTGGTCTCACAACATTACGTACCGTCCCACCATCAGCAATACGT
TATGAATAACCAAAATACAAATTATCAACATGTTGCGCACTCAATGCATT
CACAAGGGAACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCAA
CGACCATCAGTATACACAGCGGGTGGACAACCTCATCATCAGCAACAACA
CCAACAACCGNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCGG
GTGGACAACCTCATCATCAACAACAACACCAACAACCGTTCGTCGTTATA
CCACAACCCTTTCATCACCCAGGCCAAGGAGGGTTGATTCAGCCGAACTT
TCAACAGGGAAATTAGagtgttaATGAGAGAGGgaagacgatgagagaag
tgctgctgtttataaatcatactttatcgcagaggtctccgtacgggaat
gcacacagagtgtactacgaagcgataaacGACCACCACGTGACGGCTAC
TCCACATGTACACCACCCACAGCCACAAGCGTCGCATCAATACATTGCAG
CAACGCCCGGCGGCGTTAACCAACAACAAGTTGTGATTGCCGCCCACCAT
CAACAAGCAGCCGCCCATCACCAACATGCGCCGCAAGTGGGTCCACAGGA
AGTTATTCAGCCTAATCAACCACAACAGACACAACCACATTATATTACAA
GACCGGTATATCGAACGCAATCATATCCTTCCGCTGGCACGCCAATCGAG
ATGCAAAACAATTCACCCATATTGAGTAACCCAACATCGGTGTATCCGAG
TGCAGCAGCGGGTTATGTACAGAATCAACCGCAGATGTTTGTACTGAACA
CGCAACAGTACCAGCAGCAGATGATGCAAGGTCAACAAGGACAACCTTAT
ATGACGGCGCCTCACCCTTCCGCCATCCGTTTCATCAATCCAGCACAGCG
CATGCCCAATACCGCCAATTTCCACCCACAAGATAACAATGCGACCATCG
CATCAAGTTATATATTACAAGCGACACCTCATTCTGTGGCCACACCCCAC
CAAACGATGGCGGCTTCCTACCAACAACATCAAACGCCCTCTTCTCCCGC
CACAGGGGGCGCCGGTTCAGTGGTGGTCTCACAACATTACGTACCGTCCC
ACCATCAGCAATACGTTATGAATAACCAAAATACAAATTATCAACATGTT
GCGCACTCAATGCATTCACAAGGGAACCCAGCGGCGGCAGCAGCGGCAAC
GGCCGTGTACCAGCAACGACCATCAGTATACACAGCGGGTGGACAACCTC
ATCATCAGCAACAACACCAACAACCGNCGGCCGTGTACCAGCAACGACCA
TCAGTATACACAGCGGGTGGACAACCTCATCATCAACAACAACACCAACA
ACCGTTCGTCGTTATACCACAACCCTTTCATCACCCAGGCCAAGGAGGGT
TGATTCAGCCGAACTTTCAACAGGGAAATTAGagtgttaATGAGAGAGGg
aagacgatgagagaagtgctgctgtttataaatcatactttatcgcagag
gtctccgtacgggaatgcacacagagtgtactacgaagcgataaacGACC
ACCACGTGACGGCTACTCCACATGTACACCACCCACAGCCACAAGCGTCG
CATCAATACATTGCAGCAACGCCCGGCGGCGTTAACCAACAACAAGTTGT
GATTGCCGCCCACCATCAACAAGCAGCCGCCCATCACCAACATGCGCCGC
AAGTGGGTCCACAGGAAGTTATTCAGCCTAATCAACCACAACAGACACAA
CCACATTATATTACAAGACCGGTATATCGAACGCAATCATATCCTTCCGC
TGGCACGCCAATCGAGATGCAAAACAATTCACCCATATTGAGTAACCCAA
CATCGGTGTATCCGAGTGCAGCAGCGGGTTATGTACAGAATCAACCGCAG
ATGTTTGTACTGAACACGCAACAGTACCAGCAGCAGATGATGCAAGGTCA
ACAAGGACAACCTTATATGACGGCGCCTCACCCTTCCGCCATCCGTTTCA
TCAATCCAGCACAGCGCATGCCCAATACCGCCAATTTCCACCCACAAGAT
AACAATGCGACCATCGCATCAAGTTATATATTACAAGCGACACCTCATTC
TGTGGCCACACCCCACCAAACGATGGCGGCTTCCTACCAACAACATCAAA
CGCCCTCTTCTCCCGCCACAGGGGGCGCCGGTTCAGTGGTGGTCTCACAA
CATTACGTACCGTCCCACCATCAGCAATACGTTATGAATAACCAAAATAC
AAATTATCAACATGTTGCGCACTCAATGCATTCACAAGGGAACCCAGCGG
CGGCAGCAGCGGCAACGGCCGTGTACCAGCAACGACCATCAGTATACACA
GCGGGTGGACAACCTCATCATCAGCAACAACACCAACAACCGNCGGCCGT
GTACCAGCAACGACCATCAGTATACACAGCGGGTGGACAACCTCATCATC
AACAACAACACCAACAACCGTTCGTCGTTATACCACAACCCTTTCATCAC
CCAGGCCAAGGAGGGTTGATTCAGCCGAACTTTCAACAGGGAAATTAGag
tgttaATGAGAGAGGgaagacgatgagagaagtgctgctgtttataaatc
atactttatcgcagaggtctccgtacgggaatgcacacagagtgtactac
