TCONS_00003549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003549
Unique NameTCONS_00003549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003549 ID=TCONS_00003549|Name=TCONS_00003549|organism=Clytia hemisphaerica|type=transcript|length=2341bp
CTATATCAAATTGTTTTGATCTATTTTGACTTTTCTGGGATGGTGGTGGC
TCTATTATTTGCATCAAGACACATTAACAAGAAGAAGAATCACAGTGGAT
TCGGTTCCGGTGGATCCAATTCTACAAACTGGCGTGAAACAACAAAGAAC
AACAACTACAATGATTTCGCTACGAACGGTTACAAAAACCATCATTTAAC
AAGCGCCTTCGTTACTCTGGTGGGACTAACAGTAGAAGTACAAAAAACAG
ATGGACACATTTATGAGGGGATTTTGGAAAGTGTGTCACCCGATCTTGAA
GTTCATTTATGTCATGCATCTTTGAAGTCAATAAATGGAGAATCGATAGA
AAATGGGGACTCTAACCAACATAAAACCCTTATGTTCCAATTTTGTGACA
TTGTCAGGTGCAATGCCAAGgaTGTAGACTTGGATTTTGCGAAGCGTCAA
AACTTGATGACAGACACAGCCATTTCAGGGGGAACTGGTACATTTGTGGA
ACGGGAACTTGTTCAATGGCAAGCCGATGAAGGGGACACGGTGGACGGCG
CCATCAATGAACTCGATACCATGGGGAACACTGGTGGATGGAAATTTGAA
GAGATGATCAAACAACATGAAGATAATTACGGCACCGAATCAACATTCGA
TAGCACTATGTCTAATTACATGACTCCCCTTGAGAACTATGATGAAGAAA
CAAGGCGAGCACTGGAAGAGAAAGCAGAACGGACTGCTCGCGAAATACAA
GGCGATACGAAACACAAAGAATTCGAACAGgCAGACAGTGGTCAAGGCGA
AGAAGAACTTTTCAGTGCTGTTCATCGTACACCTTCAAACCCTTCAAGTA
ACAACAACTCGTACCCAAACTCCCCTCGAAATGCCGATGGAAAACCTATG
GGCGGTGGTGCGCGAGGAGGAAAAAACGCCCAACAACCGCCTCGCTTTCA
ACACCGCAGAAGCCAAGACGATGTTACTGGAGGCGCACCCCGGATTCATC
ATGGCGGAAGCCAAATGCAAAGAGTCAATGGCGGCAGCCCAAGACACCCT
CAATACCAACAACAGCAACACGAATATTCGAACAATCGATCACCACAAAA
CCACCAATCAGCTTCACCCTACAATAGTCATCACCATAGTAACCATCATA
CTCACCATAGCAACCATAATGACCCTCATCACAAACAAGTACCAAGCAAA
AACCAACCCACCAGTGGAGCACCACATAATCACGCACAAAGCGTAGTGGT
CGACCCCAACATCCCTCCACCGTTGAAGTCCTATTCTTCAGTAGCAGCGC
GTAATAAACCAAGCGGTGGAATGCCCCCTCTACCAGGACAACAGCCTCAA
GGAGTACAAATCACCAATAATATTGGACAACAGCCGCCTGTCAACAATGG
GCGGCCGCCTATGAAAGCAGGTCCTCCCGCCCAAGCAGTGGAACCTCAAG
ATATAAGTAAAGCTCTACCCGTCAAACAAGAACAATTGCATAATGCAAAA
CAACAATATATCGCACAAGCTAAACAGGCTGTTGCTAAAAGTAACAGTAC
TCCTCCCGTTAATAAGCCACCTGTTAACCAAATGCCTATGTCAACTGGTA
CCCATCAAGACGCCCCTAAGGCGCCCACACAAGGCCCTCCCGGCTTGTCG
TTAGCTGCTGGATCCGCCCCGACGCCTACCTCAAACGCCCCGAAAGCTTC
GTATAGTAGTCGACTAAGTACGACGAACAAGACGGCGGCGGTTGAACACA
CGCGCATGGAGCAGATGCCAAGCACGACGCCAAGAGGACAGGGCGAAGTC
ATCAAGTTCGGAAAAATCAATAAGATTAATGAGGATGGTCGAAAAGAACC
AGATCTTaacaaattgaaagatttttcacACTCCTTCAAActtgaatcaa
aaataaaaaagactgAAGTGAAGACAGACACGACCGCTTCCACAACACAT
GTTGCTGTTGCAACCCCATCTTCCACGACCAAAGAAATTCCTGAAACTGT
TCTTTCATCTAAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCATCA
CAACCACGACTTCTACAACAACTACTACAACCTCTGCAACACGAGTCGCG
ACATCTGCAACCGACACTAAGAACGTCTCAACGACAACCCCGACAGTTTC
AACGACAACTACGACATCTGTTGTCTCTAGTGTTGTCAGTGCTACCGTCA
CAACCTCCTCTACGACACCTTCCAAGTAAGTATACTTGTACCTAAGAGTA
TTTTAAGaactctttctaattcgaattcCAGCTGGAGAACTAGCAAGAAC
GCGAACCGGAACACTATCTTCGTTAGATGAGATATACGAAc
Run BLAST on NCBI

transcript from alignment at sc0000030:222899..239829+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003549 ID=TCONS_00003549|Name=TCONS_00003549|organism=Clytia hemisphaerica|type=transcript|length=16931bp|location=Sequence derived from alignment at sc0000030:222899..239829+ (Clytia hemisphaerica)
