TCONS_00003548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003548
Unique NameTCONS_00003548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003548 ID=TCONS_00003548|Name=TCONS_00003548|organism=Clytia hemisphaerica|type=transcript|length=2682bp
AAATCTGAGCTTGTAATACGAGACTATTTTATTATAGCAAGTTTAAAAAC
AGTCTGCACATGGTGCCTTATGATAATGTTATCAACGTGACTTTTATAGG
ATTGttgcaataattttttttgcaatgtaAAATGgctttcttagaaaaat
tacACACAagagtttttttgtttatttactgATTAACCACATATTTTTAT
CCTGGACACAATAAAAATATACCTGAAAATTCGATTTAATTAGTATTTTA
ATAAATGTGAACACCTGGAACGATAAATCTATATCAAATTGTTTTGATCT
ATTTTGACTTTTCTGGGATGGTGGTGGCTCTATTATTTGCATCAAGACAC
ATTAACAAGAAGAAGAATCACAGTGGATTCGGTTCCGGTGGATCCAATTC
TACAAACTGGCGTGAAACAACAAAGAACAACAACTACAATGATTTCGCTA
CGAACGGTTACAAAAACCATCATTTAACAAGCGCCTTCGTTACTCTGGTG
GGACTAACAGTAGAAGTACAAAAAACAGATGGACACATTTATGAGGGGAT
TTTGGAAAGTGTGTCACCCGATCTTGAAGTTCATTTATGTCATGCATCTT
TGAAGTCAATAAATGGAGAATCGATAGAAAATGGGGACTCTAACCAACAT
AAAACCCTTATGTTCCAATTTTGTGACATTGTCAGGTGCAATGCCAAGga
TGTAGACTTGGATTTTGCGAAGCGTCAAAACTTGATGACAGACACAGCCA
TTTCAGGGGGAACTGGTACATTTGTGGAACGGGAACTTGTTCAATGGCAA
GCCGATGAAGGGGACACGGTGGACGGCGCCATCAATGAACTCGATACCAT
GGGGAACACTGGTGGATGGAAATTTGAAGAGATGATCAAACAACATGAAG
ATAATTACGGCACCGAATCAACATTCGATAGCACTATGTCTAATTACATG
ACTCCCCTTGAGAACTATGATGAAGAAACAAGGCGAGCACTGGAAGAGAA
AGCAGAACGGACTGCTCGCGAAATACAAGGCGATACGAAACACAAAGAAT
TCGAACAGgCAGACAGTGGTCAAGGCGAAGAAGAACTTTTCAGTGCTGTT
CATCGTACACCTTCAAACCCTTCAAGTAACAACAACTCGTACCCAAACTC
CCCTCGAAATGCCGATGGAAAACCTATGGGCGGTGGTGCGCGAGGAGGAA
AAAACGCCCAACAACCGCCTCGCTTTCAACACCGCAGAAGCCAAGACGAT
GTTACTGGAGGCGCACCCCGGATTCATCATGGCGGAAGCCAAATGCAAAG
AGTCAATGGCGGCAGCCCAAGACACCCTCAATACCAACAACAGCAACACG
AATATTCGAACAATCGATCACCACAAAACCACCAATCAGCTTCACCCTAC
AATAGTCATCACCATAGTAACCATCATACTCACCATAGCAACCATAATGA
CCCTCATCACAAACAAGTACCAAGCAAAAACCAACCCACCAGTGGAGCAC
CACATAATCACGCACAAAGCGTAGTGGTCGACCCCAACATCCCTCCACCG
TTGAAGTCCTATTCTTCAGTAGCAGCGCGTAATAAACCAAGCGGTGGAAT
GCCCCCTCTACCAGGACAACAGCCTCAAGGAGTACAAATCACCAATAATA
TTGGACAACAGCCGCCTGTCAACAATGGGCGGCCGCCTATGAAAGCAGGT
CCTCCCGCCCAAGCAGTGGAACCTCAAGATATAAGTAAAGCTCTACCCGT
CAAACAAGAACAATTGCATAATGCAAAACAACAATATATCGCACAAGCTA
AACAGGCTGTTGCTAAAAGTAACAGTACTCCTCCCGTTAATAAGCCACCT
GTTAACCAAATGCCTATGTCAACTGGTACCCATCAAGACGCCCCTAAGGC
GCCCACACAAGGCCCTCCCGGCTTGTCGTTAGCTGCTGGATCCGCCCCGA
CGCCTACCTCAAACGCCCCGAAAGCTTCGTATAGTAGTCGACTAAGTACG
ACGAACAAGACGGCGGCGGTTGAACACACGCGCATGGAGCAGATGCCAAG
CACGACGCCAAGAGGACAGGGCGAAGTCATCAAGTTCGGAAAAATCAATA
AGATTAATGAGGATGGTCGAAAAGAACCAGATCTTaacaaattgaaagat
ttttcacACTCCTTCAAActtgaatcaaaaataaaaaagactgAAGTGAA
GACAGACACGACCGCTTCCACAACACATGTTGCTGTTGCAACCCCATCTT
CCACGACCAAAGAAAGTAAGGCGGTCGTCGAAGAAACAATCACGAAATCT
GTTGCAAATGTTGCTTTATCTGCACCAGTTCCTGAAACTGTTCTTTCATC
TAAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCATCACAACCACGA
CTTCTACAACAACTACTACAACCTCTGCAACACGAGTCGCGACATCTGCA
ACCGACACTAAGAACGTCTCAACGACAACCCCGACAGTTTCAACGACAAC
TACGACATCTGTTGTCTCTAGTGTTGTCAGTGCTACCGTCACAACCTCCT
CTACGACACCTTCCAAGTAAGTATACTTGTACCTAAGAGTATTTTAAGaa
ctctttctaattcgaattcCAGCTGGAGAACTAGCAAGAACGCGAACCGG
AACACTATCTTCGTTAGATGAGATATACGAAc
Run BLAST on NCBI

