TCONS_00003517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003517
Unique NameTCONS_00003517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003517 ID=TCONS_00003517|Name=TCONS_00003517|organism=Clytia hemisphaerica|type=transcript|length=434bp
GAGGAAGGGAACACGTCTTGACGTTCTTGAACGATGGTATAAAGTTGTTA
AAATTAATGAAGAGATTAGGGATTCATTTTTTTAGTGGAAAGGAAAATAT
TCGATCACGATGATATTCAAAAACAAGATAGAAGGCTTGGAAATCGTGGA
ATACAATATTGAAAAGCATTCTCGGGAAGTACAAAAACTTTTGGACGAAT
ACTTAGTACCAACTTATTACAAACGTATGGGAATCACACAAGATGAAAGA
TTGAAATATGCAgaggttgaagatattttacATCCTAATTTAGCAAAGGA
TTccaaattcgaaaaattttctgtgGTGGTTTTAGATGAATCTGGTAAAG
TCGTTGGTCTCGGATTAAGCTACTTGGTAACCAAGCAACAATACCTGGAG
GAATTTATCGACATTAATCTCAAGATTGTAAACN
Run BLAST on NCBI

protein sequence of TCONS_00003517-protein

>TCONS_00003517-protein ID=TCONS_00003517-protein|Name=TCONS_00003517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MIFKNKIEGLEIVEYNIEKHSREVQKLLDEYLVPTYYKRMGITQDERLKY
AEVEDILHPNLAKDSKFEKFSVVVLDESGKVVGLGLSYLVTKQQYLEEFI
DINLKIVN
Run BLAST on NCBI

transcript from alignment at sc0000028:129272..129705

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003517 ID=TCONS_00003517|Name=TCONS_00003517|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0000028:129272..129705 (Clytia hemisphaerica)
NGTTTACAATCTTGAGATTAATGTCGATAAATTCCTCCAGGTATTGTTGC
TTGGTTACCAAGTAGCTTAATCCGAGACCAACGACTTTACCAGATTCATC
TAAAACCACcacagaaaatttttcgaatttggAATCCTTTGCTAAATTAG
GATgtaaaatatcttcaacctcTGCATATTTCAATCTTTCATCTTGTGTG
ATTCCCATACGTTTGTAATAAGTTGGTACTAAGTATTCGTCCAAAAGTTT
TTGTACTTCCCGAGAATGCTTTTCAATATTGTATTCCACGATTTCCAAGC
CTTCTATCTTGTTTTTGAATATCATCGTGATCGAATATTTTCCTTTCCAC
TAAAAAAATGAATCCCTAATCTCTTCATTAATTTTAACAACTTTATACCA
TCGTTCAAGAACGTCAAGACGTGTTCCCTTCCTC

Coding sequence (CDS) from alignment at sc0000028:129272..129705

>TCONS_00003517 ID=TCONS_00003517|Name=TCONS_00003517|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000028:129272..129705 (Clytia hemisphaerica)
GTTTACAATCTTGAGATTAATGTCGATAAATTCCTCCAGGTATTGTTGCT
TGGTTACCAAGTAGCTTAATCCGAGACCAACGACTTTACCAGATTCATCT
AAAACCACcacagaaaatttttcgaatttggAATCCTTTGCTAAATTAGG
ATgtaaaatatcttcaacctcTGCATATTTCAATCTTTCATCTTGTGTGA
TTCCCATACGTTTGTAATAAGTTGGTACTAAGTATTCGTCCAAAAGTTTT
TGTACTTCCCGAGAATGCTTTTCAATATTGTATTCCACGATTTCCAAGCC
TTCTATCTTGTTTTTGAATATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001959XLOC_001959Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003517-proteinTCONS_00003517-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003517-exon-sc0000028-1491911889:129272..129705TCONS_00003517-exon-sc0000028-1491911889:129272..129705Clytia hemisphaericaexon
TCONS_00003517-exon-sc0000028-1510915933:129272..129705TCONS_00003517-exon-sc0000028-1510915933:129272..129705Clytia hemisphaericaexon
TCONS_00003517-exon-sc0000028-1575043694:129272..129705TCONS_00003517-exon-sc0000028-1575043694:129272..129705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:129272..129705 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3729	0.461285	0.535596	0.698663	0.212639	0.16803	3.17021	10.0586	10.2862	15.527	42.508	4.31743	46.3147	31.631	33.6767	31.0535	9.90075	37.8871	4.69325	10.5031	1.82943	0.548592	1.44633	2.87514	1.86222	7.85667	171.131	79.2265	26.6687	12.9194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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