TCONS_00003543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003543
Unique NameTCONS_00003543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003543 ID=TCONS_00003543|Name=TCONS_00003543|organism=Clytia hemisphaerica|type=transcript|length=1434bp
ATGAACCATCAGTGACTCCATACTTCTGACAAACAAACACAGAAccactg
aaaaataaaaagaagaaccACAACTTAACAGAGAAGAATTCAAGATGTCT
CAATATAACAACTATGGCCAAGGGGGTGGTGGTCAACAAGGAGGCTACGG
TGGAGGTCAACAACAAAGTTATGGTAACTATGATCAATCCTCAGGTGGTG
GGTACGGAGCAAGTGGTGGTTATAATCAGGGTTATCAGCAACAGTCAGGT
GGTGGGTCATATGGTGGATCTAGTGGTGGCTATTCACAAGGTGGCAGTGG
TGGTGGATATGGTGGTGGCAATTCCTATGGTGGAAACAGCCGTGGAGGAG
GATATGGGGGTGGCAGAGATGGTGGACGTGATGGCGGAAGGAAACAACAA
ATTTAAAGATGGTATGATTATTCAGGAAGATACTGTCTTTGTTGCTGGTT
TACCTCCAAGTGCCAGTACAACTGAAATTGCTGAATTCTTCGGGAAAATT
GGAATCATCAAGacGGACAGGCGTACTCGTGAACCAAAAATTTGGATGTA
CAAAAACCATGATGGAACACCAAAGGGTGAATGTACTATAACATACGATG
ATTGTGATGCAAGTCAGGCTGCTGTCAGTTGGTTCAATGGAAAAGAATAT
GATAGTTCTCATGTATTGAAAGTATCCATCGCCCAGCGGAAAGCACCCGA
GGGTGGATTTCAAAAACGTGGTGGAGGACGTGGTGGTGGTAGAGGCAGAG
GCGGTGGTTTTGGTGGCCGAGGAGGCGGTGGTCGCGGAGGTGGGCGTGGA
GGCGGTGGTGACCGACCTAATGCAAGAGATGGGGACTGGAACTGTCCAAG
CTGTAATAACTTGAATTTCGCAAGACGAAGTGAATGTAATAGATGTCAAA
CACCAAGAGCTGATGGTGGTGGTGGCGGCGGTGGTTCCTCTTATGGCGGA
GGACGAGGTGGTGATCGCGGAGGCGGTCGTGACAGAGATCGTGGTGATCG
TGATCGTTCTGACAGAAGATCGTCGAGACCTTATTGAGCACCATGTTTCA
TTCCACTACAACCAAAAATGTGTCGAACCTCGAGCTACTTCAACATAAAA
CGAAAACGTGAAACTTTAAAACACGTGACGATGATTAATCGATTCACATG
TGCGTtaacaatttcaatttgaaagtGTTGTCAATCCTTCAACCAGAATC
TCGAGCTCAAAAGACGGAGTTTTAACCCAAAAATGATTGAATTATACCGG
ACATTGTATATAACTAACGGGCATCTGCAGATCACCCGGAATATTCCGTC
CACGCTTATATGATTCTTTTTTTGTATCATAAATTTTAAACTggaaataa
aactttttcaaacagaaTTGACTATCTCTCTGTTATTTTTATGTTAATTT
TGAACGAAGAAGAACTCTATTGTTTAAATTGCAA
Run BLAST on NCBI

transcript from alignment at sc0000030:182549..195988+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003543 ID=TCONS_00003543|Name=TCONS_00003543|organism=Clytia hemisphaerica|type=transcript|length=13440bp|location=Sequence derived from alignment at sc0000030:182549..195988+ (Clytia hemisphaerica)
ATGAACCATCAGTGACTCCATACTTCTGACAAACAAACACAGAAccactg
aaaaataaaaagaagaaccACAACTTAACAGAGAAGAATTCAAGATGTCT
CAATGTAAGATTTGTTAAGATTTCTTCAATATCTGATATTTATTTTTAAG
GGATTTAAAGTGAAGAAATAAGGACGTTAGGAGCAAAACTTCTGCCTTTT
CCAAAATCTaccattgattttttttcatgcaGGTTTATCCTCTCTTGTCA
GGCATTTCGGGTTTCTTTGATTTTCGTTAAGAATTCGAGAACtgtttgat
tgaaaaaatttgtgGACTgccatttcaaataaaaatgaaagattgaCAGA
GTCAGTCTGGCCTTATTTTTTAGCAATAGGAAATAGTAAAATTTTATATA
TCTATCTAAATCAAGTAGCTGAAAGACTTGGCCTACACTTTCTGCATGAA
AAAATATTGTGTCTGGACTTAaggaaaatttagagaaaaaaatcgaGTAT
TAATGAATAGTATTAATGAAGATACAggattgggctattccaaaaaaaat
ttatacaggggtattgacaaactttttcaactaacccccttggaaatttt
