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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003515 ID=TCONS_00003515|Name=TCONS_00003515|organism=Clytia hemisphaerica|type=transcript|length=1080bp
TAGAtattaagaaacaaaaaaaaaacgactTTAAGATGGCAGGTTTCAGG
TTTGCATCTTATAACATTCAAAAGCATGCAAAACAAGCACGAAAACTGAT
CGATAATTATTTGCTACCAACCTACTATCAAAGAATGGGTATCAAAGATG
AAGACGCGCCTAAATACGCTGACTTTGAGGATATTCTCGATCCACAATCA
ATCATGGATCCTCGGTATGAACAAACATCTAAAGTGGCTTTGAACCAATC
AGGTGATATGGTTGGTTTACACTTAAGTTATTTTGTGGATAAACCTTCTT
GGCAAAAAGACTTTATTGGTTCTAGTAAAGAAGGCGCTCACAACAAAAAC
TTTAAAGAAAGCGTACGAAAATATTCCCAACATCGTTATGAAGTTTGTAA
AGGAGTTGATGAACTTTTTGATCGCTACCAACTTGAGAAATTCATTTATT
TCGAAAGTACTATTGTTCATCCGGATTATAGACGTATGGGAATAAGTCAG
GCAAACCAAAAGTTAGCTTATGAGGAATTTGGCACGAAATATGGTATCTT
GACAGAGAGTCAAACCCCAAAGTATTTAGTTGATACAGGGAAAATAAAGA
CTTTGGAACAAACAGTCCCTGGTGTGGATGGATTTGAGATTCTGAAAGAT
ATTCGATCTTATGATGATTTTATAGTGGTGGTTACTTTTAGACCACCGTT
ACCAAGActggaaggaaatatttgagtTTGCTGATTGTGGGATACTCAAG
AGAACTTGAACTTAATTAATgactacactttttttatataagaacaattt
tataagaacaaagaggctcaaaatcgccaaaaaataagaacaatttaaga
caaATGCTGAGCCTCAAATTACTCaaattcaagcaatttaggggttaagg
tagtaaaaattgggtataacgcctaaagtacctcaattacaccttataca
tgtttttttataagcataacgcttataagcatatgaaggctcagatttgc
agaattcctaaacataacatgagcatatatgtcagcctgtaATATCTATC
cagtcatttttatctgtttaaaagggtttg Run BLAST on NCBI protein sequence of TCONS_00003515-protein >TCONS_00003515-protein ID=TCONS_00003515-protein|Name=TCONS_00003515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
DIKKQKKNDFKMAGFRFASYNIQKHAKQARKLIDNYLLPTYYQRMGIKDE
DAPKYADFEDILDPQSIMDPRYEQTSKVALNQSGDMVGLHLSYFVDKPSW
QKDFIGSSKEGAHNKNFKESVRKYSQHRYEVCKGVDELFDRYQLEKFIYF
ESTIVHPDYRRMGISQANQKLAYEEFGTKYGILTESQTPKYLVDTGKIKT
LEQTVPGVDGFEILKDIRSYDDFIVVVTFRPPLPRLEGNI Run BLAST on NCBI transcript from alignment at sc0000028:120389..121468 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003515 ID=TCONS_00003515|Name=TCONS_00003515|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0000028:120389..121468 (Clytia hemisphaerica)
caaacccttttaaacagataaaaatgactgGATAGATATtacaggctgac
atatatgctcatgttatgtttaggaattctgcaaatctgagccttcatat
gcttataagcgttatgcttataaaaaaacatgtataaggtgtaattgagg
tactttaggcgttatacccaatttttactaccttaacccctaaattgctt
gaatttGAGTAATTTGAGGCTCAGCATttgtcttaaattgttcttatttt
ttggcgattttgagcctctttgttcttataaaattgttcttatataaaaa
aagtgtagtcATTAATTAAGTTCAAGTTCTCTTGAGTATCCCACAATCAG
