TCONS_00003533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003533
Unique NameTCONS_00003533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003533 ID=TCONS_00003533|Name=TCONS_00003533|organism=Clytia hemisphaerica|type=transcript|length=664bp
GTCTGTGTAATATATTATCATGATATTACGATATAACATAGTTGTATATT
ATcaaacgtaatatgttgcgcggtggaaaatagagtctgtgtttacatTG
AGCCCCTCCGACTATTTTTCGCCCGCGCGGACAAAATTTCCGCCCGACTG
CTATTTTGCATGTTTGAGGTTATTCTTTATTATTcgaattcgtcttagac
tatagcatagtctaggtCTTCTTAAGTTACGATCCGAATTCAATCTAAAT
CGGTCTAAATTCGATTTTTCTATAATCCAtaagaatattgaaattcatga
TAGAATCggccaaaaaatttagaatatgctaaagatatcaaaattttagt
gattttccaTTTTATACTACAAGTTTAAGTCAATGTCAgttttacatttt
aaatttaCGTTGAATTTAAATCCTAACtcaagaatgctgtaagaatattt
taggatgattttccccaaaaggctcagaatatccatgatgaaatcgAAAA
GCACCGTTCTTATGAGAAAAAGTGTGTATTCAAAACTAGACCATACTTGT
TGCTAAAATATAGTCCCCCTAAGGTTCTCTCAGAAGTCCCGCACGATTGT
AAACTCCATATGACACAAGAAATCCTGGGACCAattcttttaacttttta
ctTCTTCGTCAATT
Run BLAST on NCBI

transcript from alignment at sc0000028:705765..706428

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003533 ID=TCONS_00003533|Name=TCONS_00003533|organism=Clytia hemisphaerica|type=transcript|length=664bp|location=Sequence derived from alignment at sc0000028:705765..706428 (Clytia hemisphaerica)
AATTGACGAAGAagtaaaaagttaaaagaatTGGTCCCAGGATTTCTTGT
GTCATATGGAGTTTACAATCGTGCGGGACTTCTGAGAGAACCTTAGGGGG
ACTATATTTTAGCAACAAGTATGGTCTAGTTTTGAATACACACTTTTTCT
CATAAGAACGGTGCTTTTcgatttcatcatggatattctgagccttttgg
ggaaaatcatcctaaaatattcttacagcattcttgaGTTAGGATTTAAA
TTCAACGtaaatttaaaatgtaaaacTGACATTGACTTAAACTTGTAGTA
TAAAAtggaaaatcactaaaattttgatatctttagcatattctaaattt
tttggccGATTCTAtcatgaatttcaatattcttaTGGATTATAGAAAAA
TCGAATTTAGACCGATTTAGATTGAATTCGGATCGTAACTTAAGAAGacc
tagactatgctatagtctaagacgaattcgAATAATAAAGAATAACCTCA
AACATGCAAAATAGCAGTCGGGCGGAAATTTTGTCCGCGCGGGCGAAAAA
TAGTCGGAGGGGCTCAatgtaaacacagactctattttccaccgcgcaac
atattacgtttgATAATATACAACTATGTTATATCGTAATATCATGATAA
TATATTACACAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001975XLOC_001975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003533-exon-sc0000028-1491911889:705765..706428TCONS_00003533-exon-sc0000028-1491911889:705765..706428Clytia hemisphaericaexon
TCONS_00003533-exon-sc0000028-1510915933:705765..706428TCONS_00003533-exon-sc0000028-1510915933:705765..706428Clytia hemisphaericaexon
TCONS_00003533-exon-sc0000028-1575043694:705765..706428TCONS_00003533-exon-sc0000028-1575043694:705765..706428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:705765..706428 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.234121	0.456216	0.530201	0.604612	0.525755	0.249275	0.701727	0.0995553	0.295266	0.162776	0.157994	0.207719	0.933434	1.40022	0.531308	0.427631	0.351204	0.659951	0.248661	1.12756	0.376944	0.231497	0.268207	0.162559	0.418581	0.672433	0.330793	0.228208	0.259632	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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