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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003520 ID=TCONS_00003520|Name=TCONS_00003520|organism=Clytia hemisphaerica|type=transcript|length=1977bp
GTATTCTAGTACTTTGAAGGGATAGTTATAGACTAATCAAATTGCTAATC
TAAAATAattggaaagaagaagaaaaattaaaaaacagaaAATGGAAAAC
ATAACCATGTGTCATCAAATTATTCGAATCTCTGAAGATTTATCTCAATC
CACAAAAGACAAATTAGCACTAATATATATCacttttggtgtttttggaa
TTTTGGTCAACCTACTACTGGCAGCTCTAATCAAAGTTACCAAACGATTC
CGTAAAAACCAATCAATGAGATTGATCATGTTTTTATCGATAATCGATTT
TCAATGTTGCTTATTTTTGAATGCTTGCTATATCTTGTATATATGGTATA
TCAAATATCTTCATTGCTCTTGTATCATTGTCTTGTATGGTATCTCAAGG
TTCGCCATGTATAGCGCCTCCTACATCGCCCTTTTGATGGGACTCGACCG
ATTTTTGCATATCAAGTATTTGAATGAGTATTCGAGCGTTTACACGAAAT
TTCGATTCCGGCTTTCTTTGCTACTATACTTCATCCTAGTCTTAATTCTG
ACTCTTGTTACAGCAATTTTGAATACGAAAAATGGGTTAGGATATGCTGG
ACGTTATACTGCACCTATTAACGTTTGCTTAATAGTATTTATTGTTGCAT
TATATGTGATTTCGATCTTCATTATGAGGCGTCACAAGAAAGCCAATATC
AAGTATTCCAAACGAACTCGACGAGTAATCCGCGTGGCTTCAGCGTATCT
CATTCTGTTCATAGCCTTGCAAGGATTTCTGGGATGTTATCAAGTTATGA
GTATAATACAACGTAAACGCAAACAAAAAAGCGAAAGTGTTTTGTGGTTT
ATAGTTTATTTATTACCATCATTGAGTGGGATTCTCAATGCAGTGTTTTT
TGCCGTCATCAATAAAGTATTTGTAAAAAAGACCAGCAATAAAGTGAGGG
ATCGTGTTGTGTTAGGTGGAAAGAAGATTGAGTGTATCAAACTTAAAGAC
ATCAACAAAATTAACAACTAGTAAAGTTTACTAGAAGCTTTGTTGTTAAA
ACGTTACACGGTTGCTTAGCCAGCAGAGCTTTGAACAAAATTGACTAGTC
AAATTTTTCTTCGAACAAAAAGTACCGGGCAAGGCTGCATATCCAGCAGA
CCTTCAAACAAAATAGACTCGGTACGACTTCTTGATCAACATACAATCGA
GCAAATCAAAATAGACCTATAGATCAAAGATAAGACCCGGCACGGCTGCT
TATTAAAcagatttttaaacaaaatacacCCGGCACGGCTGCCCAGCGAT
AAAACATTCGAGCAAAATATACTCGGCATGGCTGCTTTTCCAGAAGATCT
TCAAACATAATAGACCCGGTACGGCTGCTTAGCAAGcggttttttaaaca
aaatacacCCGGCACGGCTGCTCAATCACAAAACAATCGAGCAAAATATA
CTACGCACGGTTGCTTTTCCAGCAGATCTTCAAACGAAATAGACCCGGCA
CGGCTGCTTATCAAACGGATTTTTAAACCAAATACACCCGGCACGGCTAC
TCAGCcacaaaacaatcgagcgaaaTATACTAGGCACGGCTGCTTTTCCA
GTAGATCTTCAAACATAATAGACCCGGCACGGCTGCTTGTCAAGCGGATT
TTTAAACAGAAAACATCCGGCACGGCTGCTTTTCCAGCAGATTTTCAGAC
ATAATAAACCCGGCACGTCTGCTTGGCAAGtaaacttttaaacaaaatat
acCCGGTACGGCTGCTCAGCCATAAAACAATCGAATGAGATATGCTCGGC
ACGGCTACTTTCCCAGCAAATCTtcaataattattatttttgtaccATGT
ACAACGGgacaaaggttttttttatcaaatgagtTATTACCATTGGGATA
TTTCTTCAActtatttgttctttttttagcTCCAATGTAAATAATAATGA