transcript from alignment at sc0000030:222621..239829+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003548 ID=TCONS_00003548|Name=TCONS_00003548|organism=Clytia hemisphaerica|type=transcript|length=17209bp|location=Sequence derived from alignment at sc0000030:222621..239829+ (Clytia hemisphaerica)
AAATCTGAGCTTGTAATACGAGACTATTTTATTATAGCAAGTTTAAAAAC
AGTCTGCACATGGTGCCTTATGATAATGTTATCAACGTGACTTTTATAGG
ATTGttgcaataattttttttgcaatgtaAAATGgctttcttagaaaaat
tacACACAagagtttttttgtttatttactgATTAACCACATATTTTTAT
CCTGGACACAATAAAAATATACCTGAAAATTCGATTTAATTAGTATTTTA
ATAAATGTGAACACCTGGAACGATAAATCTATATCAAATTGTTTTGATCT
ATTTTGACTTTTCTGGGATGGTGGTGGCTCTATTATTTGCATCAAGGTAT
TACTAATGGTACTTATTAaatattacacttttttatgagaacatccaaat
ctTTTTAatccttgggatgttcttaacattttgggtttcaagcctaaaat
gttcttaaaatgttcttacattCACTATTTTGCTCGTCTAATACACGTCA
AGAAGTTTTTCACCAATGAACGCTACGATGAAATGATTTTAGACATTTGA
CGTCATTTGACCCCTTCAGACACCCAAAACAGTTTCTGATTGGTACATTA
TCTTCACAGAGAGCTCATTATGTTTTACCAAGGTCATTTGACGGCAACAG
TTTCTGTTTCAAGGAGTCCATGTTGTACATGACATTCTATAGTgtaatct
ccataactcgaacacacacgtaggggttttgctttgtttttggtaggctg
gcgaatgaaaaattagcTCTGGCAATTTCTAGATTCTTGCCCGGCGAATT
CGCAATGTATTGATTAAcgtaaatatgtacttgaggcggcGAACTGAACT
TTTCGAACGGcgaattagaatttttttgatcCTTGGAACGGCAAAATTCG
CCGTTCGCCGGGCCTAAATAAGACCCCTGCACACGGGGAACACAAGTTTG
TTCGAATAGCGTTAAGTAATGTTATTGAGTAACTTATTGGGTATTGTTAA
CTAACGGCCATAAAAATGGTgcaagttaaggagacattcgagttatataG
GTTTGAGTTAAAGAGCCACTGTGCTTTATTGATTCGTTAGATCATTTTCA
GTCAATGTAGATGTCTATCCAAAATGTCAGTGGTTGTAAAGCTTCTCGTT
TTGCCTCTATCTAAAAAAGGTTCTTCAAAAGTCTCTCTTTCTatcatttt
cagcattttgtcTAAAattgaaatcctgaaaatttcacagaaTTACTAGC
TCTCGCAAATACTATAACTGCAAATCTCAGACCACTTTTCTTTGCTATTT
TAACCCCTGCTATTTTTGTTCCCTTTTTTCCAGACACATTAACAAGAAGA
AGAATCACAGTGGATTCGGTTCCGGTGGATCCAATTCTACAAACTGGCGT
GAAACAACAAAGGTCAGTGTTTTCTCTGCAAGATCCCACTTTCATTTTGT
ATCTTTGTAAGTTGTGAAAGTCAAGGCACTctatagtaagtaagtaagtc
tgtgacCCCAGtcagaggcgacccgaaggctcttcGAAggctttcgatag
ctatctacccgaaggtagggaagggcgccactctttttccttggattgct
ccacttacccttgatccttctcttaattgctgggCCTCAAGCAGACATGC
ATCAaataccattttgggaatctttggtatgacccggctggggtttgaac
ccacaaccttgcgaacagTAGCCGGgcgctctaccactgcactacggtcg
gcACTCTATGGTCGCTTTCCTGTCACTTATAAATCAATTAGCGTGTAAAC
GGAATAGCTTTAATCGACcatcaataatattttttcataatatGAACCTT
ACTCGTTTCATCATATAGTATTTTGAGCTTATTTTTCTTGCTTTCTTTCA
GAACAACAACTACAATGATTTCGCTACGAACGGTTACAAAAACCATCATT
TAACAAGCGCCTTCGTTACTCTGGTGGTGAGTTTCGTCTTTGTTTTCCAA
AGTTATGAAAACCGAATCTGCTCTTTTTATGCTAGCCTGGGGTTCACTAT
TTGATAGACTAATTaccgcgattaagtggcccggtagtatatagTAGTTC
TCAATTTTGATCTTAGGTGGACTGTTCGAACGTTGTCGACAGtttctagt
ctacttcactgaacTCAGCGTCATTAAGGAGCGATgaccaagtggtcaaa
ggcgtcagtgTCTCAAACCAGGGGTCCGCGGTTCGAAttcccgctccttc
caatgttccgttcagttcatagaaaGCCGATTaagctggccgtggacccc
atgaaaacaatcgaaagactgtctagaagtcctagattactgagCTATCC
acataaaatatcgactctatcaatgttaacaaaaaagcaaagttcagcca
gaagtagactcttcGGTTGGTGCggtattttcatttcattttctagTCCC
CACACTTCGCCCAAAGTTTTGAGTAGAAGGAGAAATGACTATTAATTCTC
ATAATCACCACTCTTCATTCTCCAGGGACTAACAGTAGAAGTACAAAAAA
CAGATGGACACATTTATGAGGGGATTTTGGAAAGTGTGTCACCCGATGTA
AGTGTTGTTAAGAAGAAAATATGTGACTTCGAAAGTCTTGTTTGCACTCG
ACTAGTCATATTACCTTATTCAGGCAGTTTTAGGATGTCTACGGCCTTGA
AAACTGTTAAAATTTGATCTAAAACGTGAATATAAAATTTTCCACGAGAA