CTATATCAAATTGTTTTGATCTATTTTGACTTTTCTGGGATGGTGGTGGC
TCTATTATTTGCATCAAGGTATTACTAATGGTACTTATTAaatattacac
ttttttatgagaacatccaaatctTTTTAatccttgggatgttcttaaca
ttttgggtttcaagcctaaaatgttcttaaaatgttcttacattCACTAT
TTTGCTCGTCTAATACACGTCAAGAAGTTTTTCACCAATGAACGCTACGA
TGAAATGATTTTAGACATTTGACGTCATTTGACCCCTTCAGACACCCAAA
ACAGTTTCTGATTGGTACATTATCTTCACAGAGAGCTCATTATGTTTTAC
CAAGGTCATTTGACGGCAACAGTTTCTGTTTCAAGGAGTCCATGTTGTAC
ATGACATTCTATAGTgtaatctccataactcgaacacacacgtaggggtt
ttgctttgtttttggtaggctggcgaatgaaaaattagcTCTGGCAATTT
CTAGATTCTTGCCCGGCGAATTCGCAATGTATTGATTAAcgtaaatatgt
acttgaggcggcGAACTGAACTTTTCGAACGGcgaattagaatttttttg
atcCTTGGAACGGCAAAATTCGCCGTTCGCCGGGCCTAAATAAGACCCCT
GCACACGGGGAACACAAGTTTGTTCGAATAGCGTTAAGTAATGTTATTGA
GTAACTTATTGGGTATTGTTAACTAACGGCCATAAAAATGGTgcaagtta
aggagacattcgagttatataGGTTTGAGTTAAAGAGCCACTGTGCTTTA
TTGATTCGTTAGATCATTTTCAGTCAATGTAGATGTCTATCCAAAATGTC
AGTGGTTGTAAAGCTTCTCGTTTTGCCTCTATCTAAAAAAGGTTCTTCAA
AAGTCTCTCTTTCTatcattttcagcattttgtcTAAAattgaaatcctg
aaaatttcacagaaTTACTAGCTCTCGCAAATACTATAACTGCAAATCTC
AGACCACTTTTCTTTGCTATTTTAACCCCTGCTATTTTTGTTCCCTTTTT
TCCAGACACATTAACAAGAAGAAGAATCACAGTGGATTCGGTTCCGGTGG
ATCCAATTCTACAAACTGGCGTGAAACAACAAAGGTCAGTGTTTTCTCTG
CAAGATCCCACTTTCATTTTGTATCTTTGTAAGTTGTGAAAGTCAAGGCA
CTctatagtaagtaagtaagtctgtgacCCCAGtcagaggcgacccgaag
gctcttcGAAggctttcgatagctatctacccgaaggtagggaagggcgc
cactctttttccttggattgctccacttacccttgatccttctcttaatt
gctgggCCTCAAGCAGACATGCATCAaataccattttgggaatctttggt
atgacccggctggggtttgaacccacaaccttgcgaacagTAGCCGGgcg
ctctaccactgcactacggtcggcACTCTATGGTCGCTTTCCTGTCACTT
ATAAATCAATTAGCGTGTAAACGGAATAGCTTTAATCGACcatcaataat
attttttcataatatGAACCTTACTCGTTTCATCATATAGTATTTTGAGC
TTATTTTTCTTGCTTTCTTTCAGAACAACAACTACAATGATTTCGCTACG
AACGGTTACAAAAACCATCATTTAACAAGCGCCTTCGTTACTCTGGTGGT
GAGTTTCGTCTTTGTTTTCCAAAGTTATGAAAACCGAATCTGCTCTTTTT
ATGCTAGCCTGGGGTTCACTATTTGATAGACTAATTaccgcgattaagtg
gcccggtagtatatagTAGTTCTCAATTTTGATCTTAGGTGGACTGTTCG
AACGTTGTCGACAGtttctagtctacttcactgaacTCAGCGTCATTAAG
GAGCGATgaccaagtggtcaaaggcgtcagtgTCTCAAACCAGGGGTCCG
CGGTTCGAAttcccgctccttccaatgttccgttcagttcatagaaaGCC
GATTaagctggccgtggaccccatgaaaacaatcgaaagactgtctagaa
gtcctagattactgagCTATCCacataaaatatcgactctatcaatgtta
acaaaaaagcaaagttcagccagaagtagactcttcGGTTGGTGCggtat
tttcatttcattttctagTCCCCACACTTCGCCCAAAGTTTTGAGTAGAA
GGAGAAATGACTATTAATTCTCATAATCACCACTCTTCATTCTCCAGGGA
CTAACAGTAGAAGTACAAAAAACAGATGGACACATTTATGAGGGGATTTT
GGAAAGTGTGTCACCCGATGTAAGTGTTGTTAAGAAGAAAATATGTGACT
TCGAAAGTCTTGTTTGCACTCGACTAGTCATATTACCTTATTCAGGCAGT
TTTAGGATGTCTACGGCCTTGAAAACTGTTAAAATTTGATCTAAAACGTG
AATATAAAATTTTCCACGAGAAACTTTAGCTTTAGTATTATCAATAAGAC
ATTAGGGATTTGCTTGACTCGCAAACATCTTATTACCTTTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
ccccccccccccagcggtaactctggtcacgcaattttttgtcttcaact
tCGATCACATAAAACAGCAGAAAACTTTgataatcacgcatccctttgaa
aaagtccaaatcacgcatcacggctcaaaaatctttcaaatcacgttTTA
TCACAAAATCGcgaagaaaaaaattcgaaatcgCGCAATCATTCTAGAAA
AAAGTCCCGATATCACGCAAGCGGTTTGGGGGACTTTTAAGCCAATCAGA
GTATTAGAAAATAGTAGAAAATAATGTGAAAACATAAAATCGGTGAAAAC
ATTCCCATAGTTACCCTATCTTTTGAGGTTCTTCTTATTGGCGTGGAAGT