CGTCACGAGGATTAATATATTTACTAA Run BLAST on NCBI protein sequence of TCONS_00003520-protein >TCONS_00003520-protein ID=TCONS_00003520-protein|Name=TCONS_00003520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MENITMCHQIIRISEDLSQSTKDKLALIYITFGVFGILVNLLLAALIKVT
KRFRKNQSMRLIMFLSIIDFQCCLFLNACYILYIWYIKYLHCSCIIVLYG
ISRFAMYSASYIALLMGLDRFLHIKYLNEYSSVYTKFRFRLSLLLYFILV
LILTLVTAILNTKNGLGYAGRYTAPINVCLIVFIVALYVISIFIMRRHKK
ANIKYSKRTRRVIRVASAYLILFIALQGFLGCYQVMSIIQRKRKQKSESV
LWFIVYLLPSLSGILNAVFFAVINKVFVKKTSNKVRDRVVLGGKKIECIK
LKDINKINN Run BLAST on NCBI transcript from alignment at sc0000028:254258..256234 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003520 ID=TCONS_00003520|Name=TCONS_00003520|organism=Clytia hemisphaerica|type=transcript|length=1977bp|location=Sequence derived from alignment at sc0000028:254258..256234 (Clytia hemisphaerica)
TTAGTAAATATATTAATCCTCGTGACGTCATTATTATTTACATTGGAgct
aaaaaaagaacaaataagTTGAAGAAATATCCCAATGGTAATAactcatt
tgataaaaaaaacctttgtcCCGTTGTACATggtacaaaaataataatta
ttgaAGATTTGCTGGGAAAGTAGCCGTGCCGAGCATATCTCATTCGATTG
TTTTATGGCTGAGCAGCCGTACCGGgtatattttgtttaaaagtttaCTT
GCCAAGCAGACGTGCCGGGTTTATTATGTCTGAAAATCTGCTGGAAAAGC
AGCCGTGCCGGATGTTTTCTGTTTAAAAATCCGCTTGACAAGCAGCCGTG
CCGGGTCTATTATGTTTGAAGATCTACTGGAAAAGCAGCCGTGCCTAGTA
TAtttcgctcgattgttttgtgGCTGAGTAGCCGTGCCGGGTGTATTTGG
TTTAAAAATCCGTTTGATAAGCAGCCGTGCCGGGTCTATTTCGTTTGAAG
ATCTGCTGGAAAAGCAACCGTGCGTAGTATATTTTGCTCGATTGTTTTGT
GATTGAGCAGCCGTGCCGGgtgtattttgtttaaaaaaccgCTTGCTAAG
CAGCCGTACCGGGTCTATTATGTTTGAAGATCTTCTGGAAAAGCAGCCAT
GCCGAGTATATTTTGCTCGAATGTTTTATCGCTGGGCAGCCGTGCCGGgt
gtattttgtttaaaaatctgTTTAATAAGCAGCCGTGCCGGGTCTTATCT
TTGATCTATAGGTCTATTTTGATTTGCTCGATTGTATGTTGATCAAGAAG
TCGTACCGAGTCTATTTTGTTTGAAGGTCTGCTGGATATGCAGCCTTGCC
CGGTACTTTTTGTTCGAAGAAAAATTTGACTAGTCAATTTTGTTCAAAGC
TCTGCTGGCTAAGCAACCGTGTAACGTTTTAACAACAAAGCTTCTAGTAA
ACTTTACTAGTTGTTAATTTTGTTGATGTCTTTAAGTTTGATACACTCAA
TCTTCTTTCCACCTAACACAACACGATCCCTCACTTTATTGCTGGTCTTT
TTTACAAATACTTTATTGATGACGGCAAAAAACACTGCATTGAGAATCCC
ACTCAATGATGGTAATAAATAAACTATAAACCACAAAACACTTTCGCTTT
TTTGTTTGCGTTTACGTTGTATTATACTCATAACTTGATAACATCCCAGA
AATCCTTGCAAGGCTATGAACAGAATGAGATACGCTGAAGCCACGCGGAT
TACTCGTCGAGTTCGTTTGGAATACTTGATATTGGCTTTCTTGTGACGCC
TCATAATGAAGATCGAAATCACATATAATGCAACAATAAATACTATTAAG
CAAACGTTAATAGGTGCAGTATAACGTCCAGCATATCCTAACCCATTTTT
CGTATTCAAAATTGCTGTAACAAGAGTCAGAATTAAGACTAGGATGAAGT
ATAGTAGCAAAGAAAGCCGGAATCGAAATTTCGTGTAAACGCTCGAATAC