gaagcgataaacGACCACCACGTGACGGCTACTCCACATGTACACCACCC
ACAGCCACAAGCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCGTTA
ACCAACAACAAGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCCCAT
CACCAACATGCGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAATCA
ACCACAACAGACACAACCACATTATATTACAAGACCGGTATATCGAACGC
AATCATATCCTTCCGCTGGCACGCCAATCGAGATGCAAAACAATTCACCC
ATATTGAGTAACCCAACATCGGTGTATCCGAGTGCAGCAGCGGGTTATGT
ACAGAATCAACCGCAGATGTTTGTACTGAACACGCAACAGTACCAGCAGC
AGATGATGCAAGGTCAACAAGGACAACCTTATATGACGGCGCCTCACCCT
TCCGCCATCCGTTTCATCAATCCAGCACAGCGCATGCCCAATACCGCCAA
TTTCCACCCACAAGATAACAATGCGACCATCGCATCAAGTTATATATTAC
AAGCGACACCTCATTCTGTGGCCACACCCCACCAAACGATGGCGGCTTCC
TACCAACAACATCAAACGCCCTCTTCTCCCGCCACAGGGGGCGCCGGTTC
AGTGGTGGTCTCACAACATTACGTACCGTCCCACCATCAGCAATACGTTA
TGAATAACCAAAATACAAATTATCAACATGTTGCGCACTCAATGCATTCA
CAAGGGAACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCAACG
ACCATCAGTATACACAGCGGGTGGACAACCTCATCATCAGCAACAACACC
AACAACCGNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCGGGT
GGACAACCTCATCATCAACAACAACACCAACAACCGTTCGTCGTTATACC
ACAACCCTTTCATCACCCAGGCCAAGGAGGGTTGATTCAGCCGAACTTTC
AACAGGGAAATTAGagtgttaATGAGAGAGGgaagacgatgagagaagtg
ctgctgtttataaatcatactttatcgcagaggtctccgtacgggaatgc
acacagagtgtactacgaagcgataaacGACCACCACGTGACGGCTACTC
CACATGTACACCACCCACAGCCACAAGCGTCGCATCAATACATTGCAGCA
ACGCCCGGCGGCGTTAACCAACAACAAGTTGTGATTGCCGCCCACCATCA
ACAAGCAGCCGCCCATCACCAACATGCGCCGCAAGTGGGTCCACAGGAAG
TTATTCAGCCTAATCAACCACAACAGACACAACCACATTATATTACAAGA
CCGGTATATCGAACGCAATCATATCCTTCCGCTGGCACGCCAATCGAGAT
GCAAAACAATTCACCCATATTGAGTAACCCAACATCGGTGTATCCGAGTG
CAGCAGCGGGTTATGTACAGAATCAACCGCAGATGTTTGTACTGAACACG
CAACAGTACCAGCAGCAGATGATGCAAGGTCAACAAGGACAACCTTATAT
GACGGCGCCTCACCCTTCCGCCATCCGTTTCATCAATCCAGCACAGCGCA
TGCCCAATACCGCCAATTTCCACCCACAAGATAACAATGCGACCATCGCA
TCAAGTTATATATTACAAGCGACACCTCATTCTGTGGCCACACCCCACCA
AACGATGGCGGCTTCCTACCAACAACATCAAACGCCCTCTTCTCCCGCCA
CAGGGGGCGCCGGTTCAGTGGTGGTCTCACAACATTACGTACCGTCCCAC
CATCAGCAATACGTTATGAATAACCAAAATACAAATTATCAACATGTTGC
GCACTCAATGCATTCACAAGGGAACCCAGCGGCGGCAGCAGCGGCAACGG
CCGTGTACCAGCAACGACCATCAGTATACACAGCGGGTGGACAACCTCAT
CATCAGCAACAACACCAACAACCGNCGGCCGTGTACCAGCAACGACCATC
AGTATACACAGCGGGTGGACAACCTCATCATCAACAACAACACCAACAAC
CGTTCGTCGTTATACCACAACCCTTTCATCACCCAGGCCAAGGAGGGTTG
ATTCAGCCGAACTTTCAACAGGGAAATTAGagtgttaATGAGAGAGGgaa
gacgatgagagaagtgctgctgtttataaatcatactttatcgcagaggt
ctccgtacgggaatgcacacagagtgtactacgaagcgataaacGACCAC
CACGTGACGGCTACTCCACATGTACACCACCCACAGCCACAAGCGTCGCA
TCAATACATTGCAGCAACGCCCGGCGGCGTTAACCAACAACAAGTTGTGA
TTGCCGCCCACCATCAACAAGCAGCCGCCCATCACCAACATGCGCCGCAA
GTGGGTCCACAGGAAGTTATTCAGCCTAATCAACCACAACAGACACAACC
ACATTATATTACAAGACCGGTATATCGAACGCAATCATATCCTTCCGCTG
GCACGCCAATCGAGATGCAAAACAATTCACCCATATTGAGTAACCCAACA
TCGGTGTATCCGAGTGCAGCAGCGGGTTATGTACAGAATCAACCGCAGAT