ACTTTAGCTTTAGTATTATCAATAAGACATTAGGGATTTGCTTGACTCGC
AAACATCTTATTACCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccagcggtaact
ctggtcacgcaattttttgtcttcaacttCGATCACATAAAACAGCAGAA
AACTTTgataatcacgcatccctttgaaaaagtccaaatcacgcatcacg
gctcaaaaatctttcaaatcacgttTTATCACAAAATCGcgaagaaaaaa
attcgaaatcgCGCAATCATTCTAGAAAAAAGTCCCGATATCACGCAAGC
GGTTTGGGGGACTTTTAAGCCAATCAGAGTATTAGAAAATAGTAGAAAAT
AATGTGAAAACATAAAATCGGTGAAAACATTCCCATAGTTACCCTATCTT
TTGAGGTTCTTCTTATTGGCGTGGAAGTCTTTAGCACGAATCTCATGTTT
ATTTTGGAAGTTtgctaccttatcggggaaaacttcgtcggagaaaattt
tcgtcgtggaaaattttcgtcacttgctggtagttggtaaacgcattaag
gccgggaaaaatattcgtcgcttggtcaaaatttcgtcacttttccccga
cgaagttttccccgataaggtgtCAACTGAGGTTGAGAGTTGCTTATACC
ACTACGCTTCTTGCTTTTCCTGTTTATATCACCCCGTCTCTATGAAATAT
AGTGGAGTTTCCAGAACTTGCACACgaacggggaacacaaatttgttcga
gttaaggaattTCAAGTTATGAAGTAAGGCTTAGACCATGTtaagacgtt
acggttccgctccgttccgttccgaaatGGTTCCGGAACAAGTGTGAAcc
tcaaaaaagaagacgttacaaagcaaaacagatcgaaacggtttcgctcc
acttttttcatcggaacggaactgctccgttttcttgcttcaaaacgttc
cgaaaccaatatgaacaaattcgtgtgaacatggtcttataaggcattgt
taactgacgtttcgaattttgacgttcgaacttgtttcggaacggaacgg
aacggtaacgtctgaacatgatctgagggaccataaaacttgttcgagtt
agggACTCGTTCTAGTtacagaggttcgagttaaagagactccgctGTAA
TTCCTTTGCATCTTTCGCCGTATATTGTGATGATCAAACTAtcaacttgg
tctaatgtcgactcccctcctctaattccgacaccctttttatcagctga
aattgatagaaaggttgaaatttatttttctttgcttagtggtcagagag
taataatcctttttcaatcagtggttcaagctttcatattatttctTTCT
CCGAAGAAGGCtgtcggaattagacaagggatgtcgatattagaccaact
tgtGGTACTCTTTGGAATGAAGCCATCTGACTCTTGATATTCTGTTTCTT
TTCAAGCTTGAAGTTCATTTATGTCATGCATCTTTGAAGTCAATAAATGG
AGAATCGATAGAAAATGGGGACTCTAACCAACATAAAACCCTTATGTTCC
AATTTTGTGACATTGTCAGGTGCAATGCCAAGGTAAGATTCTCGGTGGAT
ACCATAAGCGAACAAATTTTCgcggcaaaaaaattttcgtggattttaat
ttcgcggatttttgacacattccaaaatttaaaaaaaatcacataaaatt
ggtctttttagggcaaaatagaaattaaattctgcaaaaatttctttccg
tgaaaatttcttccctttagaaaaaattcatctttttgatTGTCTTCCAA
TCATTTTTAAGTAGACACAGACGTTTCCTTAGCGTCCTGGATTTGTAAAG
TTCGTTCTAAAGTTTTTTCTATGCTatgaaaacacaagaaaaagaaatag
aaagtttcTTTTCATCGCAGTTTTTGTCTGTCTGTTCAAGGCCTATAGAA
ATGACTGTTTTTTACTCAAACTGTTTCCNCTTTTCGTCGCAGTTTTTGTC
TGTCTGTTCAAGGCCTATAAAAATTACTGTTTTACACTCaaactattttt
gtttttaggaTGTAGACTTGGATTTTGCGAAGCGTCAAAACTTGATGACA
GACACAGCCATTTCAGGGGGAACTGGTACATTTGTGGAACGGGAACTTGT
TCAATGGCAAGCCGATGAAGGGGACACGGTGGACGGCGCCATCAATGAAC
TCGATACCGTAAGTTATTTGGAACACACTGTAAAGTGTAATGGAAtacga
aatttttttaaattcaatttttggcGTAAAATACCGTAAATTTGCTATTT
TGGACGATAATTAAAACACTTCTTAACTGACCTTTGGCTGATTGGCGAAA
ATAAAtacagaaaatttcgcgattgaattaatctgaattgaaaaattcaa
tatttccTTTGATCCTTTTGGATGATTATTATTATATGGTGATTTTGGCT
ACGCTTATTTCCATAGCCCATGTTTTACGCTAAAGAAACGGATTGTTCTC
GCAAGTCTCtgtttgaattcgaaatttgtGGCGATTTTGTTTTCATCCTT
GCTTATAATGATTCATTCTTGATAatatcttataaagaaaattatttttt
ataatcGACGTGACCTTTTCAGGGAATTCAAGGTTTtagttttaatattt
ttttactgCGACATTTAATATAGCAAATTTCGTTGACTTTTACTAGATGG
GGAACACTGGTGGATGGAAATTTGAAGAGATGATCAAACAACATGAAGAT
AATTACGGCACCGAATCAACATTCGATAGCACTATGTCTAATTACATGTA
AGATTCTATTTTAGAGACCGAAACAACTGTTGATAACATTGTGTTGTATA
CAACAAAGCTAGAGTGGAATGCTGTTCGTGCAATCAATAATGAGTAATAG
actattttgaatgaaaatcaaTTGAAGAATTTGTGTACAACAGAAGTTGG
CTTGCAATAAGTTTGCCAAAACTCTTATTATTCAAAACCTGAAACAAATC