gaataacaagCTATCCCCTGGAAATCAAGGGGTAGACCCCTATAGAaagt
aaaattttgtgaaaaaggggcTGGAAAACAATTATTGATGTCAATTTATG
AAgagagaaccccctggaaaccaataataacccccttggaaaatgtgaaa
aaggaacaaataccccctggaaaatcaaggctcagacccccctggaaaag
ttcaatacccctgtatggtttaaaagTGGAATAGCCCATTCTGGCACAGA
ATTCGGTGAAACTAATTTTTTGTTGTTACTAcggttgacgctctctaatt
cgacgttctactattcgatacgctcccttattcgatacaTTTTAAAGTCC
CAGTCATCAAGAATTTCTCATAAAcaacgctccattattcgataagctcc
cttattcgatgaaaattcaattcccAATGataatcgaattagagagcgtc
aactgtattaacATTGTGATAATcgttattcattttttttttattatttc
ttttttctttagttctgtaacaatttttcagtttcttctattttccccat
tgtattagagaaatctctTTTTTTGTAAGGGTTATCCTGCTGCATtacag
cgaaaatatattcaattcaatacaCCTTATCAGAATTTCCACCTCCTCGC
GTTGTTGCTACGCGACactttttgggaggtaaacaaagcgcgatattgcg
gttttcaggcaaaaagccttacaaaacacccaaaatattgatgccaaaag
agcctccaaatcaactgaaaaaccaccgaagttgttgttcttctctttct
tatagcttctgctagcattttgaaagctttgttttatttgttttttttca
aattcataatcAGTGATTCCAACTTTGATTAGGAGTGTCGGAATTACATG
TGGAATGTCGGAATTTTAGCTGAGGGATGTCTAGTTTGGACCAACTTACT
ACAATGGgctattcaaaaaaaattatacaggggTGTGTATTGGCAAACTC
TTTTCACCACCCCCACTggaaatttaaagtaaaaaattatCCTCTGGAAA
TCTGAACCcccttgaatttgaaaatttaaaagggTCTGGAAACAACTATT
GATGTCGTTTTATGAGGAGAGAGCCCTCTGAAAACATTAAGAAACTTCAA
TGATCcctttgaaaatctgaaaaatgaacaaaatccCTCTGGAAAATCAT
TACACAATCACACCCCTTGGAAAAGTTCATCGATACCCCTTTATGgttaa
aaaatggaatagcccaaacAAAGATTAATACTGTGGAAGCGCCTTATCGT
TTACTTTTCATGCCAGCAAAAAATGTGCAACAAACTTCTAAATGTTTGAA
TGAAAAGTTAGACAGgctctttttaatgaaattataaAGGGAtactcaaa
aataaattttaggtCAGGAAAACCTTGATtgacgttttaaatttttcctg
aaatcaatcaattataTTTCTGTAATATATAGGGGCAGAAAAAACTAGCC
ATCTGCAAAAATTCTAGGGCTGTGTACGGGCAGTCAAACAATTAGAACCC
TGAGACATAAACATTGGGTTGTttgtttgggttttcaaaacacagggttc
gaattatagattTTAATAGCTTCGCTAAAAAATTGTAGTGCCGCAgtcta
aaattttttcaatgtttgcgatgttgtttggaagaaaatgcgAAATTATC
TTCAATGcatttctctaagaaagtgaaGTAAGAAGTAGACAAAGCAAAGC
ATAGAGAGTTgatagataaagcaatagataaacgaatgaataaagttgta
aagtagcgagttgataaagcaacaGATAAACAATTGAACAAAGTTGTGAG
GTAgcaagtttataaagcaatagtcAAACAAATGAATAAGGTTGTGAAGT
AGCGAAAAAGCAACATGGCCAGTTAAATGAATGAAGAAAGTTGCGAAATA
GGGAGTTGATAAAGTAATAGTCAAACGAATAAAAAAATGATGAGGTAGCG
TATTGATAACTAAAACAacagataaacgagtgaattaAGTTGCAAAGTAG
CAATGATAAAAAGTAATAGCTAAACCAATAAGAAGAAAGTAACAAAGTAG
CGAGTATATAAAGCAATGAATGAAGTagcaaaaagtgttttcatgTAATT
TTTAACTTCGTATTTTTGTGTTGGGAAATCTTTTTGGGtcgctaaatcta
aaattcactGTAACATTTGGTATGGAATTACTTCTCTTAGGTTTATCCTT
TTATAACAAACTTTATTTTCActtgtttctaaaaaaatgtaACCACCTTT
AACCGtcacacattttcaaaaacttccaTGAGATAATCCAATAAATCTAT
GTTTTAGATAACAACTATGGCCAAGGGGGTGGTGGTCAACAAGGAGGCTA
CGGTGGAGGTCAACAACAAAGTTATGGTAACTATGATCAATCCTCAGGTG
GTGGGTACGGAGCAAGTGGTGGTTATAATCAGGTATACTTTTCTGCAATT
CTAATGTTCCTTATTGTATTGCCAAACGATTTGATATATTCTATGATTTT
TAAGACCTGGAAAAAAGTTACAGTCCAAATACTAGAAAGGCAGGACATGC