CAAactcaaatatttccttccagTCTTGGTAACGGTGGTCTAAAAGTAAC
CACCACTATAAAATCATCATAAGATCGAATATCTTTCAGAATCTCAAATC
CATCCACACCAGGGACTGTTTGTTCCAAAGTCTTTATTTTCCCTGTATCA
ACTAAATACTTTGGGGTTTGACTCTCTGTCAAGATACCATATTTCGTGCC
AAATTCCTCATAAGCTAACTTTTGGTTTGCCTGACTTATTCCCATACGTC
TATAATCCGGATGAACAATAGTACTTTCGAAATAAATGAATTTCTCAAGT
TGGTAGCGATCAAAAAGTTCATCAACTCCTTTACAAACTTCATAACGATG
TTGGGAATATTTTCGTACGCTTTCTTTAAAGTTTTTGTTGTGAGCGCCTT
CTTTACTAGAACCAATAAAGTCTTTTTGCCAAGAAGGTTTATCCACAAAA
TAACTTAAGTGTAAACCAACCATATCACCTGATTGGTTCAAAGCCACTTT
AGATGTTTGTTCATACCGAGGATCCATGATTGATTGTGGATCGAGAATAT
CCTCAAAGTCAGCGTATTTAGGCGCGTCTTCATCTTTGATACCCATTCTT
TGATAGTAGGTTGGTAGCAAATAATTATCGATCAGTTTTCGTGCTTGTTT
TGCATGCTTTTGAATGTTATAAGATGCAAACCTGAAACCTGCCATCTTAA
agtcgttttttttttgtttcttaataTCTA Coding sequence (CDS) from alignment at sc0000028:120389..121468 >TCONS_00003515 ID=TCONS_00003515|Name=TCONS_00003515|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at sc0000028:120389..121468 (Clytia hemisphaerica)
tcaaatatttccttccagTCTTGGTAACGGTGGTCTAAAAGTAACCACCA
CTATAAAATCATCATAAGATCGAATATCTTTCAGAATCTCAAATCCATCC
ACACCAGGGACTGTTTGTTCCAAAGTCTTTATTTTCCCTGTATCAACTAA
ATACTTTGGGGTTTGACTCTCTGTCAAGATACCATATTTCGTGCCAAATT
CCTCATAAGCTAACTTTTGGTTTGCCTGACTTATTCCCATACGTCTATAA
TCCGGATGAACAATAGTACTTTCGAAATAAATGAATTTCTCAAGTTGGTA
GCGATCAAAAAGTTCATCAACTCCTTTACAAACTTCATAACGATGTTGGG
AATATTTTCGTACGCTTTCTTTAAAGTTTTTGTTGTGAGCGCCTTCTTTA
CTAGAACCAATAAAGTCTTTTTGCCAAGAAGGTTTATCCACAAAATAACT
TAAGTGTAAACCAACCATATCACCTGATTGGTTCAAAGCCACTTTAGATG
TTTGTTCATACCGAGGATCCATGATTGATTGTGGATCGAGAATATCCTCA
AAGTCAGCGTATTTAGGCGCGTCTTCATCTTTGATACCCATTCTTTGATA
GTAGGTTGGTAGCAAATAATTATCGATCAGTTTTCGTGCTTGTTTTGCAT
GCTTTTGAATGTTATAAGATGCAAACCTGAAACCTGCCATCTTAAagtcg
ttttttttttgtttcttaataTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003515-exon-sc0000028-1491911889:120389..121468 | TCONS_00003515-exon-sc0000028-1491911889:120389..121468 | Clytia hemisphaerica | exon |
| TCONS_00003515-exon-sc0000028-1510915933:120389..121468 | TCONS_00003515-exon-sc0000028-1510915933:120389..121468 | Clytia hemisphaerica | exon |
| TCONS_00003515-exon-sc0000028-1575043694:120389..121468 | TCONS_00003515-exon-sc0000028-1575043694:120389..121468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:120389..121468 . |
Blast
The following BLAST results are available for this feature:
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