GTTTGTACTGAACACGCAACAGTACCAGCAGCAGATGATGCAAGGTCAAC
AAGGACAACCTTATATGACGGCGCCTCACCCTTCCGCCATCCGTTTCATC
AATCCAGCACAGCGCATGCCCAATACCGCCAATTTCCACCCACAAGATAA
CAATGCGACCATCGCATCAAGTTATATATTACAAGCGACACCTCATTCTG
TGGCCACACCCCACCAAACGATGGCGGCTTCCTACCAACAACATCAAACG
CCCTCTTCTCCCGCCACAGGGGGCGCCGGTTCAGTGGTGGTCTCACAACA
TTACGTACCGTCCCACCATCAGCAATACGTTATGAATAACCAAAATACAA
ATTATCAACATGTTGCGCACTCAATGCATTCACAAGGGAACCCAGCGGCG
GCAGCAGCGGCAACGGCCGTGTACCAGCAACGACCATCAGTATACACAGC
GGGTGGACAACCTCATCATCAGCAACAACACCAACAACCGNCGGCCGTGT
ACCAGCAACGACCATCAGTATACACAGCGGGTGGACAACCTCATCATCAA
CAACAACACCAACAACCGTTCGTCGTTATACCACAACCCTTTCATCACCC
AGGCCAAGGAGGGTTGATTCAGCCGAACTTTCAACAGGGAAATTAGagtg
ttaATGAGAGAGGgaagacgatgagagaagtgctgctgtttataaatcat
actttatcgcagaggtctccgtacgggaatgcacacagagtgtactacga
agcgataaacGACCACCACGTGACGGCTACTCCACATGTACACCACCCAC
AGCCACAAGCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCGTTAAC
CAACAACAAGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCCCATCA
CCAACATGCGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAATCAAC
CACAACAGACACAACCACATTATATTACAAGACCGGTATATCGAACGCAA
TCATATCCTTCCGCTGGCACGCCAATCGAGATGCAAAACAATTCACCCAT
ATTGAGTAACCCAACATCGGTGTATCCGAGTGCAGCAGCGGGTTATGTAC
AGAATCAACCGCAGATGTTTGTACTGAACACGCAACAGTACCAGCAGCAG
ATGATGCAAGGTCAACAAGGACAACCTTATATGACGGCGCCTCACCCTTC
CGCCATCCGTTTCATCAATCCAGCACAGCGCATGCCCAATACCGCCAATT
TCCACCCACAAGATAACAATGCGACCATCGCATCAAGTTATATATTACAA
GCGACACCTCATTCTGTGGCCACACCCCACCAAACGATGGCGGCTTCCTA
CCAACAACATCAAACGCCCTCTTCTCCCGCCACAGGGGGCGCCGGTTCAG
TGGTGGTCTCACAACATTACGTACCGTCCCACCATCAGCAATACGTTATG
AATAACCAAAATACAAATTATCAACATGTTGCGCACTCAATGCATTCACA
AGGGAACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCAACGAC
CATCAGTATACACAGCGGGTGGACAACCTCATCATCAGCAACAACACCAA
CAACCGNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCGGGTGG
ACAACCTCATCATCAACAACAACACCAACAACCGTTCGTCGTTATACCAC
AACCCTTTCATCACCCAGGCCAAGGAGGGTTGATTCAGCCGAACTTTCAA
CAGGGAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001982XLOC_001982Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003550-proteinTCONS_00003550-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003550-exon-sc0000030-1491911889:241339..241453TCONS_00003550-exon-sc0000030-1491911889:241339..241453Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:241339..241453TCONS_00003550-exon-sc0000030-1510915933:241339..241453Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:241339..241453TCONS_00003550-exon-sc0000030-1575043694:241339..241453Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1491911889:242144..242387TCONS_00003550-exon-sc0000030-1491911889:242144..242387Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:242144..242387TCONS_00003550-exon-sc0000030-1510915933:242144..242387Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:242144..242387TCONS_00003550-exon-sc0000030-1575043694