TCTATTTTTGTCATACTCTTTTTAGGGTTATCAGCAACAGTCAGGTGGTG
GGTCATATGGTGGATCTAGTGGTGGCTATTCACAAGGTGGCAGTGGTGGT
GGATATGGTGGTGGCAATTCCTATGGTGGAAACAGCCGTGGAGGAGGATA
TGGGGGTGGCAGAGATGGTGGACGTGATGGCGGAAGGTGAATAAGTTTTT
CATATGGCTTTCAAGTTAATTGAATAGAATTAGAAACTAGCAAGCCAGAT
CCACCAAGGTGTGAGTGGCCAATGTGGGGTTTTTCCTTTGTGCCCCTCTA
GTCTATAATTAGTATAAATTCTAGTTTGTACCTGATTGGTCTTGAAGTCA
cattttcttaattttgttGTCTGCTAAAAGTATGCGATTTCTGATGTGTG
ATCAACAAACTTtctactctaggggctgagttaggtcccgtatgcgcatt
ggcgtatagtcattttttcttttgatcatgaaagtatagtccttgaagag
tcagaaaacgtgtgtggcgttatttggatcaggcacaaatttccataatg
gcggattttagattttcaaccctttttagctctcttgcttgaaaaaactt
taaacatcgacatattatataccaatcgatcacaaattttatgctgatta
aaaaaaatgtcagaaccatggtctgaaaatttcgttatctggagatatga
agcactttcgattttgattttttgaaatgactacttttggttctaaattt
gcgtggctgtaacatttgattggcttacttgatttacttgaaattttcgg
agggtcttgcctaccgttcaaataataaaattcaggaaaatttatttttc
tacatgaatttcgaaatccataatggcggattcaaaactttctttcgtca
catgggctcttaggctctgctagctcTCTTAGCTCTTTGaacttaaaacc
ctgcatattatatactaatcaattagaaattttatgctgattaagaaaaa
ggtcacaaccatggtctgaaaattttgttatcatgagatacgaagtactt
aaagtacttcatagctcgagagagcaaaataaaaaaaaaaaatttcaagc
aagagggctgaaaaagggttgaaaatctaaaatccgccattgtggaaatt
tgtgcctgatccaaataacgccacacacattttctgactcttcaaggact
atactttcatgatcaaaagaaaaaaaacttactttatGGGGTGTAATTGA
TCGCACTCCTCAGccattttaggtgtgtgtggaggttTGCACGTTTTGTA
AGATCGTCAAGGCCCAACTACATTTTCCtttgtgtttcactaaattcaat
ttgaataattttgtcaCAGATattgattttgtgtttttggGCAGATCATC
AGTAAATTATATGGGTTTAGAGGTTGTTAACATCAAGTAATAAGAACATT
TTCTAGGTGATATGATTTTAAAGTTTATTAACACATTGAATTGACCTTGT
AATCTAGAAAGGCATGGTAGCATCTACTAAAAGCTAGGGAAGGTGTTTGT
TCAgtgtgttttcaaaaaaaatggaaTATTTCAGGTGGGGGCAGTATTCA
TTGAGCAGACAAGTGTGCTTGCTGAATATATTTCTCAACCATTAAACCCC
TGAACTCACTGTCACCCATTCAGATGTGAGGCCAAGCAATTTTTGATATA
AAAGGGAAAAACAATTCGTTTTAAACTGCACAATAGtttgaataatgaaa
ataatgtGAACAATGAAGCACCCTCTGCCAACATTCAGCAGTTTTTCTTT
GACCTCTTATTTGTACTTAAAAGTTATATAGCACGTATGTTTCTGCGAGG
AACATTATCTTTTTTTTATGTAACTTGTAAAAAGTTCTTCCATCCCGTTC
AGGTCTCCTCCTtgaggcttggggacacgagaagtttttttcgcgttggt
gcaatgcaaagtgcgtgtctcatggtttcttttatTGTCCCAgagacaaa
agtgagagaagcacaaatgttataatattaaaagaaaaatgggatGGAGA
CACGAAagtgtttcaggttggtgggatggagcatgttgcattgcaccaac
gcaaaaaaaacttctcgtgtccccttTTTGCCTTTagcaaagtaaataaa
taagatactatttttcttttatctcCTAATTCAACAAAAGTTTGCAAGAT
TCTTTGCTATTTGTTGTGTTAGGTCTCTTTCCTGTCTGAGCAGGTCTGAg
acaaaaaatttgctttgaccactggcAAAACACATCGAGGTTTATTATTA
TGGTTACCCTCTCGTCACAtgaatgatttaaaaaagaaatttagatCTTG
ATCGGAGTGAACGGCACTAAAGAAGGGGTGTTCTTTTATAATGGCTGTTC
ACCATGTTTTATAAAAAGACTTCACAATTCAGGGTGTATATGCGGGACTT
AACTGGAAAATCTTTGAATTTACTATAAACACCAACTATGATATAAaaca
attattattattattattattaaaagaATTAAAGATACAATGACATATCA
ATCTGGCATAATTGCTTTCCTTGTAGCCTGGATCTACTTcataaagcttt
ttgatagactggatagCGCAATTAAGTAGCCATGGGTATTATGGTTTTGT
