TCONS_00003541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003541
Unique NameTCONS_00003541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003541 ID=TCONS_00003541|Name=TCONS_00003541|organism=Clytia hemisphaerica|type=transcript|length=1419bp
CCTCGTGTATAAATACAACAAAATTCGTTCTTATTTGTGATATACATATA
TACGCAGTACAGATCTTCAAACCGCATTTAATCAGTAAGAATTCAAGCTA
AGTAGAATCGCACGCGATTCGCCAAGAgaagaagaaatagaaaaatattt
ttactatgGatttgaaGAAAGAACCGATTACATTTTCTATAACCGGGATC
TTATCGACTGGGACATCAAGTCGAAGCTGTGATAATGTTGTCGCATCGAG
AGCAATGCATTTTGCAGACCGAAGCTCACCACCATCTACCGTTCATAGTT
ATCGTACAGAAGTCATAAAATCCAGACCAGAATGTTATGTTAGACGCGAG
GAAGAGAGATATTTTGCAGACTATTTTGGAAACAAGCGAAAAATGTCGCA
TTCACCACCTGAACTGTATGCGCCCGTGCGCTCTGATGCAGTTTTTGAGG
AATATCATGAATCAAGGGAAAGCACGCCCTCTCCGCCCAAAATATTTCGC
CCCAGCTTGTACACCCGGCACTCAGATGATAAATACCATCCAATATCATC
ACCACCCTTGACTATACCAAACAGCCGATCAAATCACGAAACAACTATGA
CGTCATCTCAAAATGGTAGATTCCGCCCACCGCCCTTCTTTGATACAGTC
CTTACATTACGCAAACGTTTATATTATTTGGGTGGTAAAGAGTTTTCGGT
TGATGAACCTCCCTCAGATCGAAATGTTCACAAAATGTGGCGTTCAATTG
AAAAACACAAAGTAGACTATTCGCTACAACATTATTTCTACGTCGCAAGT
CTCAGTAACCGTTGCTTCAGCTTGGTTCAANCTACAACATTATTTCTACG
TCGCAAGTCTCAGTAACCGGTGCTTCAGCTTGGTCCAGCGTATTCATCAT
AAAGTGTCGTGCGGTCTCTTAGAGGGTTCACGCGACCGCGAAGTCAATCA
AagttatttcaatttcttgTACGGAAAAACTGAAGACGAGAGATACGAAT
TGTTACGTTTATTAGAGACGGGGGAAATCTCACCCAAAACAATCGCAAAG
GCCAAACAAAACAATTCGAAGAAATCATCCGACGAAAGCTCAAACAATAA
CAACACGTGTTCGACTAAATGCCATAACTGTAAAGAACAAATTGAACGAC
TGATAAAGGAAAAAGAAATACTGGAAAAACAATTGATGCATCTTCAGAGG
AAACAAAACCAGgTGAATCTCGTTGATTTAGACTTAAATGGACGATTCAA
AAGTAAATCCATTTGACGAATTACAGCGGGGTGTATTTATTACAAGATTT
AGGGAttttttcttacaatttttttaataaaagatttttcaaagatgtaT
TTATATAGGAAATTTTAACACGAAGAATATATTATCTAAGGAACAATTAC
TAATTTATCTCCCTTACAG
Run BLAST on NCBI

transcript from alignment at sc0000030:140137..145087+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003541 ID=TCONS_00003541|Name=TCONS_00003541|organism=Clytia hemisphaerica|type=transcript|length=4951bp|location=Sequence derived from alignment at sc0000030:140137..145087+ (Clytia hemisphaerica)
CCTCGTGTATAAATACAACAAAATTCGTTCTTATTTGTGATATACATATA
TACGCAGTACAGATCTTCAAACCGCATTTAATCAGTAAGAATTCAAGCTA
AGTAGAATCGCACGCGATTCGCCAAGAgaagaagaaatagaaaaatattt
ttactatgGGTAAGAATTTAATTGATTTTGCACAGGTCATActgaaatac
acgcttttttataagaattgtgtttttcaatttcatcatggatatggttt
ttaacattttgggaaaaatcatcctgaaattaTTCTtacttacagtattc
ttaggttaggatctaAATCTTTGGCATTTTACAGTAAGAAATACTCTCAA
ATTGCATTCTTCAGctaccaaatttcatgatggtgatGTTTTTAGCACAT
TCTTATTTTTCGGCTTATTAAGTCTTATAGAATACATTcacataaaaaac
gtgtacccaaAACGTGTTTTTGATCAATTGAAGCTAAACCTTGACCTTGA
CGTGAAACAAACAACGTTAAACTTCCATTCTTTATATCCCTGGGTGGATA
Agctattcaaattattttgataatttttaagagccgggtttttattttat
cccTGAAGAGTACTAATTCAACTTTCAGGTGATTGAGAGTTTTTCGAATT
TAACATCATAAGAACACGGCTAGCCTTAAAATCTACGACAttaatgttta
attttttatttttagatttgaaGAAAGAACCGATTACATTTTCTATAACC
GGGATCTTATCGACTGGGACATCAAGTCGAAGCTGTGATAATGTTGTCGC
ATCGAGAGCAATGCATTTTGCAGACCGAAGCTCACCACCATCTACCGTTC
ATAGTTATCGTACAGAAGTCATAAAATCCAGACCAGAATGTTATGTTAGA
CGCGAGGAAGAGAGATATTTTGCAGACTATTTTGGAAACAAGCGAAAAAT
GTCGCATTCACCACCTGAACTGTATGCGCCCGTGCGCTCTGATGCAGTTT
TTGAGGAATATCATGAATCAAGGGAAAGCACGCCCTCTCCGCCCAAAATA
TTTCGCCCCAGCTTGTACACCCGGCACTCAGATGATAAATACCATCCAAT