CTTTAGCACGAATCTCATGTTTATTTTGGAAGTTtgctaccttatcgggg
aaaacttcgtcggagaaaattttcgtcgtggaaaattttcgtcacttgct
ggtagttggtaaacgcattaaggccgggaaaaatattcgtcgcttggtca
aaatttcgtcacttttccccgacgaagttttccccgataaggtgtCAACT
GAGGTTGAGAGTTGCTTATACCACTACGCTTCTTGCTTTTCCTGTTTATA
TCACCCCGTCTCTATGAAATATAGTGGAGTTTCCAGAACTTGCACACgaa
cggggaacacaaatttgttcgagttaaggaattTCAAGTTATGAAGTAAG
GCTTAGACCATGTtaagacgttacggttccgctccgttccgttccgaaat
GGTTCCGGAACAAGTGTGAAcctcaaaaaagaagacgttacaaagcaaaa
cagatcgaaacggtttcgctccacttttttcatcggaacggaactgctcc
gttttcttgcttcaaaacgttccgaaaccaatatgaacaaattcgtgtga
acatggtcttataaggcattgttaactgacgtttcgaattttgacgttcg
aacttgtttcggaacggaacggaacggtaacgtctgaacatgatctgagg
gaccataaaacttgttcgagttagggACTCGTTCTAGTtacagaggttcg
agttaaagagactccgctGTAATTCCTTTGCATCTTTCGCCGTATATTGT
GATGATCAAACTAtcaacttggtctaatgtcgactcccctcctctaattc
cgacaccctttttatcagctgaaattgatagaaaggttgaaatttatttt
tctttgcttagtggtcagagagtaataatcctttttcaatcagtggttca
agctttcatattatttctTTCTCCGAAGAAGGCtgtcggaattagacaag
ggatgtcgatattagaccaacttgtGGTACTCTTTGGAATGAAGCCATCT
GACTCTTGATATTCTGTTTCTTTTCAAGCTTGAAGTTCATTTATGTCATG
CATCTTTGAAGTCAATAAATGGAGAATCGATAGAAAATGGGGACTCTAAC
CAACATAAAACCCTTATGTTCCAATTTTGTGACATTGTCAGGTGCAATGC
CAAGGTAAGATTCTCGGTGGATACCATAAGCGAACAAATTTTCgcggcaa
aaaaattttcgtggattttaatttcgcggatttttgacacattccaaaat
ttaaaaaaaatcacataaaattggtctttttagggcaaaatagaaattaa
attctgcaaaaatttctttccgtgaaaatttcttccctttagaaaaaatt
catctttttgatTGTCTTCCAATCATTTTTAAGTAGACACAGACGTTTCC
TTAGCGTCCTGGATTTGTAAAGTTCGTTCTAAAGTTTTTTCTATGCTatg
aaaacacaagaaaaagaaatagaaagtttcTTTTCATCGCAGTTTTTGTC
TGTCTGTTCAAGGCCTATAGAAATGACTGTTTTTTACTCAAACTGTTTCC
NCTTTTCGTCGCAGTTTTTGTCTGTCTGTTCAAGGCCTATAAAAATTACT
GTTTTACACTCaaactatttttgtttttaggaTGTAGACTTGGATTTTGC
GAAGCGTCAAAACTTGATGACAGACACAGCCATTTCAGGGGGAACTGGTA
CATTTGTGGAACGGGAACTTGTTCAATGGCAAGCCGATGAAGGGGACACG
GTGGACGGCGCCATCAATGAACTCGATACCGTAAGTTATTTGGAACACAC
TGTAAAGTGTAATGGAAtacgaaatttttttaaattcaatttttggcGTA
AAATACCGTAAATTTGCTATTTTGGACGATAATTAAAACACTTCTTAACT
GACCTTTGGCTGATTGGCGAAAATAAAtacagaaaatttcgcgattgaat
taatctgaattgaaaaattcaatatttccTTTGATCCTTTTGGATGATTA
TTATTATATGGTGATTTTGGCTACGCTTATTTCCATAGCCCATGTTTTAC
GCTAAAGAAACGGATTGTTCTCGCAAGTCTCtgtttgaattcgaaatttg
tGGCGATTTTGTTTTCATCCTTGCTTATAATGATTCATTCTTGATAatat
cttataaagaaaattattttttataatcGACGTGACCTTTTCAGGGAATT
CAAGGTTTtagttttaatatttttttactgCGACATTTAATATAGCAAAT
TTCGTTGACTTTTACTAGATGGGGAACACTGGTGGATGGAAATTTGAAGA
GATGATCAAACAACATGAAGATAATTACGGCACCGAATCAACATTCGATA
GCACTATGTCTAATTACATGTAAGATTCTATTTTAGAGACCGAAACAACT
GTTGATAACATTGTGTTGTATACAACAAAGCTAGAGTGGAATGCTGTTCG
TGCAATCAATAATGAGTAATAGactattttgaatgaaaatcaaTTGAAGA
ATTTGTGTACAACAGAAGTTGGCTTGCAATAAGTTTGCCAAAACTCTTAT
TATTCAAAACCTGAAACAAATCACgctgattctttttttttatcgtTTCT
CCCGTCTCTAAATAATGATCACCATAAAGAATGTGCCTACGTCGTGTGTA
CttcaaaaatagataaaatgaTATTCATGAAGTTAATTAAAACagaataa
aagtaaataaaaagatGATTTAAAACATGCTGTTTTGTTTAAGTTGTAGT
TGTTTACATAATGAGAACCAAGATCTTGGTATATGAATACTAAAAGGGGT
TTCGAGAAACGTTTGCATACCACCACCCCCATTTTAgagaagtggtattt
tagtacccatGTCATGTACTAAGATTTTTAGGGACATTGAGACACAGCAG
GACACAGACTGGGTCTTTTCAGGACAAAATTTTGTCTTCTCGGGACGATT
