TCONS_00003529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003529
Unique NameTCONS_00003529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003529 ID=TCONS_00003529|Name=TCONS_00003529|organism=Clytia hemisphaerica|type=transcript|length=396bp
TCTAATTTGTAATTGTCAATCACTGCTTTGCAAGACTCTCCTTAGATGGT
CCAACGAGTTGGTGAAAATGCAAGTACGCTTCAATATTGTTTCACTTTAA
CTCTCATAAATTTCTCAGTATGGTGtcttttttggtgatttttaacCAAC
TTACATACCTCTTTTATTGTTCCAAAGGTTTCGGAGAGTAACTTGATGGC
TTTCTTTTACCCATGGCCAAGTTCAAAGCATGTCCATAGCAGTGGGTAAA
GAGGCATTTCGGATTTAATTCCTTGATAACAGTAGTGACCCAATTTTTCT
TTCCTGTCATAACACTGACCACGATTATCTTTCACCTTCAAACTCTTCTG
ATAATTTTATCTTTGATTATGTTGGCAATAGACATCGCATCTGTTA
Run BLAST on NCBI

transcript from alignment at sc0000028:620336..620731

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003529 ID=TCONS_00003529|Name=TCONS_00003529|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0000028:620336..620731 (Clytia hemisphaerica)
TAACAGATGCGATGTCTATTGCCAACATAATCAAAGATAAAATTATCAGA
AGAGTTTGAAGGTGAAAGATAATCGTGGTCAGTGTTATGACAGGAAAGAA
AAATTGGGTCACTACTGTTATCAAGGAATTAAATCCGAAATGCCTCTTTA
CCCACTGCTATGGACATGCTTTGAACTTGGCCATGGGTAAAAGAAAGCCA
TCAAGTTACTCTCCGAAACCTTTGGAACAATAAAAGAGGTATGTAAGTTG
gttaaaaatcaccaaaaaagaCACCATACTGAGAAATTTATGAGAGTTAA
AGTGAAACAATATTGAAGCGTACTTGCATTTTCACCAACTCGTTGGACCA
TCTAAGGAGAGTCTTGCAAAGCAGTGATTGACAATTACAAATTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001971XLOC_001971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003529-exon-sc0000028-1491911889:620336..620731TCONS_00003529-exon-sc0000028-1491911889:620336..620731Clytia hemisphaericaexon
TCONS_00003529-exon-sc0000028-1510915933:620336..620731TCONS_00003529-exon-sc0000028-1510915933:620336..620731Clytia hemisphaericaexon
TCONS_00003529-exon-sc0000028-1575043694:620336..620731TCONS_00003529-exon-sc0000028-1575043694:620336..620731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:620336..620731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189721	0	0.214811	0	0	0	0	0.456702	0.159874	0	0	0.126353	1.00942	1.83451	0	0.11561	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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