ACgctgattctttttttttatcgtTTCTCCCGTCTCTAAATAATGATCAC
CATAAAGAATGTGCCTACGTCGTGTGTACttcaaaaatagataaaatgaT
ATTCATGAAGTTAATTAAAACagaataaaagtaaataaaaagatGATTTA
AAACATGCTGTTTTGTTTAAGTTGTAGTTGTTTACATAATGAGAACCAAG
ATCTTGGTATATGAATACTAAAAGGGGTTTCGAGAAACGTTTGCATACCA
CCACCCCCATTTTAgagaagtggtattttagtacccatGTCATGTACTAA
GATTTTTAGGGACATTGAGACACAGCAGGACACAGACTGGGTCTTTTCAG
GACAAAATTTTGTCTTCTCGGGACGATTTTTCTCAAAAGAGCTGATTTTT
GCAAtttaaatattcattttttgcaaaaattgatacttttaaCCAATGCT
GCTTTATGAATTGAGCAAACTTAAAGACCTTTGACTGAATGCAAAAATAA
ATGaacttgggaaattttctttaaatgagAAAATATCAATGATAAAAATC
GCTGATTTTAGTAAcaatttactaaaaaaaatcgtaaattttaGTCTGGA
TAAtcacctttttggtattttagtaccgcATGGTACTTAAaggattttga
agttttttgggttttcatgatatgcaccactggagagtcttctgagaact
tttaaaattttccactcaatacgtcacttaaacaatagaaaaagtgacgt
attgggtggaacaaaaacggaaaagttgcataatttcgtgaagtcattgc
agtggtgcatatcatgaataccacCATGACATTAAATATCATGATGTCCT
AGATTTTAGTACTGAGAACCTCCTCGATGTTTActctaaaaaactaaaaa
actctaaaaaactTCCAGTCTCCTTTTAACCAAAAAATGAGtcataaatt
ttctttctaaaCAGGACTCCCCTTGAGAACTATGATGAAGAAACAAGGCG
AGCACTGGAAGAGAAAGCAGAACGGACTGCTCGCGAAATACAAGGCGATA
CGAAACACAAAGAATTCGAACAGGTTGGTCTCCTCTTCTAGTCTAGTCTT
CTTCTGATTTGAAAAGTTTCAGTTGAATTtttgacgtaatgttttatagg
GTGTTTTGGGTGcatccgtataaaacattacgtcatgaataaaAGCATGT
ATGGACCATATATTTGTATCAGTTATGCTCATTAGATTGTATCAGTTGTA
GATAGATAAGATGGAACTACAACCTGTTACAGTGGAGTCTTCATAATTCT
Aacccgcacggggaacacaaatttgttcgagttaaggaaattccgagtta
tggagtaaggtctatgaggtattgttaactgaaggggcgAGAATATTTGA
GATTCGAGTTAAGGTGATATAGGTTCGAGTTACAGAGGCTCGAGTTAAGA
GACTTTGCTGTAATTACGGTGATGCGATATCtaatttttgttaaatattc
tcttttcaaaacaggCAGACAGTGGTCAAGGCGAAGAAGAACTTTTCAGT
GCTGTTCATCGTACACCTTCAAACCCTTCAAGTAACAACAACTCGTACCC
AAACTCCCCTCGAAATGCCGATGGAAAACCTATGGGCGGTGGTGCGCGAG
GAGGAAAAAACGCCCAACAACCGCCTCGCTTTCAACACCGCAGAAGCCAA
GACGATGTTACTGGAGGCGCACCCCGGATTCATCATGGCGGAAGCCAAAT
GCAAAGAGTCAATGGCGGCAGCCCAAGACACCCTCGTAAGTTTAAATATT
TATTGACTTTCTTTTTCTCGTGATTATCGCCCCACCTTATTTTCTCTTAT
CATTTTGACTTTGGTACTAATCTTAATTATCCACGTAGATTTTATCCATC
AATACAAtgcacctttttgaccgtagtagcgcgggcatttttttctccgc
tttatcccactaaaaccatcccaatccttttttgacgcatttttccattg
tctattggtgcgaaaaaaggactgggacggttttattgggataaagcgga
caaaaaaatactcgcgcggcaattggtggctacggtcgaaaaggtgtata
actGGATAGTAAAAAAGGGAAAGATAACTAAAATTCTTCGACTCAAGGTG
ATTTAAATGTGAATTTATTCAACTGTTTGACAACTTGGAATGACTGGGCT
GATTTTTACAATTagttataaataaaatattccaCGGCTAAAATTGTGGA
ATGTACAAAATGAATGAATAAgtgaatgaataaatgaatgTTACATGCAT
GTTACACGATGTTACAGTTCCTGAAGTAAGCAAAATAGTCTTTTTGATAA
CTACTTTTCTATTTCCAACAATGACAAGAAAAGGAAACTGTCACGGTCAA
TCTATGTGTAATCGACCATTACTTTGGGCTCCATTTGGCGGGTTATTTTC
ACTTCCATTCTCCTGGGTATTTGCAAATCCAGCTGCCTCTAGATGCGAAC
TTTCAACTGGAGATCTTCTCCTTGTACATTGTATCTCCACATTTCCAATA
TCCTGTTGACGAACCTCTGGTAGTGTAGAGTATCTCACCAATCCACAAAT
AATAAAAGTAGACTCCTTGTCTGTCTTGATAAAGACATCGCCTCGAGAGG
CAGTAAAAGTAGTAGTCCTCTCCACTTTATCGCCCATGTTGAAATAGCTC
ATTTTCCAGTATCGATTTCTGCTTTTATAGTTAATGACGTCACACACTTG
TTGTCACACACTTGTTGTCACACACTTGTTGTCGAGCTTTTTATTCTCTC
AAAATACAGATTCGTTGTCCGTTTGAAATTTCCCTGAATGCCTTTTGTCG
TGTTGGTGTATTCTACTAAACTACTACTCTttattactttcaaataaatc
cTGCAGTTGTGACCTTGATATGATTATTATTATCAAGtctatttcgatat
ttttttataagcacattaccaattacttagttattagcttttctggagat