TTTCTCAAAAGAGCTGATTTTTGCAAtttaaatattcattttttgcaaaa
attgatacttttaaCCAATGCTGCTTTATGAATTGAGCAAACTTAAAGAC
CTTTGACTGAATGCAAAAATAAATGaacttgggaaattttctttaaatga
gAAAATATCAATGATAAAAATCGCTGATTTTAGTAAcaatttactaaaaa
aaatcgtaaattttaGTCTGGATAAtcacctttttggtattttagtaccg
cATGGTACTTAAaggattttgaagttttttgggttttcatgatatgcacc
actggagagtcttctgagaacttttaaaattttccactcaatacgtcact
taaacaatagaaaaagtgacgtattgggtggaacaaaaacggaaaagttg
cataatttcgtgaagtcattgcagtggtgcatatcatgaataccacCATG
ACATTAAATATCATGATGTCCTAGATTTTAGTACTGAGAACCTCCTCGAT
GTTTActctaaaaaactaaaaaactctaaaaaactTCCAGTCTCCTTTTA
ACCAAAAAATGAGtcataaattttctttctaaaCAGGACTCCCCTTGAGA
ACTATGATGAAGAAACAAGGCGAGCACTGGAAGAGAAAGCAGAACGGACT
GCTCGCGAAATACAAGGCGATACGAAACACAAAGAATTCGAACAGGTTGG
TCTCCTCTTCTAGTCTAGTCTTCTTCTGATTTGAAAAGTTTCAGTTGAAT
TtttgacgtaatgttttataggGTGTTTTGGGTGcatccgtataaaacat
tacgtcatgaataaaAGCATGTATGGACCATATATTTGTATCAGTTATGC
TCATTAGATTGTATCAGTTGTAGATAGATAAGATGGAACTACAACCTGTT
ACAGTGGAGTCTTCATAATTCTAacccgcacggggaacacaaatttgttc
gagttaaggaaattccgagttatggagtaaggtctatgaggtattgttaa
ctgaaggggcgAGAATATTTGAGATTCGAGTTAAGGTGATATAGGTTCGA
GTTACAGAGGCTCGAGTTAAGAGACTTTGCTGTAATTACGGTGATGCGAT
ATCtaatttttgttaaatattctcttttcaaaacaggCAGACAGTGGTCA
AGGCGAAGAAGAACTTTTCAGTGCTGTTCATCGTACACCTTCAAACCCTT
CAAGTAACAACAACTCGTACCCAAACTCCCCTCGAAATGCCGATGGAAAA
CCTATGGGCGGTGGTGCGCGAGGAGGAAAAAACGCCCAACAACCGCCTCG
CTTTCAACACCGCAGAAGCCAAGACGATGTTACTGGAGGCGCACCCCGGA
TTCATCATGGCGGAAGCCAAATGCAAAGAGTCAATGGCGGCAGCCCAAGA
CACCCTCGTAAGTTTAAATATTTATTGACTTTCTTTTTCTCGTGATTATC
GCCCCACCTTATTTTCTCTTATCATTTTGACTTTGGTACTAATCTTAATT
ATCCACGTAGATTTTATCCATCAATACAAtgcacctttttgaccgtagta
gcgcgggcatttttttctccgctttatcccactaaaaccatcccaatcct
tttttgacgcatttttccattgtctattggtgcgaaaaaaggactgggac
ggttttattgggataaagcggacaaaaaaatactcgcgcggcaattggtg
gctacggtcgaaaaggtgtataactGGATAGTAAAAAAGGGAAAGATAAC
TAAAATTCTTCGACTCAAGGTGATTTAAATGTGAATTTATTCAACTGTTT
GACAACTTGGAATGACTGGGCTGATTTTTACAATTagttataaataaaat
attccaCGGCTAAAATTGTGGAATGTACAAAATGAATGAATAAgtgaatg
aataaatgaatgTTACATGCATGTTACACGATGTTACAGTTCCTGAAGTA
AGCAAAATAGTCTTTTTGATAACTACTTTTCTATTTCCAACAATGACAAG
AAAAGGAAACTGTCACGGTCAATCTATGTGTAATCGACCATTACTTTGGG
CTCCATTTGGCGGGTTATTTTCACTTCCATTCTCCTGGGTATTTGCAAAT
CCAGCTGCCTCTAGATGCGAACTTTCAACTGGAGATCTTCTCCTTGTACA
TTGTATCTCCACATTTCCAATATCCTGTTGACGAACCTCTGGTAGTGTAG
AGTATCTCACCAATCCACAAATAATAAAAGTAGACTCCTTGTCTGTCTTG
ATAAAGACATCGCCTCGAGAGGCAGTAAAAGTAGTAGTCCTCTCCACTTT
ATCGCCCATGTTGAAATAGCTCATTTTCCAGTATCGATTTCTGCTTTTAT
AGTTAATGACGTCACACACTTGTTGTCACACACTTGTTGTCACACACTTG
TTGTCGAGCTTTTTATTCTCTCAAAATACAGATTCGTTGTCCGTTTGAAA
TTTCCCTGAATGCCTTTTGTCGTGTTGGTGTATTCTACTAAACTACTACT
CTttattactttcaaataaatccTGCAGTTGTGACCTTGATATGATTATT
ATTATCAAGtctatttcgatatttttttataagcacattaccaattactt
agttattagcttttctggagattggctcattcgttctttatgattttttg
cacaaatgtgcctaactataaaccctcgaatgtaacgaagcccgattttt
ggaaaaacaatttggggggggggcaaattctagccaaaaaacggctaaaa
aagggtttttttggactttgttgaaaactggatcattaattttccagatt
tttcgcATGAAAGGTGGGTGCCATCATCGGTATAAGATTGTCGAAGTAGA
TTTTCACACAAAAAATTAATCGCTTAAAGAATGGAATCTTAATtcataag
aatcactatttataagcatacatcgatgttcttactagtcaaattactca