TTAGGCGGACAGATTTTAGTTgcttttggaaggtaaaaaaggatttagca
atgtttttattttcagatggAGTTTTGGGAACCTCTCGTTTATGTTTGTT
TTCCATTCTtagttctatttttttttaatcaaggtagttttttattattt
agaatttttagtGTCTTTCTTTCACAATGGTGACCTCGTCAtttgctcct
agtctacttcactggactcagcatcataaaaattatcaaaaggcAAAGTT
CAGCTAGAAGTGACTCTAGTCTTCTTTCCTTGTAGCCTAAAGACAGCCTA
AAAATTACAATTTGGGTATCTTTGAGGGCTTGGCTACTGCTACTAAAGGA
GGGTTTAGCTGCCTTTCAAATTGTGCAGTTACTGAAGCTTGTATAACTTG
TGTATTATTTCGCTCTTACCTCATATTAGTGGTTACGGTGATCGTGGAGG
TTCTAAACCTGATGGCAATTATAATTACGGGGGTAAGTTTATGGCATGCA
ATACGTCATCATTCGTTCATGTAAAACATATCGGTAAAATCGTAACAAGG
TGTCGTAACAAAAAGTGTAAAAGGTAACATGTAACACAAAGGTATTTATC
TATGAATGGTATGTTTTATTTGTTTCACGTTCATAAAGTGTTAACTTCAA
TTGGGTGATTAATCTAGTACAAATAGATATTATGTTCACTATCACTTTAT
CATTGACAGGCTGGGTTCTAGCTTGCAACTACTAGCTTTCCCTTATCAAC
TTTGGTTGTCTCGTTTTTCTGGTTAAACTTAATACTTACTTGCCTTTaac
taaaattttactttaaaattaaaatgtaCAGCTTTGTGTACAGCTTCTTG
ATAGTGCCAAAGTGTGGGATCAAAGCCTAGTAATGTAATGGGTATAGTAA
ATTGAGCATTAGACTTTTTGGTGTTTACTGTGTTAATCGCAATATCTATC
CGCAATCATCTATTCACTACAAAAAATTAAACTGTCAGCCTGgtatcatt
ttcatttatatCTCACCAAGATTAAAAGATACTTTCATCAGAAAAGTTCT
ATAAGATATTAGTGAAATGGTTCATTTTCCGTCCaagaagaaaaactttg
aaaaaactgCTTTAACCAATGTCATTAACAAGAAGTACCATAAATGTCCT
AATCTTTTCAAGTCTATCTGGGTAATCATTAACAACTTTCTGTGTGCTGG
ATAGTAATTAAAAATGGAAACGTAAACGTAAACCTTATCATGCGCAAATA
GTTCCCTACAAAATTTTAACCAGGGCGCAAATAGCTCCCTAAGAAGATTC
TAACCAGGGTTATAAAATTATTAAAGCCTTTATTCGCAAGATGATGCTGA
CCGGTTtaatgaacaaaaataaaaggtgactgattttgttaaaattacAA
GACAGCATTGATAGAAAGATTAAAAAAGGTTTCTaataaaaaacaggttt
ttttcgAAGAAGCtacaagaaactaaaataaattgtcacCTTCAATAGAA
TTTTGTGTTGCCTTTTTTAATTGGCACTGGAGATATCAGGTTTATAAATA
CCAATGAAAATGGTTGATAAGAAGTCTATTTTATTGGTTTCAAGTTGCAT
GtataaagaattttttatttctttatttcttaatTAGTCTTTTGAGACAA
AATGATCCTAAGTATTTGAGACTAATTATTAACAGCCTTAATGTTTTTCT
CTTGCTAAGCAAAATGTAAAATTCCATGAAGCTTTCAGAATACTACACAT
TCTTTTTAAGTAACCCAAATTTTTGGGTCAGTACTGGGGTTGCTAAGCAT
TcttgctcattttctgaaaaatttgcttttgcCGCCTTTGATATTATACC
TACTAGATGTCGTGCTTAAAGCTCTTCCAAGAAAAGttaatatcgcaaaa
aatattgttgctgcTGTTGTTTtgcgaagcttcttattggtcaagcgctg
aaactATTGTAATGCCACTTGGcctaggtaggatttcttacctaacctcg
gcactcttttcagccaaagcacaacatctagccctttgggcttaaTAAAT
CTATGATTagaccatatttatgcttattgggtaAAGGGCTATCGTTGGCC
CTgattagattatctaaaaaagtTTATGCTTTACAAGATAGTTAaaaaaa
atgactaatttcaGGACTCGAGCCTTAGCAACCTGTGTAATTCAGTAGTT
CAACAGGTGTTTTTCTCTTTGTAGGAAACAACAAATTTAAAGATGGTATG
ATTATTCAGGAAGATACTGTCTTTGTTGCTGGTTTACCTCCAAGTGCCAG
TACAACTGAAATTGCTGAATTCTTCGGGAAAATTGGAATCATCAAGGTGA
GAGATACATTTTATAAACAGCAAGATCCTGAAGATATTTGATGACCCAGA
GACGAAGCAATAGTTGAATGTTTGTTTTGCAGTGTGTAAGAGGTGATGTT
TCTTCTAGAAAACACTGCATTTTCAAAACAGACATACAGCGCCAAGGATA
GCAACATTTGCTAATGAGAGACATGATACTGGGCTGGGGAGGAGTTTTAT
CTCTACATTGTAAAAAGACCGAGATGTGCCACCCTTTTCAAAATACTAAG