tggctcattcgttctttatgattttttgcacaaatgtgcctaactataaa
ccctcgaatgtaacgaagcccgatttttggaaaaacaatttggggggggg
gcaaattctagccaaaaaacggctaaaaaagggtttttttggactttgtt
gaaaactggatcattaattttccagatttttcgcATGAAAGGTGGGTGCC
ATCATCGGTATAAGATTGTCGAAGTAGATTTTCACACAAAAAATTAATCG
CTTAAAGAATGGAATCTTAATtcataagaatcactatttataagcataca
tcgatgttcttactagtcaaattactcaattttttgatgatataaatatt
ttttttttactcatgaaggcttaattttgaagaatatttgtgtttaaaca
tgaaatttttgcTACTagacgtgtttttatagaaaaagtggccaaattcg
atatttttttataagcacattaccaattacttagttattagcttttctcg
atatTGGCTCGTTCattcttaatgattttttgcacaaaagtgCCTAACTA
TAAAACCTCGAATGTGACATAGCccgattttgggaaaaaaatttgggggc
aaattccagataaaaaatgttttttttggattttgttgaAAACTGGATCA
TTAATCTTACCTGATTTTCTGcttgaaagtagggtaccaccATCGGCAAA
AGATTGttgaagcagattttcacaaaaacattttctcgcctcaataattg
aatttttttccataaaaatCACTATTTACAAGCatgcatcaatgttctta
gcNAAGAACTTTTTGGGGTCCTATCATCACTACtaacatcctgtgaaaat
ttcgGACCTCCAAGTTAtcccaatcaaaatttagcttttttgaaaatgcc
aaaaactaaacaattaaaaaacatgtccatatTGGCTCGTTCattcttaa
tgattttttgcacaaaggtgcctAACTATAAAACCTCGAATGTGACGTAG
CCCGATTTTatgggaaaaaaatttgggggcaaattccagctaaaaaatgt
tttttttggacttgttaaAGATTGTTaaagcagattttcacaaaaacatt
ttctcgcctcaataattgaatttttatccataaaaatcactatttataag
catgcatcaatgttcttagccaaattactcaatttttcgatGAGATGGAC
AGGAAAATTACCCTCCAGACAATTACCCTCCAGACAATTAAATTTATGGT
GATCAAATAACTCAATTGTAgccttaatgttcttataaaaaaaacttatc
tttggaatttcctgaatttttgaaagatattttgaagttttgtgAAGGAA
AGTTAATTTTTGGTCATACATGTTTGTTTACAGTTAGTGGTTGTATGATG
CAGACAATTTTCTCCTGTAAATGAGACCCGAAATGAgtaatttgaatgaa
aaatggctttttgaaaaatcttactATTAACAGCATCCTTTCATACACTT
TCATACAGCATTCTTAAAACTACATTTGCAACAAGACGAATAGTAAAAAG
ACTAACTGTAACGATTAAATTGTCTCGAAGGTAATtgtttgggaaatttt
ttttttttgggggggagggggtggtaATTCTCTGGGGCCAATTGTCCTAA
AATCTAATCGGGCTAGAGTTTCAATCTATTTATCAGGTTTTTTATACTGC
TTTGTTTTCTTTATATTCTATAGAATACCAACAACAGCAACACGAATATT
CGAACAATCGATCACCACAAAACCACCAATCAGCTTCACCCTACAATAGT
CATCACCATAGTAACCATCATACTCACCATAGCAACCATAATGACCCTCA
TCACAAACAAGTACCAAGCAAAAACCAACCCACCAGTGGAGCACCACATA
ATCACGCACAAAGCGTAGTGGTCGACCCCAACATCCCTCCACCGTTGAAG
TCCTATTCTTCAGTAGCAGCGCGTAATAAACCAAGCGGTGGAATGCCCCC
TCTACCAGGACAACAGCCTCAAGGAGTACAAATCACCAATAATATTGGAC
AACAGCCGCCTGTCAACAATGGGCGGCCGCCTATGAAAGCAGGTCCTCCC
GCCCAAGCAGTGGAACCTCAAGATATAAGTAAAGCTCTACCCGTCAAACA
AGAACAATTGCATAATGCAAAACAACAATATATCGCACAAGCTAAACAGG
CTGTTGCTAAAAGTAACAGTACTCCTCCCGTTAATAAGCCACCTGTTAAC
CAAATGCCTATGTCAACTGGTACCCATCAAGACGCCCCTAAGGCGCCCAC
ACAAGGCCCTCCCGGCTTGTCGTTAGCTGCTGGATCCGCCCCGACGCCTA
CCTCAAACGCCCCGAAAGCTTCGTATAGTAGTCGACTAAGTACGACGAAC
AAGACGGCGGCGGTTGAACACACGCGCATGGAGCAGATGCCAAGCACGAC
GCCAAGAGGACAGGGCGAAGTCATCAAGTTCGGAAAAATCAATAAGATTA
ATGAGGATGGTATGGCTTTTTTTTGTCCATTGCTTTTTAACAACTCTTTT
TGTAAATCAGAGCAGGTCCCATGCAGTACTATTACAGGTTTAGCGTAAAG
TTTTCCCAGAAATAAACGGATTTATGCCAAGAAATGATTTCAAAAGAGAA
AGAATTCTCgtaaaaaacgctaatttcaTACCTTCGCACCTCGAAGATAA
GTTTTGTCAGAGTACTGTGTTAACAAGGATCGCAAGATTGACAGTTTAAA
ATGGTGCCAGATCATTTTTGTCCATAATCGAAGATATAGTCGATATTTTA
CAGCAATATATGAACTCTAACGCGGCGTTGGAAGTGGTATAGGTTCGTGG
GGTTGGCGCTTTTAGACGTCTCAGCCATCGTTCCAgccattgggccattc
cattttatctcCATACAGGAGGGGGGGGGGGACAAACATTTCCAGGGGGT
AACCTGAGAAGAATTTCCAGGGGGGGTCTAAAGGAGTGTTTTTTTTTCCA
GGGGGTAAATATAGTTATTCTAAAATTTGGACAAGACAAGTTTTATTTCG
