TCONS_00003530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003530
Unique NameTCONS_00003530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003530 ID=TCONS_00003530|Name=TCONS_00003530|organism=Clytia hemisphaerica|type=transcript|length=412bp
TGCGAGTCAGATGTTAATTTGTtggtggttggatttttcagTGGGCCAAC
TTTAGGTTTAGTTTTTGAGAATCTTTTTGCATAGGAGTAGAAGTATTTAG
GATTGCGTTTGATTTTCAGTGAGGCATCCAGCTCTGCTTTATCGCGTTCA
TTTTTGTGGGATTGCTGTAGCATCAGTTCAAAGTCAATTAGTTTctgatt
tgttttattggttttgaaattctttttggagAGTCTTTTACGTTTTCTCA
TAAGAATACGACGATCTCttggaatctttgaaaatttttttggaggtTTT
CTCTTTGGAAAATGCTTTTTCACAATCAGAAGACATTTTTCAAGGAAGTT
GGCATATTGACGATTTGGGTCATATAGATTTATGTCCAGTTCTTGAGACC
AATTAATGtctg
Run BLAST on NCBI

protein sequence of TCONS_00003530-protein

>TCONS_00003530-protein ID=TCONS_00003530-protein|Name=TCONS_00003530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
DINWSQELDINLYDPNRQYANFLEKCLLIVKKHFPKRKPPKKFSKIPRDR
RILMRKRKRLSKKNFKTNKTNQKLIDFELMLQQSHKNERDKAELDASLKI
KRNPKYFYSYAKRFSKTKPKVGPLKNPTTNKLTSDS
Run BLAST on NCBI

transcript from alignment at sc0000028:623557..623968

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003530 ID=TCONS_00003530|Name=TCONS_00003530|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0000028:623557..623968 (Clytia hemisphaerica)
cagaCATTAATTGGTCTCAAGAACTGGACATAAATCTATATGACCCAAAT
CGTCAATATGCCAACTTCCTTGAAAAATGTCTTCTGATTGTGAAAAAGCA
TTTTCCAAAGAGAAAacctccaaaaaaattttcaaagattccaaGAGATC
GTCGTATTCTTATGAGAAAACGTAAAAGACTctccaaaaagaatttcaaa
accaataaaacaaatcagAAACTAATTGACTTTGAACTGATGCTACAGCA
ATCCCACAAAAATGAACGCGATAAAGCAGAGCTGGATGCCTCACTGAAAA
TCAAACGCAATCCTAAATACTTCTACTCCTATGCAAAAAGATTCTCAAAA
ACTAAACCTAAAGTTGGCCCActgaaaaatccaaccaccaACAAATTAAC
ATCTGACTCGCA

Coding sequence (CDS) from alignment at sc0000028:623557..623968

>TCONS_00003530 ID=TCONS_00003530|Name=TCONS_00003530|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000028:623557..623968 (Clytia hemisphaerica)
gaCATTAATTGGTCTCAAGAACTGGACATAAATCTATATGACCCAAATCG
TCAATATGCCAACTTCCTTGAAAAATGTCTTCTGATTGTGAAAAAGCATT
TTCCAAAGAGAAAacctccaaaaaaattttcaaagattccaaGAGATCGT
CGTATTCTTATGAGAAAACGTAAAAGACTctccaaaaagaatttcaaaac
caataaaacaaatcagAAACTAATTGACTTTGAACTGATGCTACAGCAAT
CCCACAAAAATGAACGCGATAAAGCAGAGCTGGATGCCTCACTGAAAATC
AAACGCAATCCTAAATACTTCTACTCCTATGCAAAAAGATTCTCAAAAAC
TAAACCTAAAGTTGGCCCActgaaaaatccaaccaccaACAAATTAACAT
CTGACTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001972XLOC_001972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003530-proteinTCONS_00003530-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003530-exon-sc0000028-1491911889:623557..623968TCONS_00003530-exon-sc0000028-1491911889:623557..623968Clytia hemisphaericaexon
TCONS_00003530-exon-sc0000028-1510915933:623557..623968TCONS_00003530-exon-sc0000028-1510915933:623557..623968Clytia hemisphaericaexon
TCONS_00003530-exon-sc0000028-1575043694:623557..623968TCONS_00003530-exon-sc0000028-1575043694:623557..623968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:623557..623968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.576896	0.893329	0.587748	1.22699	1.77418	0.689741	2.48915	1.27395	1.07778	0	1.14565	0.366409	0.407291	1.53357	0.322305	0.271134	0.140436	0.261044	0.234571	0.619173	0	0.497689	0	0	0.37528	0.204866	0	0	0	0.502933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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