attttttgatgatataaatattttttttttactcatgaaggcttaatttt
gaagaatatttgtgtttaaacatgaaatttttgcTACTagacgtgttttt
atagaaaaagtggccaaattcgatatttttttataagcacattaccaatt
acttagttattagcttttctcgatatTGGCTCGTTCattcttaatgattt
tttgcacaaaagtgCCTAACTATAAAACCTCGAATGTGACATAGCccgat
tttgggaaaaaaatttgggggcaaattccagataaaaaatgttttttttg
gattttgttgaAAACTGGATCATTAATCTTACCTGATTTTCTGcttgaaa
gtagggtaccaccATCGGCAAAAGATTGttgaagcagattttcacaaaaa
cattttctcgcctcaataattgaatttttttccataaaaatCACTATTTA
CAAGCatgcatcaatgttcttagcNAAGAACTTTTTGGGGTCCTATCATC
ACTACtaacatcctgtgaaaatttcgGACCTCCAAGTTAtcccaatcaaa
atttagcttttttgaaaatgccaaaaactaaacaattaaaaaacatgtcc
atatTGGCTCGTTCattcttaatgattttttgcacaaaggtgcctAACTA
TAAAACCTCGAATGTGACGTAGCCCGATTTTatgggaaaaaaatttgggg
gcaaattccagctaaaaaatgttttttttggacttgttaaAGATTGTTaa
agcagattttcacaaaaacattttctcgcctcaataattgaatttttatc
cataaaaatcactatttataagcatgcatcaatgttcttagccaaattac
tcaatttttcgatGAGATGGACAGGAAAATTACCCTCCAGACAATTACCC
TCCAGACAATTAAATTTATGGTGATCAAATAACTCAATTGTAgccttaat
gttcttataaaaaaaacttatctttggaatttcctgaatttttgaaagat
attttgaagttttgtgAAGGAAAGTTAATTTTTGGTCATACATGTTTGTT
TACAGTTAGTGGTTGTATGATGCAGACAATTTTCTCCTGTAAATGAGACC
CGAAATGAgtaatttgaatgaaaaatggctttttgaaaaatcttactATT
AACAGCATCCTTTCATACACTTTCATACAGCATTCTTAAAACTACATTTG
CAACAAGACGAATAGTAAAAAGACTAACTGTAACGATTAAATTGTCTCGA
AGGTAATtgtttgggaaattttttttttttgggggggagggggtggtaAT
TCTCTGGGGCCAATTGTCCTAAAATCTAATCGGGCTAGAGTTTCAATCTA
TTTATCAGGTTTTTTATACTGCTTTGTTTTCTTTATATTCTATAGAATAC
CAACAACAGCAACACGAATATTCGAACAATCGATCACCACAAAACCACCA
ATCAGCTTCACCCTACAATAGTCATCACCATAGTAACCATCATACTCACC
ATAGCAACCATAATGACCCTCATCACAAACAAGTACCAAGCAAAAACCAA
CCCACCAGTGGAGCACCACATAATCACGCACAAAGCGTAGTGGTCGACCC
CAACATCCCTCCACCGTTGAAGTCCTATTCTTCAGTAGCAGCGCGTAATA
AACCAAGCGGTGGAATGCCCCCTCTACCAGGACAACAGCCTCAAGGAGTA
CAAATCACCAATAATATTGGACAACAGCCGCCTGTCAACAATGGGCGGCC
GCCTATGAAAGCAGGTCCTCCCGCCCAAGCAGTGGAACCTCAAGATATAA
GTAAAGCTCTACCCGTCAAACAAGAACAATTGCATAATGCAAAACAACAA
TATATCGCACAAGCTAAACAGGCTGTTGCTAAAAGTAACAGTACTCCTCC
CGTTAATAAGCCACCTGTTAACCAAATGCCTATGTCAACTGGTACCCATC
AAGACGCCCCTAAGGCGCCCACACAAGGCCCTCCCGGCTTGTCGTTAGCT
GCTGGATCCGCCCCGACGCCTACCTCAAACGCCCCGAAAGCTTCGTATAG
TAGTCGACTAAGTACGACGAACAAGACGGCGGCGGTTGAACACACGCGCA
TGGAGCAGATGCCAAGCACGACGCCAAGAGGACAGGGCGAAGTCATCAAG
TTCGGAAAAATCAATAAGATTAATGAGGATGGTATGGCTTTTTTTTGTCC
ATTGCTTTTTAACAACTCTTTTTGTAAATCAGAGCAGGTCCCATGCAGTA
CTATTACAGGTTTAGCGTAAAGTTTTCCCAGAAATAAACGGATTTATGCC
AAGAAATGATTTCAAAAGAGAAAGAATTCTCgtaaaaaacgctaatttca
TACCTTCGCACCTCGAAGATAAGTTTTGTCAGAGTACTGTGTTAACAAGG
ATCGCAAGATTGACAGTTTAAAATGGTGCCAGATCATTTTTGTCCATAAT
CGAAGATATAGTCGATATTTTACAGCAATATATGAACTCTAACGCGGCGT
TGGAAGTGGTATAGGTTCGTGGGGTTGGCGCTTTTAGACGTCTCAGCCAT
CGTTCCAgccattgggccattccattttatctcCATACAGGAGGGGGGGG
GGGACAAACATTTCCAGGGGGTAACCTGAGAAGAATTTCCAGGGGGGGTC
TAAAGGAGTGTTTTTTTTTCCAGGGGGTAAATATAGTTATTCTAAAATTT
GGACAAGACAAGTTTTATTTCGTCCACTGTCACTTTAAAGTATAAAATAA
AACTTTTCCGAGGGTTATTTTGCAAATTTTGCTATTTTCCAGCGGGTATC
CTCACATTTCCAAGAATTTATTCTTGACTTTAAAAGGTTCGTCCCCCCCC
CCCCCCTACCctgtatcaatttttaaatggaacagcccattggtgtcgtt
gattttttctgaagatGATCCTTCTTTTCTTTACTTGCAGGTCGAAAAGA
