TCONS_00003527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003527
Unique NameTCONS_00003527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003527 ID=TCONS_00003527|Name=TCONS_00003527|organism=Clytia hemisphaerica|type=transcript|length=367bp
TCCGACTGGTGGTATGCTGTTTTAGCGTCTGCACAAATCCCTGCAATCTT
TACCGTCCTTATATGGGGACCAATCAGCGACGCCATCGGACGGAAGAAAG
CCATGATCGTAATCCCAATCGTCAGTATTCTACAGAACATTATTTTCGTA
TTATGTTCTCATTTTATGAGTTCTCATGTTATATTCTTATGCATTGGAAT
GCTCTTAGCTTGTCTGTTCGGTGAGCTACCAGGTGTCATAGCTTTATCAT
GTAGTTTTATTGCTGATGTGACTCGAGGAAAGAAATCTGAAACAAGAATC
GCTCGAATGGCTTTTGTTGAGTTCAGTATCAACCTTGCTGGTATCCCTGC
AGGTTTGTTTGGAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00003527-protein

>TCONS_00003527-protein ID=TCONS_00003527-protein|Name=TCONS_00003527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
SDWWYAVLASAQIPAIFTVLIWGPISDAIGRKKAMIVIPIVSILQNIIFV
LCSHFMSSHVIFLCIGMLLACLFGELPGVIALSCSFIADVTRGKKSETRI
ARMAFVEFSINLAGIPAGLFGG
Run BLAST on NCBI

transcript from alignment at sc0000028:614958..615324

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003527 ID=TCONS_00003527|Name=TCONS_00003527|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0000028:614958..615324 (Clytia hemisphaerica)
GTCCTCCAAACAAACCTGCAGGGATACCAGCAAGGTTGATACTGAACTCA
ACAAAAGCCATTCGAGCGATTCTTGTTTCAGATTTCTTTCCTCGAGTCAC
ATCAGCAATAAAACTACATGATAAAGCTATGACACCTGGTAGCTCACCGA
ACAGACAAGCTAAGAGCATTCCAATGCATAAGAATATAACATGAGAACTC
ATAAAATGAGAACATAATACGAAAATAATGTTCTGTAGAATACTGACGAT
TGGGATTACGATCATGGCTTTCTTCCGTCCGATGGCGTCGCTGATTGGTC
CCCATATAAGGACGGTAAAGATTGCAGGGATTTGTGCAGACGCTAAAACA
GCATACCACCAGTCGGA

Coding sequence (CDS) from alignment at sc0000028:614958..615324

>TCONS_00003527 ID=TCONS_00003527|Name=TCONS_00003527|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000028:614958..615324 (Clytia hemisphaerica)
TCCTCCAAACAAACCTGCAGGGATACCAGCAAGGTTGATACTGAACTCAA
CAAAAGCCATTCGAGCGATTCTTGTTTCAGATTTCTTTCCTCGAGTCACA
TCAGCAATAAAACTACATGATAAAGCTATGACACCTGGTAGCTCACCGAA
CAGACAAGCTAAGAGCATTCCAATGCATAAGAATATAACATGAGAACTCA
TAAAATGAGAACATAATACGAAAATAATGTTCTGTAGAATACTGACGATT
GGGATTACGATCATGGCTTTCTTCCGTCCGATGGCGTCGCTGATTGGTCC
CCATATAAGGACGGTAAAGATTGCAGGGATTTGTGCAGACGCTAAAACAG
CATACCACCAGTCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001969XLOC_001969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003527-exon-sc0000028-1491911889:614958..615324TCONS_00003527-exon-sc0000028-1491911889:614958..615324Clytia hemisphaericaexon
TCONS_00003527-exon-sc0000028-1510915933:614958..615324TCONS_00003527-exon-sc0000028-1510915933:614958..615324Clytia hemisphaericaexon
TCONS_00003527-exon-sc0000028-1575043694:614958..615324TCONS_00003527-exon-sc0000028-1575043694:614958..615324Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003527-proteinTCONS_00003527-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:614958..615324 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224543	0.218964	0	0.248733	0.302808	0.239283	0.57737	0.540527	1.70296	2.10939	1.81993	1.64499	3.13606	2.63648	0.510011	2.87343	0	0.172772	2.14824	0.249776	0.217101	0.317682	0	0.234065	1.20541	1.0758	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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