ATCATCACCACCCTTGACTATACCAAACAGCCGATCAAATCACGAAACAA
CTATGACGTCATCTCAAAATGGTAGATTCCGCCCACCGCCCTTCTTTGAT
ACAGTCCTTACATTACGCAAACGTTTATATTATTTGGGTGGTAAAGAGTT
TTCGGTTGATGAACCTCCCTCAGATCGAAATGTTCACAAAATGTGGCGTT
CAATTGAAAAACACAAAGTAGACTATGTAAGTTTGCTTCCCtttttctat
ttaaaaaaacttctacactatctttttataaaaacgtcaaaatttgGTTC
TTATTGaatttccgggggggggggcagtcaggcaaattgaccGGGTATgt
gcggcggttaagggtatgtttttcaaaatatcagaaatgcactgtaaggg
tggacttttgataaatgcactgtaagggtggaaatttcagcaaatctgag
aaaaattgcaaatttttgctcgaaaatgttgacttttttttgctctgaaa
gagtttaaaatttgaaaaaatgcactgtaagggtatgaatttcaccgatt
ttttctgcactgtaagggtgcgattctaaaagccgaTTTTTTCGCCGCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTTGAAGCCTCacagtatgttcttagaatctTTGTTCGTATA
TGAAAAACCTGTAAGGTATTTCAAGAGAATAAACTTTCGTAAagtctatt
ttcaataaattttataGACTTCTTTCttctaaataaaaacttacttaGGT
ACTTAGGGAAAGGGaagatttttagaaaagaaTTTTAGCTTATGGTGATT
TTTCTTGATATGGTTCCagttttttaactatttttttatccatttttctt
tttacttcaGTCGCTACAACATTATTTCTACGTCGCAAGTCTCAGTAACC
GTTGCTTCAGCTTGGTTCAANCTACAACATTATTTCTACGTCGCAAGTCT
CAGTAACCGGTGCTTCAGCTTGGTCCAGCGTATTCATCATAAAGTGTCGT
GCGGTCTCTTAGAGGGTTCACGCGACCGCGAAGTCAATCAAagttatttc
aatttcttgTACGGAAAAACTGAAGACGAGAGATACGAATTGTTACGTTT
ATTAGAGACGGGGGAAATCTCACCCAAAACAATCGCAAAGGTATACCAAT
TTATCGATATACCGTGTTTTTATGAAAATGGTGTTTTCCATTTTATTACG
GATTTAGTCTGAATCGCTTAACtttatagatatacttcctataagaaact
cttttcgattgaggatgagcagaagcttATTATGCATAATTGCgtaccgc
gctgaatctaaaaatagattttatttttgacatgatcattactctcgatg
tgtttgtacgtatctttaattgagccgcgttaaattgtgggattgcaact
cgtacaaatgtcaaaaaacagtgaaaagtaataattatgacgtatgtgtT
GCGGAGAGCTAGTGCATAAATTGGCTTCTTTGGGAAAGTTTTGGGCGTCT
CTAGGGGACAGTTGGCAAAGccctaaaaatggcattcttaggttccgTTG
CCAATttccatgatgatgatattTATAATTCTTcagccaatttcatcatg
aatatttttataaagtatatttttgtaaaaaactcaTCACAGGCCAAACA
AAACAATTCGAAGAAATCATCCGACGAAAGCTCAAACAATAACAACACGT
GTTCGACTAAATGCCATAACTGTAAAGAACAAATTGAACGACTGATAAAG
GAAAAAGAAATACTGGAAAAACAATTGATGCATCTTCAGAGGAAACAAAA
CCAGGTAAATATAATAAACTTTTTAGAACCTTTTGTAACCTCCATTTTCA
TAGAATGGAGCCGTTTCCTGGCTCGCTTTTAGGCTAATTGAGCCGTTTAT
AATCCATGTAGTAGAGTTGTATTTGTGTTATGCTGggctcttcaaaaaaa
attgaatatgggaggtggaggatatagcattttttggaaatttaccccac
ggacattgtgaattttgattCACCCGGACAACAGATCTCACCCCcgaaca
agcatcagttgaccccggacattcaaaatcacccctaatcaaGGCAAGTT
TGCCttcaaaacaaggcaaattttgcaaatttttcactacccccggacaa
aatatccaatatatcctccactccacatgtacaaaaatttttctAGAAGA
GCCCATTGCAATAATCGTAACGGGATAACATCCGGCTGTATAAACTACAA
TTTGTCCCTTCAGTTATTTTTTGCTTGTTCTGCTTGTCTATGAATTACGG
TAGTCGTCTAGCTACtgctattttcaaaaaactcctcTTGTAACACTCTT
TTGAAACCAAACCTTtagcttaagggctctgaccatagtgaatttttcat
aattgccgtgtttaaaatgtgttttctgactgatgtaaccaacaaaacta
tggcatgttatacattttctgttagacaaactattcctgaatctgaaaat
tcaaaaattgcattgaaaaaaatttgatgaagaagaaaataaagactttt
gcgaggaactttgaagagcttagtttcggcgaagaaaaaacattttgaga
aaattttcgtaGTAGAttgtgtatcttttaccgaacaataaaaatttttg
cggaaaatttttgtaaatgcttctttgtctcaaaatcttcaaaatagtgg
tttttcatcaattttgcatctggattttgcttaaaaaaacagtcataact
tttgacacatctttttagaaaaattttccgcaaaatttaaaatagttcaa
ttctttgcggacagtttgaaaaaagttcgaaacaaaaaggttaattaccc
attaaaacttagcaatttttataaaagaaggtgatgcaacatattattaa
cgtctttttaaagttcataacgtcatttttgcaattaaggtatgtgttca
cctttcttgacacattctctttaattgatcatatctttagaacaacaaat