ACCAGATCTTaacaaattgaaagatttttcacACTCCTTCAAAGTAAGTA
ATGCATGAATGCTTctgcacgcttttttttataagaatatgttctataag
aatatcagggtgctAAATTgaccaaatcgtaagaataccctgagaatacc
ctctagggtgaataTCACAGagtttgataagaatacaatcattttgtatt
tggttgaCAGAAGCTGCTTCTtttgttagacttgaatttgaactttgagg
cagaaatgtaaGTTTTGCTccaaatgttcattcaaaagccccgaaactct
caaattgatcatttctcatgtttgtaaaaagtcaagtctaaaaaagtaag
aatacttgaccctcattcaaagtacactattcttattaaaagaaagcgtg
tattttaccgatggtttgtttttttgggaacAGTTTAGTAGAGTGTCCAC
TTTTTATGTTCTTTTTGCCATATTGCAAATAAAACATTGGTTTTTAATTA
CAGGCATATGtcgatttattttcatttatttttattggcccagcgctaag
cgagtgggcctttcatttgcaacgttCTGTTCGTACgtgtgtctgtccgt
ccgttttggtagaaacggcgcttaaaaccNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ccgaggaGAGTATTCAACCGGATGAGCCTTATTCGCCTGTGTAGTCCCGG
TTGGTAGGggaccattcaataaaatttcaagcgtataaccaatgagaagt
accgcgtttattttgaaaaaatttttcctgtcttcactttgatccatgtc
aacggggtcatacatttgctgttttgtaCGCTCgatttcaacacgttact
tttcgctgggccttcacgcccaacgggcttcttgtttttatttatttgtt
tattagatttatttttttgcgATAAACAAATTCGCGACGAACTTATTTTT
TCCGGTCTTAGGTTAAGCGAATAATGACTGTATCTAGTGGTACggatttg
ctaccacctcaagcaaagccaaaaaatggaGCCTGCCAAATTACatcggg
ccacttatcagcgccatccagtctatcaaaaagctttaattgACCCCCGG
GCTATGATTTCCCAGCCTTTcttcaaaaaaagtaaaaaaagttgGAAAAC
TTTCGTTCATGCCAAGGAGATCTGGAGGTATCCACGACAGTTAGTCAGAA
AATTGACTTGTCAAAGCTTGGATCAAGTCGGTTCCAACAAGTTACCATAA
AAGTTACCCTCAGAAAAACACACAGTTTCTATTGCATCTTTAGCTACCAC
CCACCCCTTCATTAGTCTGAATATTATTAAAAAGAGAGTTTTTAGAAGCT
CCCAAAACTATAcggcaaaaattcaaaataaatttcgaatatTCTAATAC
TTCgacataccttatcggcccttattGGTTTTATTTTTGCGTCGCTGaag
taataagggccggcgcaAGGGGCTGGTTTTAAATTAAAGACGACCTAAAA
AGGAcagaaattgagttttgatgtaataagggccggcgttgaAGGGgtcg
gcgttaaattagggccagCGTAAGAAGGGGTCGACGAGGTAGCTGCTTTC
AACCAATAAATTGCAGGTCTTCGGTATCGGGGGAATTGATATCTcacaaa
attttcttataattttagcttgaatcaaaaataaaaaagactgAAGTGAA
GACAGACACGACCGCTTCCACAACACATGTTGCTGTTGCAACCCCATCTT
CCACGACCAAAGAAAGTAAGGCGGTCGTCGAAGAAACAATCACGAAATCT
GTTGCAAATGTTGCTTTATCTGCACCAGGTATATAGTCTCGACGCCCATT
GATGTCATTTCTACAGCGGGGTGTATTTTTTTAAGTCTTTTCAATAATTG
ATATTGAACTATTTCATTCGGTACCAATGACATAATTTGTATCAAATAAT
TCATATTTTGTATAGAATTCTGAGTTTGATACGGACTAGTACAATAGTCG
TCGAGAAAAACTCATTTTAAGTAAAATACTCAAAACAAACTCAAAAGTAA
TGATGGTGCATGGTCCGTTTTCCTCAAAAAgtgttgttttaaaaatttca
accttttttttctGTCTGTATTTACAGTTCCTGAAACTGTTCTTTCATCT
AAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCATCACAACCACGAC
TTCTACAACAACTACTACAACCTCTGCAACACGAGTCGCGACATCTGCAA
CCGACACTAAGAACGTCTCAACGACAACCCCGACAGTTTCAACGACAACT
ACGACATCTGTTGTCTCTAGTGTTGTCAGTGCTACCGTCACAACCTCCTC
TACGACACCTTCCAAGTAAGTATACTTGTACCTAAGAGTATTTTAAGaac
tctttctaattcgaattcCAGCTGGAGAACTAGCAAGAACGCGAACCGGA
ACACTATCTTCGTTAGATGAGATATACGAAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001981XLOC_001981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003549-exon-sc0000030-1491911889:222899..222966TCONS_00003549-exon-sc0000030-1491911889:222899..222966Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:222899..222966TCONS_00003549-exon-sc0000030-1510915933:222899..222966Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:222899..222966TCONS_00003549-exon