TCCACTGTCACTTTAAAGTATAAAATAAAACTTTTCCGAGGGTTATTTTG
CAAATTTTGCTATTTTCCAGCGGGTATCCTCACATTTCCAAGAATTTATT
CTTGACTTTAAAAGGTTCGTCCCCCCCCCCCCCCTACCctgtatcaattt
ttaaatggaacagcccattggtgtcgttgattttttctgaagatGATCCT
TCTTTTCTTTACTTGCAGGTCGAAAAGAACCAGATCTTaacaaattgaaa
gatttttcacACTCCTTCAAAGTAAGTAATGCATGAATGCTTctgcacgc
ttttttttataagaatatgttctataagaatatcagggtgctAAATTgac
caaatcgtaagaataccctgagaataccctctagggtgaataTCACAGag
tttgataagaatacaatcattttgtatttggttgaCAGAAGCTGCTTCTt
ttgttagacttgaatttgaactttgaggcagaaatgtaaGTTTTGCTcca
aatgttcattcaaaagccccgaaactctcaaattgatcatttctcatgtt
tgtaaaaagtcaagtctaaaaaagtaagaatacttgaccctcattcaaag
tacactattcttattaaaagaaagcgtgtattttaccgatggtttgtttt
tttgggaacAGTTTAGTAGAGTGTCCACTTTTTATGTTCTTTTTGCCATA
TTGCAAATAAAACATTGGTTTTTAATTACAGGCATATGtcgatttatttt
catttatttttattggcccagcgctaagcgagtgggcctttcatttgcaa
cgttCTGTTCGTACgtgtgtctgtccgtccgttttggtagaaacggcgct
taaaaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNcccccagctattaggtacccgaggaGAGTATTCAACCGGA
TGAGCCTTATTCGCCTGTGTAGTCCCGGTTGGTAGGggaccattcaataa
aatttcaagcgtataaccaatgagaagtaccgcgtttattttgaaaaaat
ttttcctgtcttcactttgatccatgtcaacggggtcatacatttgctgt
tttgtaCGCTCgatttcaacacgttacttttcgctgggccttcacgccca
acgggcttcttgtttttatttatttgtttattagatttatttttttgcgA
TAAACAAATTCGCGACGAACTTATTTTTTCCGGTCTTAGGTTAAGCGAAT
AATGACTGTATCTAGTGGTACggatttgctaccacctcaagcaaagccaa
aaaatggaGCCTGCCAAATTACatcgggccacttatcagcgccatccagt
ctatcaaaaagctttaattgACCCCCGGGCTATGATTTCCCAGCCTTTct
tcaaaaaaagtaaaaaaagttgGAAAACTTTCGTTCATGCCAAGGAGATC
TGGAGGTATCCACGACAGTTAGTCAGAAAATTGACTTGTCAAAGCTTGGA
TCAAGTCGGTTCCAACAAGTTACCATAAAAGTTACCCTCAGAAAAACACA
CAGTTTCTATTGCATCTTTAGCTACCACCCACCCCTTCATTAGTCTGAAT
ATTATTAAAAAGAGAGTTTTTAGAAGCTCCCAAAACTATAcggcaaaaat
tcaaaataaatttcgaatatTCTAATACTTCgacataccttatcggccct
tattGGTTTTATTTTTGCGTCGCTGaagtaataagggccggcgcaAGGGG
CTGGTTTTAAATTAAAGACGACCTAAAAAGGAcagaaattgagttttgat
gtaataagggccggcgttgaAGGGgtcggcgttaaattagggccagCGTA
AGAAGGGGTCGACGAGGTAGCTGCTTTCAACCAATAAATTGCAGGTCTTC
GGTATCGGGGGAATTGATATCTcacaaaattttcttataattttagcttg
aatcaaaaataaaaaagactgAAGTGAAGACAGACACGACCGCTTCCACA
ACACATGTTGCTGTTGCAACCCCATCTTCCACGACCAAAGAAAGTAAGGC
GGTCGTCGAAGAAACAATCACGAAATCTGTTGCAAATGTTGCTTTATCTG
CACCAGGTATATAGTCTCGACGCCCATTGATGTCATTTCTACAGCGGGGT
GTATTTTTTTAAGTCTTTTCAATAATTGATATTGAACTATTTCATTCGGT
ACCAATGACATAATTTGTATCAAATAATTCATATTTTGTATAGAATTCTG
AGTTTGATACGGACTAGTACAATAGTCGTCGAGAAAAACTCATTTTAAGT
AAAATACTCAAAACAAACTCAAAAGTAATGATGGTGCATGGTCCGTTTTC
CTCAAAAAgtgttgttttaaaaatttcaaccttttttttctGTCTGTATT
TACAGTTCCTGAAACTGTTCTTTCATCTAAACCCAACACCAAAGACGTCT
CCGCAAGACCTTCCATCACAACCACGACTTCTACAACAACTACTACAACC
TCTGCAACACGAGTCGCGACATCTGCAACCGACACTAAGAACGTCTCAAC
GACAACCCCGACAGTTTCAACGACAACTACGACATCTGTTGTCTCTAGTG
TTGTCAGTGCTACCGTCACAACCTCCTCTACGACACCTTCCAAGTAAGTA
TACTTGTACCTAAGAGTATTTTAAGaactctttctaattcgaattcCAGC
TGGAGAACTAGCAAGAACGCGAACCGGAACACTATCTTCGTTAGATGAGA
TATACGAAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001981XLOC_001981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003548-exon-sc0000030-1491911889:222621..222966TCONS_00003548-exon-sc0000030-1491911889:222621..222966Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:222621..222966TCONS_00003548-exon-sc0000030-1510915933:222621..222966Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:222621..222966TCONS_00003548-exon-sc0000030-1575043694:222621..222966Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:223954..224032TCONS_00003548-exon-sc0000030-1491911889:223954..224032Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:223954..224032TCONS_00003548-exon-sc0000030-1510915933:223954..224032Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:223954..224032TCONS_00003548-exon-sc0000030-1575043694:223954..224032Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:224522..224596TCONS_00003548-exon-sc0000030-1491911889:224522..224596Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:224522..224596TCONS_00003548-exon-sc0000030-1510915933:224522..224596Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:224522..224596TCONS_00003548-exon-sc0000030-1575043694:224522..224596Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:225146..225217TCONS_00003548-exon-sc0000030-1491911889:225146..225217Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:225146..225217TCONS_00003548-exon-sc0000030-1510915933:225146..225217Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:225146..225217TCONS_00003548-exon-sc0000030-1575043694:225146..225217Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:227077..227202TCONS_00003548-exon-sc0000030-1491911889:227077..227202Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:227077..227202TCONS_00003548-exon-sc0000030-1510915933:227077..227202Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:227077..227202TCONS_00003548-exon-sc0000030-1575043694:227077..227202Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:227679..227828TCONS_00003548-exon-sc0000030-1491911889:227679..227828Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:227679..227828TCONS_00003548-exon-sc0000030-1510915933:227679..227828Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:227679..227828TCONS_00003548-exon-sc0000030-1575043694:227679..227828Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:228317..228417TCONS_00003548-exon-sc0000030-1491911889:228317..228417Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:228317..228417TCONS_00003548-exon-sc0000030-1510915933:228317..228417Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:228317..228417TCONS_00003548-exon-sc0000030-1575043694:228317..228417Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:229585..229693TCONS_00003548-exon-sc0000030-1491911889:229585..229693Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:229585..229693TCONS_00003548-exon-sc0000030-1510915933:229585..229693Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:229585..229693TCONS_00003548-exon-sc0000030-1575043694:229585..229693Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:230135..230405TCONS_00003548-exon-sc0000030-1491911889:230135..230405Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:230135..230405TCONS_00003548-exon-sc0000030-1510915933:230135..230405Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