TTATTAATTCCCGTCTTTAAAGCAATTCAAATGATTTCAAGCTGTGTAAC
CTTAACTAATGCGACGATGCCTTGGATATTTTAATGATGGCATTTGgcat
ttgattttctttctttagacGGACAGGCGTACTCGTGAACCAAAAATTTG
GATGTACAAAAACCATGATGGAACACCAAAGGTGCGTAGATGGCCTCTGA
CAGTTTGCATGATGACATGATAAAGGGCTAATTTACTGCATGATGGCgtg
atttcaaatttatttcCACGTAATCACAGTgggtaccccctccccctgga
TTTTGGAGGGTTgagaattttcagattttaaaaataggtggggggGTTAC
GTTGATGTGAAATTTTAGGTGCGTGTAATCCTTGTCCTTGGGGTGAAAAC
TTTAAGGCGGGGGGGGGGttaagttttctttttattgaagaatttttttg
agtttgCACTTTTCTGTCTTCTTCTTtacaaaaaagtgaaataaggttaa
aagttattttttctcTATTCTCTTTCTGTCCAGTTTGTAATCTTAAAGTT
CTTCCTTTCACTGATTATAAAACATTAAGTACAATAATTCTAATATCGTT
ATATGGTCTTTCTCTTTTTAGGGTGAATGTACTATAACATACGATGATTG
TGATGCAAGTCAGGCTGCTGTCAGTTGGTTCAATGGAAAAGAATATGATA
GTTCTCATGTATTGAAAGTATCCATCGCCCAGCGGAAAGCACCCGAGGGT
GGATTTCAAAAACGTGGTGGAGGACGTGGTGGTGGTAGAGGCAGAGGCGG
TGGTAAGTTGAACTCtccaattttacaattttttaatataataGAAGATT
TATTAACTTTACCATACATAATtagatttgagaaaatttctAAAACTCTT
CCTGACGTCAAGCACTGTCAGCAATTTGTCTGAGTCttaaatttcaattt
acaatTCACACGCTAATAATTTCATCATCTCCTATCTCTTACAGGTTTTG
GTGGCCGAGGAGGCGGTGGTCGCGGAGGTGGGCGTGGAGGCGGTGGTGAC
CGACGTAAGTGGtcatttctttgatttttcatagcgtcagccccccttGC
TAATTGGGAGTTAAGCCCTCCAAAAAATAGTTGGGCTAaagatgtttcaa
atatttggggggacctaatGTGCTTTGGGGGAGCTGAAATCTCATTAGCA
TGGGGGCTGAATACTTCATCTTAatggttggcttcaattactcaaattaa
agCTCGTGAAGcttaacatttttgtttttatattaaaTTAAGAAAATGCC
TTATCTTAAACCTTCGAACTGCAACACAATTTGCATTAAATAACCCtttt
tttgtggaaaaaatGGTTGAGGGTCGAAAGCCTTTGGGAAGGGGGGCTAC
CAAAAATGTCATgaatctttggggggacttaaaactcagggaggacctaa
tttttgcctgggacctaaacccaggctgacacTATGTTATTGGTTTTCTG
TGTTTATGTATATGTTCCTTACTCCCTTTTAGAGAATTGGTCTTTCAGTA
CCAATGTATTAAAATTTTCTGTGACATTTTGGCGCAGGGACTACCCAATT
TTGTTTGGTTTCTCAGGACAAATTTTGTCTTCTGAGGaccatttttatca
aaagtgcTGATATTTTCCAACATAATattcatttttgcaaaaattgatAC
TTTCAAACAATTTCTACAAATCGAGCAAATATTAAAGACATTTGACTGAA
TGCAAAAATGAATGTactcgaaattttcttaaatgaaaatatttaaattt
ttttgggtatACGACACGTCACTCAACATCATGATGTCCAggattttagt
actgaccccccccctctGGTATAGTAAGGACCTCTGTGGATTATGAGCTG
TTTTCAAGACTTTTAATTctgtatttttttcatataaactTATAGCTAAT
GCAAGAGATGGGGACTGGAACTGTCCAAGGTGAGATTGCATCTGATTTAT
CACCTTAAGtagattaaattttgcataggggtcgtccatatagtacgtat
attccaaatatttgacacctCCTTCTCTTGGACGCagagaaaaaagaaat
gacGCCATTCAAACAATAGGCGTACTCTTCAGTCTTTATGGGTGGCTCCA
TTTATTAATTTGAGATCGAAATTTCGACCCAACCCCTAGGAGAAGGAAAA
ATTTCGTTCATGCAAAATTTTAGATTCTCAATTCGCTGAAAAAGTCCAGG
TTGAAAAGATACTGAATTGTTTCGAAGGAATTTTAGTTCGTGTTCTCAAA
ATTCTTAattcaatttcttattttattccTTTTACAGCTGTAATAACTTG
AATTTCGCAAGACGAAGTGAATGTAATAGATGTCAAACACCAAGAGCTGA
TGGTGGTGGTGGCGGCGGTGGTTCCTCTTATGGCGGAGGTAATATTTATG
cccttttgaaataattttaatgTATAACCATAGTTTCCTTCTGGGTCGGC
CCACTCAGAAATTTTAGATTCCCCGGTTGtcaaatccccccccccctgaa
aatgaaaaaatgcttTTCCGGACCCACCCTTTTGTGTTTTCCCTCCCCCA