-sc0000030-1575043694:222899..222966Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:223954..224032TCONS_00003549-exon-sc0000030-1491911889:223954..224032Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:223954..224032TCONS_00003549-exon-sc0000030-1510915933:223954..224032Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:223954..224032TCONS_00003549-exon-sc0000030-1575043694:223954..224032Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:224522..224596TCONS_00003549-exon-sc0000030-1491911889:224522..224596Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:224522..224596TCONS_00003549-exon-sc0000030-1510915933:224522..224596Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:224522..224596TCONS_00003549-exon-sc0000030-1575043694:224522..224596Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:225146..225217TCONS_00003549-exon-sc0000030-1491911889:225146..225217Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:225146..225217TCONS_00003549-exon-sc0000030-1510915933:225146..225217Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:225146..225217TCONS_00003549-exon-sc0000030-1575043694:225146..225217Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:227077..227202TCONS_00003549-exon-sc0000030-1491911889:227077..227202Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:227077..227202TCONS_00003549-exon-sc0000030-1510915933:227077..227202Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:227077..227202TCONS_00003549-exon-sc0000030-1575043694:227077..227202Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:227679..227828TCONS_00003549-exon-sc0000030-1491911889:227679..227828Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:227679..227828TCONS_00003549-exon-sc0000030-1510915933:227679..227828Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:227679..227828TCONS_00003549-exon-sc0000030-1575043694:227679..227828Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:228317..228417TCONS_00003549-exon-sc0000030-1491911889:228317..228417Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:228317..228417TCONS_00003549-exon-sc0000030-1510915933:228317..228417Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:228317..228417TCONS_00003549-exon-sc0000030-1575043694:228317..228417Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:229585..229693TCONS_00003549-exon-sc0000030-1491911889:229585..229693Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:229585..229693TCONS_00003549-exon-sc0000030-1510915933:229585..229693Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:229585..229693TCONS_00003549-exon-sc0000030-1575043694:229585..229693Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:230135..230405TCONS_00003549-exon-sc0000030-1491911889:230135..230405Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:230135..230405TCONS_00003549-exon-sc0000030-1510915933:230135..230405Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:230135..230405TCONS_00003549-exon-sc0000030-1575043694:230135..230405Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:233344..234129TCONS_00003549-exon-sc0000030-1491911889:233344..234129Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:233344..234129TCONS_00003549-exon-sc0000030-1510915933:233344..234129Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:233344..234129TCONS_00003549-exon-sc0000030-1575043694:233344..234129Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:234889..234941TCONS_00003549-exon-sc0000030-1491911889:234889..234941Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:234889..234941TCONS_00003549-exon-sc0000030-1510915933:234889..234941Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:234889..234941TCONS_00003549-exon-sc0000030-1575043694:234889..234941Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:239017..239113TCONS_00003549-exon-sc0000030-1491911889:239017..239113Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:239017..239113TCONS_00003549-exon-sc0000030-1510915933:239017..239113Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:239017..239113TCONS_00003549-exon-sc0000030-1575043694:239017..239113Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1491911889:239476..239829TCONS_00003549-exon-sc0000030-1491911889:239476..239829Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1510915933:239476..239829TCONS_00003549-exon-sc0000030-1510915933:239476..239829Clytia hemisphaericaexon
TCONS_00003549-exon-sc0000030-1575043694:239476..239829TCONS_00003549-exon-sc0000030-1575043694:239476..239829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:222899..239829 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5475	18.8335	14.6678	21.0968	20.1455	14.01	22.3686	22.0466	10.1367	16.6401	10.6558	8.91539	11.6914	11.0814	9.25484	13.4108	22.3494	23.4461	2.76377	6.88617	12.601	15.0647	13.9143	14.8879	25.6228	22.2867	16.5541	12.2543	16.5436	15.5427
Blast
[Close]
BLAST of TCONS_00003549 vs. Swiss-Prot (Human)
Match: ATX2 (Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.872e-25
Identity = 74/222 (33.33%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:  181 YKNHHLTSAFVTLVGLTVEVQKTDGHIYEGILESVSPDLEVHLCHASLKSINGESIENGDSNQHKTLMFQFCDIVRCNAKDVDLDFAKRQNLMTDTAISGGT-GTFVERELVQWQADEGDTVDGAINELDTMGN--TGGWKFEEMIKQHEDNYGTESTFDSTMSNYMTPLENYDEETRRALEEKAERTAREIQGDTKHK---EFEQADSGQGEEELFSAVHR 828
            Y N  +     ++VG   EVQ  +G IYEG+ ++ SP  ++ L  A  KS    S    +    ++++F+  D V    KD+D  +AKR +  TD+AIS    G   E++L  W A E      A  EL+ + N  + GW   +M + +E+NYG  ST+DS++S+Y  PLE  + E     E +A + A EI+   ++K     E  D  + EEE ++AV R
Sbjct:  263 YANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIM-ESILFKCSDFVVVQFKDMDSSYAKR-DAFTDSAISAKVNGEHKEKDLEPWDAGELT----ANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDD--RSEEEKYTAVQR 476
The following BLAST results are available for this feature:
BLAST of TCONS_00003549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATX27.872e-2533.33Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2[more]
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