:230135..230405TCONS_00003548-exon-sc0000030-1575043694:230135..230405Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:233344..234129TCONS_00003548-exon-sc0000030-1491911889:233344..234129Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:233344..234129TCONS_00003548-exon-sc0000030-1510915933:233344..234129Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:233344..234129TCONS_00003548-exon-sc0000030-1575043694:233344..234129Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:234889..234941TCONS_00003548-exon-sc0000030-1491911889:234889..234941Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:234889..234941TCONS_00003548-exon-sc0000030-1510915933:234889..234941Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:234889..234941TCONS_00003548-exon-sc0000030-1575043694:234889..234941Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:239017..239176TCONS_00003548-exon-sc0000030-1491911889:239017..239176Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:239017..239176TCONS_00003548-exon-sc0000030-1510915933:239017..239176Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:239017..239176TCONS_00003548-exon-sc0000030-1575043694:239017..239176Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1491911889:239476..239829TCONS_00003548-exon-sc0000030-1491911889:239476..239829Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1510915933:239476..239829TCONS_00003548-exon-sc0000030-1510915933:239476..239829Clytia hemisphaericaexon
TCONS_00003548-exon-sc0000030-1575043694:239476..239829TCONS_00003548-exon-sc0000030-1575043694:239476..239829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:222621..239829 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.355496	0	0	0	0	0	1.2475	0.788784	0.42562	0.173178	0	0	0.115393	0.284199	0.174219	0.0964637	3.72433	2.91603	0	0	3.30508	1.964	1.25094	2.35184	2.95715	1.08285	2.08461	1.47217	0.746714	0.21681
Blast
[Close]
BLAST of TCONS_00003548 vs. Swiss-Prot (Human)
Match: ATX2 (Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 6.607e-25
Identity = 74/222 (33.33%), Postives = 115/222 (51.80%), Query Frame = 3 
Query:  459 YKNHHLTSAFVTLVGLTVEVQKTDGHIYEGILESVSPDLEVHLCHASLKSINGESIENGDSNQHKTLMFQFCDIVRCNAKDVDLDFAKRQNLMTDTAISGGT-GTFVERELVQWQADEGDTVDGAINELDTMGN--TGGWKFEEMIKQHEDNYGTESTFDSTMSNYMTPLENYDEETRRALEEKAERTAREIQGDTKHK---EFEQADSGQGEEELFSAVHR 1106
            Y N  +     ++VG   EVQ  +G IYEG+ ++ SP  ++ L  A  KS    S    +    ++++F+  D V    KD+D  +AKR +  TD+AIS    G   E++L  W A E      A  EL+ + N  + GW   +M + +E+NYG  ST+DS++S+Y  PLE  + E     E +A + A EI+   ++K     E  D  + EEE ++AV R
Sbjct:  263 YANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIM-ESILFKCSDFVVVQFKDMDSSYAKR-DAFTDSAISAKVNGEHKEKDLEPWDAGELT----ANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDD--RSEEEKYTAVQR 476
The following BLAST results are available for this feature:
BLAST of TCONS_00003548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATX26.607e-2533.33Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2[more]
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