ttttatacatcaaaagtatatattttctgaaagccaataatattctcttt
ctaatggtaaaagtttcagctggattTAAAAAactactcttaagggattt
gattaaaaagcaatttatagaggcaattctttgttaaaagtgttaaagaa
cctatagaacataacttttatgttcaaatactaaaatcaattttctgact
atggtcagagcccttaactgaATTCAGTTGTTaattcgttgaaaagataa
tcgcGAGCTCTAGAATTAACGACGATTCGGTATGCACACACTCAGCATTC
CCAAACCCTACTactaaaacatagaaaataagtTACTATAAAATTTACTA
AGTTCAATTATGATTACAAtaaattcttctttttgttattttaggTGAAT
CTCGTTGATTTAGACTTAAATGGACGATTCAAAAGTAAATCCATTTGACG
AATTACAGCGGGGTGTATTTATTACAAGATTTAGGGAttttttcttacaa
tttttttaataaaagatttttcaaagatgtaTTTATATAGGAAATTTTAA
CACGAAGAATATATTATCTAAGGAACAATTACTAATTTATCTCCCTTACA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001979XLOC_001979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003541-exon-sc0000030-1491911889:140137..140295TCONS_00003541-exon-sc0000030-1491911889:140137..140295Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1510915933:140137..140295TCONS_00003541-exon-sc0000030-1510915933:140137..140295Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1575043694:140137..140295TCONS_00003541-exon-sc0000030-1575043694:140137..140295Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1491911889:140852..141462TCONS_00003541-exon-sc0000030-1491911889:140852..141462Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1510915933:140852..141462TCONS_00003541-exon-sc0000030-1510915933:140852..141462Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1575043694:140852..141462TCONS_00003541-exon-sc0000030-1575043694:140852..141462Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1491911889:142347..142626TCONS_00003541-exon-sc0000030-1491911889:142347..142626Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1510915933:142347..142626TCONS_00003541-exon-sc0000030-1510915933:142347..142626Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1575043694:142347..142626TCONS_00003541-exon-sc0000030-1575043694:142347..142626Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1491911889:143129..143290TCONS_00003541-exon-sc0000030-1491911889:143129..143290Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1510915933:143129..143290TCONS_00003541-exon-sc0000030-1510915933:143129..143290Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1575043694:143129..143290TCONS_00003541-exon-sc0000030-1575043694:143129..143290Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1491911889:144881..145087TCONS_00003541-exon-sc0000030-1491911889:144881..145087Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1510915933:144881..145087TCONS_00003541-exon-sc0000030-1510915933:144881..145087Clytia hemisphaericaexon
TCONS_00003541-exon-sc0000030-1575043694:144881..145087TCONS_00003541-exon-sc0000030-1575043694:144881..145087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:140137..145087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00473025	0	0	41.783	42.5546	24.2085	26.4573	7.14618	6.91712	3.34053	2.60846	0.0744853	0.293317	0.780969	0.694424	0.364567	0	1.33358	0.876772	0.349728	0.807608	0	0	1.399	1.50444	0.442246	0.293734	0	0.140339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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