GAAATgttaaacccccccccctcactTTTAACGACCTGGATTCGGGCAAT
TAATTGTTATGCATCTTTGGCACTTGCACACTAAAATGTAGTTTGTTGAT
GTTCTCTTTCTTAGATAATTGCTAAGTATCCAAGAAAGAAATCTGCCATG
TGATATGAGGAAGAAAAAACATGCATatgtaaaaaaaactaaacagaCTT
TCtgtcaagaaattgaaaaggttccccccccccccccaaaaattttcaat
tcccCCGTTGtcaaatccccccccccctgaaaatgaaaaaatgcttTTCC
GGACCCACCCTTTTGTGTTTTCCCTCCCCCAGAAATgttaaacccccccc
cctcactTTTAACGACCTGGATTCGGGCAATTAATTGTTATGCATCTTTG
GCACTTGCACACTAAAATGTAGTTTGTTGATGTTCTCTTTCTTAGATAAT
TGCTAAGTATCCAAGAAAGAAATCTGCCATGTGATATGAGGAAGAAAAAA
CATGCATatgtaaaaaaaactaaacagaCTTTctgttaaaaagttgaaaa
gttctccccccccccccgaaaaaaattttattgcacCTTTAGGAACCCCA
CACCCTGGATCTCCATTTTCCTTTTGCCCCCCTTTTGGAAAGAACATCCC
CCAGCAGAAAGGAGGGGGGAACCATGATAACTCTTTTCGTCAGACTTTTA
GAATTctactttttgagttttgaattTCCAGACTTTTTTAATTAACCTAA
TATAAATAATTGAAACATTGAGAaacaatttataaaatattataaaaaat
gatttcttttcttACACTCAACTGCACTCCAGAATAACAATGGGCCCCGT
ATATTATATTCTCTTGAATTCGTGGTTTGTCTTTAAACCAACGTTCCTTG
TCTACTGTAAGTAAGGCTGGCATTGTTGTGTAACTGGTGTAAATGAAAGA
TGGTTTCGCCGGTAGAAAAAAAGGGGTAATTCTTTTTATCTTAACTACTT
TCTAGGACGAGGTGGTGATCGCGGAGGCGGTCGTGACAGGTATGTAAACA
ACCATTTTTTACTTAAAGTGTTGCTAGTTTTTTCGTTGTTTTATCTTAGT
CTTTTGAACATCAATAGATGTTTAAAGGTACTAATTTTGGCCAAGAAAAC
TTCGCTAGTGTCGTTCTATAAAGCTTCTTAAACTTGTAATATTTTCTACA
TAAAAGATGAAATTGCTTTCTTTGTACTAAAGTATAAATACGTGGTCTTC
AATCTACTCTAATGTCTAATCATGTTCCACTGCCATATTTGTGCAAATAG
AAGATCGAGTACACGATCAATTTCCGATGCAAATAATGTTTTTTGTGTAC
AGGAAATTATTGCCAACGTCACTACATCTTTAAAtgttttgataatgttt
tcctCTTGTACTCGTAATTGTNCCCCCCCccctggaagagcccaatgctc
TTTAGTGATTTCATCGTTGAAATGCAAACTTAAAAATTAAGATCTATGAA
TTTTCGAGTGTAGATTTCTTCATGTGATAACTTGTTGGTCACCAGCTTTG
ACGTTTTCCCTTCAATGTGTGTTAATTTGAAGATCATCTTACACATAGGT
cgtttcacagtcgcaaagcgtaatgggtaatcaggacccctgtgcgctaa
tgacgacttagtatttgtccaaagttttgaaaaaatttgaagaattttgc
gtctagccaacagaaAGCCGTTATGGAGTCGCAATCtgtcctgattaccc
ataatCCATTTCGACAGTGAAATGGCCTATTCATGACGTCGTGTTTTCTA
CGAAAGACcctggtttttgccagtagtggcaaatttgaTCTAACTTTAGT
CTAgtaaaaatttgccactactggctaaaagcggggtctttccgtagaaa
acattacgtcatgaattcAACTGTTGTCTTTATTATTTCAGAGATCGTGG
TGATCGTGATCGTTCTGACAGAAGATCGTCGAGACCTTATTGAGCACCAT
GTTTCATTCCACTACAACCAAAAATGTGTCGAACCTCGAGCTACTTCAAC
ATAAAACGAAAACGTGAAACTTTAAAACACGTGACGATGATTAATCGATT
CACATGTGCGTtaacaatttcaatttgaaagtGTTGTCAATCCTTCAACC
AGAATCTCGAGCTCAAAAGACGGAGTTTTAACCCAAAAATGATTGAATTA
TACCGGACATTGTATATAACTAACGGGCATCTGCAGATCACCCGGAATAT
TCCGTCCACGCTTATATGATTCTTTTTTTGTATCATAAATTTTAAACTgg
aaataaaactttttcaaacagaaTTGACTATCTCTCTGTTATTTTTATGT
