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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003542 ID=TCONS_00003542|Name=TCONS_00003542|organism=Clytia hemisphaerica|type=transcript|length=1599bpRun BLAST on NCBI protein sequence of TCONS_00003542-protein >TCONS_00003542-protein ID=TCONS_00003542-protein|Name=TCONS_00003542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp MSQYNNYGQGGGGQQGGYGGGQQQSYGNYDQSSGGGYGASGGYNQGYQQQRun BLAST on NCBI transcript from alignment at sc0000030:182437..195988+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003542 ID=TCONS_00003542|Name=TCONS_00003542|organism=Clytia hemisphaerica|type=transcript|length=13552bp|location=Sequence derived from alignment at sc0000030:182437..195988+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:182437..195988+ >TCONS_00003542 ID=TCONS_00003542|Name=TCONS_00003542|organism=Clytia hemisphaerica|type=CDS|length=11952bp|location=Sequence derived from alignment at sc0000030:182437..195988+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003542 vs. Swiss-Prot (Human)
Match: RBP56 (TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 5.889e-25 Identity = 73/163 (44.79%), Postives = 102/163 (62.58%), Query Frame = 3
Query: 594 DTVFVAGLPPSASTTEIAEFFGKIGIIKTDRRTREPKIWMYKNHD-GTPKGECTITYDDCDASQAAVSWFNGKEYDSSHVLKVSIAQRKAPEGGFQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRPNARDGDWNC--PSCNNLNFARRSECNRCQTPR 1073
+T+FV GL ST ++ EFF +IGIIKT+++T +P I +Y + D G PKGE T+++DD +++AA+ WF+GKE+ +++KVS A R+ PE RG G G G RG GG G G G + + GDW C PSC N+NFARR+ CN+C PR
Sbjct: 234 NTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEF-HGNIIKVSFATRR-PE-----------FMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPR 383 The following BLAST results are available for this feature:
BLAST of TCONS_00003542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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