TCATTCAAATACTTGATATGCAAAAATCGGTCGAGTCCCATCAAAAGGGC
GATGTAGGAGGCGCTATACATGGCGAACCTTGAGATACCATACAAGACAA
TGATACAAGAGCAATGAAGATATTTGATATACCATATATACAAGATATAG
CAAGCATTCAAAAATAAGCAACATTGAAAATCGATTATCGATAAAAACAT
GATCAATCTCATTGATTGGTTTTTACGGAATCGTTTGGTAACTTTGATTA
GAGCTGCCAGTAGTAGGTTGACCAAAAttccaaaaacaccaaaagtGATA
TATATTAGTGCTAATTTGTCTTTTGTGGATTGAGATAAATCTTCAGAGAT
TCGAATAATTTGATGACACATGGTTATGTTTTCCATTttctgttttttaa
tttttcttcttctttccaatTATTTTAGATTAGCAATTTGATTAGTCTAT
AACTATCCCTTCAAAGTACTAGAATAC Coding sequence (CDS) from alignment at sc0000028:254258..256234 >TCONS_00003520 ID=TCONS_00003520|Name=TCONS_00003520|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000028:254258..256234 (Clytia hemisphaerica)
CTAGTTGTTAATTTTGTTGATGTCTTTAAGTTTGATACACTCAATCTTCT
TTCCACCTAACACAACACGATCCCTCACTTTATTGCTGGTCTTTTTTACA
AATACTTTATTGATGACGGCAAAAAACACTGCATTGAGAATCCCACTCAA
TGATGGTAATAAATAAACTATAAACCACAAAACACTTTCGCTTTTTTGTT
TGCGTTTACGTTGTATTATACTCATAACTTGATAACATCCCAGAAATCCT
TGCAAGGCTATGAACAGAATGAGATACGCTGAAGCCACGCGGATTACTCG
TCGAGTTCGTTTGGAATACTTGATATTGGCTTTCTTGTGACGCCTCATAA
TGAAGATCGAAATCACATATAATGCAACAATAAATACTATTAAGCAAACG
TTAATAGGTGCAGTATAACGTCCAGCATATCCTAACCCATTTTTCGTATT
CAAAATTGCTGTAACAAGAGTCAGAATTAAGACTAGGATGAAGTATAGTA
GCAAAGAAAGCCGGAATCGAAATTTCGTGTAAACGCTCGAATACTCATTC
AAATACTTGATATGCAAAAATCGGTCGAGTCCCATCAAAAGGGCGATGTA
GGAGGCGCTATACATGGCGAACCTTGAGATACCATACAAGACAATGATAC
AAGAGCAATGAAGATATTTGATATACCATATATACAAGATATAGCAAGCA
TTCAAAAATAAGCAACATTGAAAATCGATTATCGATAAAAACATGATCAA
TCTCATTGATTGGTTTTTACGGAATCGTTTGGTAACTTTGATTAGAGCTG
CCAGTAGTAGGTTGACCAAAAttccaaaaacaccaaaagtGATATATATT
AGTGCTAATTTGTCTTTTGTGGATTGAGATAAATCTTCAGAGATTCGAAT
AATTTGATGACACATGGTTATGTTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003520-exon-sc0000028-1491911889:254258..256234 | TCONS_00003520-exon-sc0000028-1491911889:254258..256234 | Clytia hemisphaerica | exon |
| TCONS_00003520-exon-sc0000028-1510915933:254258..256234 | TCONS_00003520-exon-sc0000028-1510915933:254258..256234 | Clytia hemisphaerica | exon |
| TCONS_00003520-exon-sc0000028-1575043694:254258..256234 | TCONS_00003520-exon-sc0000028-1575043694:254258..256234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:254258..256234 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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