:242144..242387Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1491911889:242810..242955TCONS_00003550-exon-sc0000030-1491911889:242810..242955Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:242810..242955TCONS_00003550-exon-sc0000030-1510915933:242810..242955Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:242810..242955TCONS_00003550-exon-sc0000030-1575043694:242810..242955Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1491911889:243658..243808TCONS_00003550-exon-sc0000030-1491911889:243658..243808Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:243658..243808TCONS_00003550-exon-sc0000030-1510915933:243658..243808Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:243658..243808TCONS_00003550-exon-sc0000030-1575043694:243658..243808Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1491911889:244027..244227TCONS_00003550-exon-sc0000030-1491911889:244027..244227Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:244027..244227TCONS_00003550-exon-sc0000030-1510915933:244027..244227Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:244027..244227TCONS_00003550-exon-sc0000030-1575043694:244027..244227Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1491911889:244939..245154TCONS_00003550-exon-sc0000030-1491911889:244939..245154Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:244939..245154TCONS_00003550-exon-sc0000030-1510915933:244939..245154Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:244939..245154TCONS_00003550-exon-sc0000030-1575043694:244939..245154Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1491911889:245741..245823TCONS_00003550-exon-sc0000030-1491911889:245741..245823Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:245741..245823TCONS_00003550-exon-sc0000030-1510915933:245741..245823Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:245741..245823TCONS_00003550-exon-sc0000030-1575043694:245741..245823Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1491911889:246887..247226TCONS_00003550-exon-sc0000030-1491911889:246887..247226Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1510915933:246887..247226TCONS_00003550-exon-sc0000030-1510915933:246887..247226Clytia hemisphaericaexon
TCONS_00003550-exon-sc0000030-1575043694:246887..247226TCONS_00003550-exon-sc0000030-1575043694:246887..247226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:241339..247226 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.472	45.3611	49.1316	51.8375	43.7653	32.6981	39.3682	51.0213	20.4554	33.3491	22.3727	13.5179	18.3822	20.5223	16.5077	24.0503	39.3161	36.9764	14.713	19.7868	22.1186	25.6086	35.3232	30.0798	38.1726	39.0482	29.7601	30.6182	38.2214	38.9589
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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