TAATTTTGAACGAAGAAGAACTCTATTGTTTAAATTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001980XLOC_001980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003543-exon-sc0000030-1491911889:182549..182652TCONS_00003543-exon-sc0000030-1491911889:182549..182652Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:182549..182652TCONS_00003543-exon-sc0000030-1510915933:182549..182652Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:182549..182652TCONS_00003543-exon-sc0000030-1575043694:182549..182652Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:185506..185630TCONS_00003543-exon-sc0000030-1491911889:185506..185630Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:185506..185630TCONS_00003543-exon-sc0000030-1510915933:185506..185630Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:185506..185630TCONS_00003543-exon-sc0000030-1575043694:185506..185630Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:185774..185934TCONS_00003543-exon-sc0000030-1491911889:185774..185934Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:185774..185934TCONS_00003543-exon-sc0000030-1510915933:185774..185934Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:185774..185934TCONS_00003543-exon-sc0000030-1575043694:185774..185934Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:190623..190744TCONS_00003543-exon-sc0000030-1491911889:190623..190744Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:190623..190744TCONS_00003543-exon-sc0000030-1510915933:190623..190744Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:190623..190744TCONS_00003543-exon-sc0000030-1575043694:190623..190744Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:191117..191179TCONS_00003543-exon-sc0000030-1491911889:191117..191179Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:191117..191179TCONS_00003543-exon-sc0000030-1510915933:191117..191179Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:191117..191179TCONS_00003543-exon-sc0000030-1575043694:191117..191179Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:191620..191800TCONS_00003543-exon-sc0000030-1491911889:191620..191800Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:191620..191800TCONS_00003543-exon-sc0000030-1510915933:191620..191800Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:191620..191800TCONS_00003543-exon-sc0000030-1575043694:191620..191800Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:191993..192052TCONS_00003543-exon-sc0000030-1491911889:191993..192052Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:191993..192052TCONS_00003543-exon-sc0000030-1510915933:191993..192052Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:191993..192052TCONS_00003543-exon-sc0000030-1575043694:191993..192052Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:192944..192977TCONS_00003543-exon-sc0000030-1491911889:192944..192977Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:192944..192977TCONS_00003543-exon-sc0000030-1510915933:192944..192977Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:192944..192977TCONS_00003543-exon-sc0000030-1575043694:192944..192977Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:193336..193436TCONS_00003543-exon-sc0000030-1491911889:193336..193436Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:193336..193436TCONS_00003543-exon-sc0000030-1510915933:193336..193436Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:193336..193436TCONS_00003543-exon-sc0000030-1575043694:193336..193436Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:194604..194637TCONS_00003543-exon-sc0000030-1491911889:194604..194637Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:194604..194637TCONS_00003543-exon-sc0000030-1510915933:194604..194637Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:194604..194637TCONS_00003543-exon-sc0000030-1575043694:194604..194637Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1491911889:195540..195988TCONS_00003543-exon-sc0000030-1491911889:195540..195988Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1510915933:195540..195988TCONS_00003543-exon-sc0000030-1510915933:195540..195988Clytia hemisphaericaexon
TCONS_00003543-exon-sc0000030-1575043694:195540..195988TCONS_00003543-exon-sc0000030-1575043694:195540..195988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:182549..195988 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.9433	56.1953	82.3144	79.3948	66.3611	32.137	74.156	55.0678	53.888	67.6207	58.2383	42.2902	53.6367	63.3526	50.2276	55.37	60.4358	58.2909	30.786	32.0996	49.3649	65.4123	62.2486	52.2487	20.095	19.1131	27.7679	29.0913	49.2565	55.2635
Blast
[Close]
BLAST of TCONS_00003543 vs. Swiss-Prot (Human)
Match: RBP56 (TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.278e-25
Identity = 73/163 (44.79%), Postives = 102/163 (62.58%), Query Frame = 3 
Query:  429 DTVFVAGLPPSASTTEIAEFFGKIGIIKTDRRTREPKIWMYKNHD-GTPKGECTITYDDCDASQAAVSWFNGKEYDSSHVLKVSIAQRKAPEGGFQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRPNARDGDWNC--PSCNNLNFARRSECNRCQTPR 908
            +T+FV GL    ST ++ EFF +IGIIKT+++T +P I +Y + D G PKGE T+++DD  +++AA+ WF+GKE+   +++KVS A R+ PE             RG G G G RG GG  G  G  G   + + GDW C  PSC N+NFARR+ CN+C  PR
Sbjct:  234 NTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEF-HGNIIKVSFATRR-PE-----------FMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPR 383
The following BLAST results are available for this feature:
BLAST of TCONS_00003543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBP565.278e-2544.79TATA-binding protein-associated factor 2N OS=Homo ... [more]
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